EST details — SGN-E541392
| Search information |
| Request: 541392 | Match: SGN-E541392 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C191113 | Clone name: TUS-62-C15 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C84370 [cLET-28-I3] | Trace: SGN-T109486 | EST: SGN-E297692 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C191113 [TUS-62-C15] | Trace: SGN-T349417 | EST: SGN-E548542 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E541392 | Length: 771 bp (877 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E541392 [] (trimmed)
GGTGGCTAATAATGGAGGTTTGCATTTATACAAATTTCAAACTTGGTACAAAGATATTGAATAGGCACAGATATATATGTTAAACCTGATGCAGT
GGTAGCATGAAAATTCTCTACACAAATCTAACATTTACAATGTTATTATTCCTGAACATTCTCTACATCTAATGTGATAATACACCTTCATGATT
TATGGTACATGGCTGGACAGAAATCTACCTCCAAGCAAGTTCCAGCCTGCATATTTACCTGTGTGTGTACTCTTGTAGGGCCTTACTATTATCTT
GAAATATTTTCTATACAGTGTACGTCTCTTCTGCAAATGGAGTAGAAAGCTGCTGAGCTTTCTTCTCTATCCAGACATAAGGAGGGGAGATCAGT
TGATTGACAGCTATATTATTTTGTATCGCTTTTGTAATTAACCATGTAAATTGCAGCCACTGTGACAAATGCTCCAATTAGTTGCACAGGTGTGA
AGATCTCATCTAGATATAGGAACCCAAAAATTGATGCAAACATTGGAGTTAAAAAGGTAAGGGAGCTGAGCTTTGTCAGGCTACCTCTTGTTGCA
TTGTAGAAGTATACACCATAGCTTATGGCACTTCCAAAGATTGAGGTATAGAGCAATGCCAACAAGTCATTTGTTGTTAGTTCCATCAAACTCCC
ACTAATGACAGGTTCATGATTGAGAATTGAGATAGCCACCAGAGGAAGTCCCCCCATAACCATGTGCCATCCAGTAGCCATGACTGGGGTCGAGT
ATTTAGAAACC
GGTAGCATGAAAATTCTCTACACAAATCTAACATTTACAATGTTATTATTCCTGAACATTCTCTACATCTAATGTGATAATACACCTTCATGATT
TATGGTACATGGCTGGACAGAAATCTACCTCCAAGCAAGTTCCAGCCTGCATATTTACCTGTGTGTGTACTCTTGTAGGGCCTTACTATTATCTT
GAAATATTTTCTATACAGTGTACGTCTCTTCTGCAAATGGAGTAGAAAGCTGCTGAGCTTTCTTCTCTATCCAGACATAAGGAGGGGAGATCAGT
TGATTGACAGCTATATTATTTTGTATCGCTTTTGTAATTAACCATGTAAATTGCAGCCACTGTGACAAATGCTCCAATTAGTTGCACAGGTGTGA
AGATCTCATCTAGATATAGGAACCCAAAAATTGATGCAAACATTGGAGTTAAAAAGGTAAGGGAGCTGAGCTTTGTCAGGCTACCTCTTGTTGCA
TTGTAGAAGTATACACCATAGCTTATGGCACTTCCAAAGATTGAGGTATAGAGCAATGCCAACAAGTCATTTGTTGTTAGTTCCATCAAACTCCC
ACTAATGACAGGTTCATGATTGAGAATTGAGATAGCCACCAGAGGAAGTCCCCCCATAACCATGTGCCATCCAGTAGCCATGACTGGGGTCGAGT
ATTTAGAAACC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E541392] | SGN-U573785 | Tomato 200607 | Build 2 | 2 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T342267 [Download][View] | Facility Assigned ID: TUS62C15_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.960 | Expected Error Rate: 0.0045 | Quality Trim Threshold: 14.5 |
Working
