EST details — SGN-E541880
| Search information |
| Request: 541880 | Match: SGN-E541880 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C191397 | Clone name: TUS-62-O11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C91660 [cLEW-8-B15] | Trace: SGN-T112559 | EST: SGN-E300954 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C191397 [TUS-62-O11] | Trace: SGN-T342757 | EST: SGN-E541882 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E541880 | Length: 801 bp (899 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E541880 [] (trimmed)
AATATAATATTCAATTCAATAGAACAAAGGATGATACATTCATCAATTCTTTTCACATTTTTTATAATTAATACCAAAACGTTACTAGTAATTAA
TACTTATTCCTTCAAAACAACCATTAATCCTTCCCTAACAAATAGATGCTTTCCTAGCTAAAACATATTTCTTCCAAAACTCAGCAATTGCCCTT
TGAACTTCAATTTCTGTTTTCTTCTCATTATTGATCATCAAATTATCCTCCACTTTTTTGGCATTCGGGAGCTCGTGGAGGACCTTGACGATGTC
AGAGACAAGACGATCTGCTAGGGTTCGGGAGAAGTCCTCTCTAATCACAACGCGCAACACTGTAACATGTTGCAGGTCAGCTGGCATAGTGTAGG
CTGGGACAATCCACCCAAACCTACGGAGGGTCTCAGAGACCTCGAATTCGTTGTGGAGGCTATTGTCTTTGAGGGAAAATGCCACCAAGGGTATA
CCTTCATCTTTGGAGATTATATTGAAACGTCCTGTTTTTTCAAGTCCTTTTCTTAGCACAATTGCATTTTCACGACAATTTTCCATTACATTTCG
ATATCCCTCATAGCCCAAGCGGATAAGCTGATAATATTGAGCAATGACTTGACTTGAACCTTTAGAGAAATTGAGAGTAAAAGTAGGCTGATCAG
CACCAAGATAATTGATATGAAAAATGAGTTGTTGAGGCAAGTCTTGTTTAGTTCTCCAAATAACCCAACCAATACCAGCATAAACAAGCCCATAT
TTGTGTCCACTCACATTAATACTTTTCACTAAAGGAAGCCT
TACTTATTCCTTCAAAACAACCATTAATCCTTCCCTAACAAATAGATGCTTTCCTAGCTAAAACATATTTCTTCCAAAACTCAGCAATTGCCCTT
TGAACTTCAATTTCTGTTTTCTTCTCATTATTGATCATCAAATTATCCTCCACTTTTTTGGCATTCGGGAGCTCGTGGAGGACCTTGACGATGTC
AGAGACAAGACGATCTGCTAGGGTTCGGGAGAAGTCCTCTCTAATCACAACGCGCAACACTGTAACATGTTGCAGGTCAGCTGGCATAGTGTAGG
CTGGGACAATCCACCCAAACCTACGGAGGGTCTCAGAGACCTCGAATTCGTTGTGGAGGCTATTGTCTTTGAGGGAAAATGCCACCAAGGGTATA
CCTTCATCTTTGGAGATTATATTGAAACGTCCTGTTTTTTCAAGTCCTTTTCTTAGCACAATTGCATTTTCACGACAATTTTCCATTACATTTCG
ATATCCCTCATAGCCCAAGCGGATAAGCTGATAATATTGAGCAATGACTTGACTTGAACCTTTAGAGAAATTGAGAGTAAAAGTAGGCTGATCAG
CACCAAGATAATTGATATGAAAAATGAGTTGTTGAGGCAAGTCTTGTTTAGTTCTCCAAATAACCCAACCAATACCAGCATAAACAAGCCCATAT
TTGTGTCCACTCACATTAATACTTTTCACTAAAGGAAGCCT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E541880] | SGN-U591866 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T342755 [Download][View] | Facility Assigned ID: TUS62O11_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.959 | Expected Error Rate: 0.0030 | Quality Trim Threshold: 14.5 |
Working
