EST details — SGN-E542500
| Search information |
| Request: 542500 | Match: SGN-E542500 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C191758 | Clone name: TUS-63-N12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C90242 [cLEW-20-G4] | Trace: SGN-T113814 | EST: SGN-E299553 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C191758 [TUS-63-N12] | Trace: SGN-T343377 | EST: SGN-E542502 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E542500 | Length: 738 bp (912 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E542500 [] (trimmed)
GAGGGGGCCAAATTTTTACATTTAAAATAGAACTGAAAACCAGCTATTTCCAGAGGTACAAGTGTGGTTCCTTGGATGGAAAGCCTTTCTCTATT
ACCTTGGCTATACATGCTCGCGTTAACAACATACCCAATATATTCCCAAAACAAGTGACATCTAGAAAGGGTGGGGTGTACACAGACCTTACCCC
TACCTTTACAGGGTAAGTGGAGTAAAGAGGTTGTTTCCTGTAGACTCCTGGATCAAGACTCTGTCAGCTTTAGAAAATATGTATACAAGTACGAT
TCTTCATCTAGATTCAACTTCCAATTAAATGTCAGTGCATGTTGATTTCACCAACATTTTCTTCATTCTTGCTCTCCGTTTCCTCAACTTTTAAT
TTCTTTGCTGCAGAAGAGTTCTCATTTGATAAGCGTGCAAACATTGTTGTATAGAGCTTTGCGTCTCTCTTGTTGCTCTCTGATTGGAGTTGTTT
TAGTGTCTTCTGTATCAGTTTCACCTCCCTGTTTTGTGGCTCTATTGCTAGTGCCTTCTTGATATCCAGTTCAGCCAAGTGCAGATCAGCTGTTT
CCATAAATGCTTGCGCTCTCCTATATAATGCTTTCACATTGCAGGATTCAACTTCTAAGACCTTGCAACATTGCTTGATTGCTTCCTGGAAATAA
CTCTGTTTGAGACAAGCAGCAGCACCATTCAACCAGCATGACACTCTCAATGATTTAACTATCTTTTGATCAT
ACCTTGGCTATACATGCTCGCGTTAACAACATACCCAATATATTCCCAAAACAAGTGACATCTAGAAAGGGTGGGGTGTACACAGACCTTACCCC
TACCTTTACAGGGTAAGTGGAGTAAAGAGGTTGTTTCCTGTAGACTCCTGGATCAAGACTCTGTCAGCTTTAGAAAATATGTATACAAGTACGAT
TCTTCATCTAGATTCAACTTCCAATTAAATGTCAGTGCATGTTGATTTCACCAACATTTTCTTCATTCTTGCTCTCCGTTTCCTCAACTTTTAAT
TTCTTTGCTGCAGAAGAGTTCTCATTTGATAAGCGTGCAAACATTGTTGTATAGAGCTTTGCGTCTCTCTTGTTGCTCTCTGATTGGAGTTGTTT
TAGTGTCTTCTGTATCAGTTTCACCTCCCTGTTTTGTGGCTCTATTGCTAGTGCCTTCTTGATATCCAGTTCAGCCAAGTGCAGATCAGCTGTTT
CCATAAATGCTTGCGCTCTCCTATATAATGCTTTCACATTGCAGGATTCAACTTCTAAGACCTTGCAACATTGCTTGATTGCTTCCTGGAAATAA
CTCTGTTTGAGACAAGCAGCAGCACCATTCAACCAGCATGACACTCTCAATGATTTAACTATCTTTTGATCAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E542500] | SGN-U598814 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T343375 [Download][View] | Facility Assigned ID: TUS63N12_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.943 | Expected Error Rate: 0.0082 | Quality Trim Threshold: 14.5 |
Working
