EST details — SGN-E540339

Search information 
Request: 540339Match: SGN-E540339
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C190500Clone name: TUS-60-J2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C75727 [cLES-15-D21] Trace: SGN-T100929 EST: SGN-E287424 Direction: 5' Facility: TIGR
Clone: SGN-C190500 [TUS-60-J2] Trace: SGN-T341217 EST: SGN-E540342 Direction: 5' Facility: INRA (MWG)
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Sequence 
Sequence Id: SGN-E540339Length: 778 bp (844 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E540339 [] (trimmed) ACAAGTATTCAAATTGTAGCAAACACCTTTATATCATATAACTTCTCTTATCTCCATGATTCATATGTCCAACCTCATGAAGGAAAAAAAAAACA
TTAGTACAAGAATGGACATCTTAATTGTCAATCATCATAGGTTGGCATACAATATGGGAGTAAAAAAAAAAAAAGAGGCAAAAATTGCATTAAAG
AAAATCCCTATTTCACGATCGATAAGTGAGGCCTGCTCAAGTAGTTGAACAACCAACAAGGGTTCGAGTCACAGTAGAGGACAAGTGAGAACACT
ATTGATCCTCCTGGTGTGAACGAAAAAACGAAATGTTATTTCAAGATCCATATTCATTAAGGTATCTTTCTGCAATAGCAGCATGAGTAGCTGCA
CCAATAGGCAATACATCTTCATCAATCATAAAATGTGGTGAATGTCCTGTATGTATTGATCCTAAGGTCTCATTCCTTATACCAATATAGAAAAA
TGCAGCAGGAATTACTTCAGAGTAGAATGAAAAATCCTCTGCTCCCATCATTGGCGGAACGACCTTAAAATTGGTCGTTCCAACCAAATCACTCG
CGACCATCCTCACGTGCTCGTACATTGTGTCATCGTTCACAGTCGGAGGGTAGATCGTGTCCTTATCCTCGAAAAAATCAACTGTTGCACTGCAT
CTGAATACACTAGCTTGTTCTGTGAAAACCTCTCTTATCCTTTTAAGAAGTTGATAAAAATTGATTGTCGAAAAAGCTCTGAATGTACCACTGAG
TATAACTGATTCTGGTAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E540339] SGN-U575074 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T341214 [Download][View] Facility Assigned ID: TUS60J02_P1
Submitter: Koni Sequencing Facility: INRA (MWG)
Funding Organization: INRA
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: No vector sequence detected
Passed all screens and filters
Sequence Entropy: 0.958 Expected Error Rate: 0.0024 Quality Trim Threshold: 20.5