EST details — SGN-E398553

Search information 
Request: 398553Match: SGN-E398553
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174530Clone name: TUS-18-P16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174530 is on microarray TOM1 spot ID 1-1-1.4.16.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23175 [cLED-4-L11] Trace: SGN-T49484 EST: SGN-E231715 Direction: 5' Facility: TIGR
Clone: SGN-C174530 [TUS-18-P16] Trace: SGN-T197394 EST: SGN-E396068 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E398553Length: 577 bp (834 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E398553 [] (trimmed) AAAAAAAAAAATATCTTTCTTTCCTTTGGAAAAAGGATCCAAATCTACAAATAATCCCAACTTGTAACTCAAGCATAAAAAGAAATAACTAATAC
AACCCCCTTCCTAATACCCCAAAATTTTAATTTTTTTTTTTTTGGAACAAATAATAATTTCCCTAACCCTTCCAACTTTTTTCCCCGCAAAAAAA
TAATGCCTGGCCAATTTGCAAAAAAAACCCCACTGGAAAAATTAACCATAATCCCCCGTTCAATAAAACGCGCAAAAATGCCCCGGAAATTATTT
GAAACAAAAAAGGGTTGGTCTCTTTTCAAAAATGCTATTGAAAAATTGGGTCCTTGAATCTTGGCTTCTATTACCAATCCTTCCCCCCTTATAAG
CGGAAAGACTCCCAAAGCAAACAACTACCCCTCTCAACTCGGGTTACCATGATTACCTTTGGGATTCGATTGCCCCCCATTTTCTTCCCTAGGGG
AAAATTTAAGTGCCCAGGGTGGTACCGCAGTAAATCCATTCTCTTTGATTGATCCCTCTGTAAGAACAAAAATGATGGTTTTTTCCGATGGATTC
CCAAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398553] SGN-U587494 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199879 [Download][View] Facility Assigned ID: FA0AAD6DH08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.880 Expected Error Rate: 0.0268 Quality Trim Threshold: 14.5