EST details — SGN-E540082
| Search information |
| Request: 540082 | Match: SGN-E540082 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190349 | Clone name: TUS-60-C19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C74527 [cLES-10-C9] | Trace: SGN-T99632 | EST: SGN-E285492 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190349 [TUS-60-C19] | Trace: SGN-T340955 | EST: SGN-E540080 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540082 | Length: 650 bp (924 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E540082 [] (trimmed)
GAATTTGGGATATAGCAATGAATTTCAGGCAATGTTGGATGGATTGGAAGATGAAGATGGGATAGAAGAAAGTGGATGTGGAACAGGGAAGAAAA
GGAGGTTAAGAGTAGATCAAGTTCAAGCACTGGAGAAAATTTTCGAGGTTGATAATAAACTTGATCCTGATAGAAAAGTTAAAATTGCACAAGAA
TTAGGCCTGCAACCAAGACAAATTGCAATTTGGTTCCAAAATCGCCGTGCCCGTTGGAAGACTAAGCAATTAGAAAGAGATTATAACATTCTCAA
GTCCAATTACGAAGCTCTTCAACATAATTACACCAAAGTTGAACAAGAAAAAGAAGGATTGATTACTGAGGTAATTATATCTAATACTCCCTCGT
CTATTTTTACTTGTCCACTATACTAAACTGGACAAGTAAAAGCGGACGAAATCATGTTTTAGCTGATATGGTTATTTATCGAAATTGCAGTTAAA
AGGGCTGACAGAGAAGCTAGGAGAGGAAACATTATTATCCCCTGTATATCAAAGGCCACAAGAAATTCTGAATAAGTTGAAGAATTCATCGGATT
TTGTGGATTCAAAAGATGGATCATCAGATAGTGATTCAAGTGGAGTGATGAATGATGAAACTTANCACATTTCAACACTC
GGAGGTTAAGAGTAGATCAAGTTCAAGCACTGGAGAAAATTTTCGAGGTTGATAATAAACTTGATCCTGATAGAAAAGTTAAAATTGCACAAGAA
TTAGGCCTGCAACCAAGACAAATTGCAATTTGGTTCCAAAATCGCCGTGCCCGTTGGAAGACTAAGCAATTAGAAAGAGATTATAACATTCTCAA
GTCCAATTACGAAGCTCTTCAACATAATTACACCAAAGTTGAACAAGAAAAAGAAGGATTGATTACTGAGGTAATTATATCTAATACTCCCTCGT
CTATTTTTACTTGTCCACTATACTAAACTGGACAAGTAAAAGCGGACGAAATCATGTTTTAGCTGATATGGTTATTTATCGAAATTGCAGTTAAA
AGGGCTGACAGAGAAGCTAGGAGAGGAAACATTATTATCCCCTGTATATCAAAGGCCACAAGAAATTCTGAATAAGTTGAAGAATTCATCGGATT
TTGTGGATTCAAAAGATGGATCATCAGATAGTGATTCAAGTGGAGTGATGAATGATGAAACTTANCACATTTCAACACTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540082] | SGN-U580224 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340957 [Download][View] | Facility Assigned ID: TUS60C19_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.955 | Expected Error Rate: 0.0130 | Quality Trim Threshold: 14.5 |
Working
