EST details — SGN-E548439
| Search information |
| Request: 548439 | Match: SGN-E548439 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190749 | Clone name: TUS-61-D11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C88282 [cLET-7-K22] | Trace: SGN-T104226 | EST: SGN-E291973 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190749 [TUS-61-D11] | Trace: SGN-T341644 | EST: SGN-E540769 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E548439 | Length: 766 bp (908 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E548439 [] (trimmed)
AATCATGGACCAATCGGTATCTGTATTGCACATTTACGTGAAGTTATATTTACAAGATGTCTGTGCAAACAACAATGTTAAGATACACTAAGAAA
TATAAGTATTCAGGAGAGTGGAAATGAAAAAAATGAAAAATGATGCACAAATCATCTCTTAGAGAAGATATATGCATGTATACATTTTCACTCTC
ATGTTTTATACGTAACAATTACTGTACTTGTATCTAAATTTTGTGGCTTCAATATACAGTTTTCAAATTTGATATCACCCGGCATTCAACTGCTA
CTTCCAAAAGACATAGCAGTTCTCTCAACATGCTTAAGTAAGATCCCATATATTTTGTTCCTTACCCTTTGACAAACTTCAATTTCTGAGTCATC
CAAGCTCCCATCCTTTCGAGCATTCGCTTCCTTGTTGATTATCACATCTAACCAATCATTGACTCTCTTCACCTTATACATCATTCCTGCTATTT
GACTATCTACTGCCATTGAAGAGGCTTTTATTTCAACCTCATCTAGGTACTTCTCTACATGTCCCAAAAACAATTTTCTACACTCGTTCTGCAAC
GAAGAAGCTAGGGCAATGGCTGTAGGCATTGTGCTTCCCCTAGTCCATTCAGGTTGCTCATCTTTGTCAGCCGACAAGAAGGGAATCTCATCAGT
GTTCTTATGTGATTTGACAATATATGACCCTTTGGGTTTGGTACTTCGATTTGATATGCTTGATTTCTTCGGTGTATTGGTGACAGCCATAGTGT
TATGGA
TATAAGTATTCAGGAGAGTGGAAATGAAAAAAATGAAAAATGATGCACAAATCATCTCTTAGAGAAGATATATGCATGTATACATTTTCACTCTC
ATGTTTTATACGTAACAATTACTGTACTTGTATCTAAATTTTGTGGCTTCAATATACAGTTTTCAAATTTGATATCACCCGGCATTCAACTGCTA
CTTCCAAAAGACATAGCAGTTCTCTCAACATGCTTAAGTAAGATCCCATATATTTTGTTCCTTACCCTTTGACAAACTTCAATTTCTGAGTCATC
CAAGCTCCCATCCTTTCGAGCATTCGCTTCCTTGTTGATTATCACATCTAACCAATCATTGACTCTCTTCACCTTATACATCATTCCTGCTATTT
GACTATCTACTGCCATTGAAGAGGCTTTTATTTCAACCTCATCTAGGTACTTCTCTACATGTCCCAAAAACAATTTTCTACACTCGTTCTGCAAC
GAAGAAGCTAGGGCAATGGCTGTAGGCATTGTGCTTCCCCTAGTCCATTCAGGTTGCTCATCTTTGTCAGCCGACAAGAAGGGAATCTCATCAGT
GTTCTTATGTGATTTGACAATATATGACCCTTTGGGTTTGGTACTTCGATTTGATATGCTTGATTTCTTCGGTGTATTGGTGACAGCCATAGTGT
TATGGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E548439] | SGN-U601885 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T349314 [Download][View] | Facility Assigned ID: TUS61D11_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.958 | Expected Error Rate: 0.0039 | Quality Trim Threshold: 14.5 |
Working
