| genbank/nr [blastx] | Showing best 63 hits recorded |
| Match: gi|147803430|emb|CAN62239.1| |
score: 195 |
e-value: 6e-48 |
Identity: 88.28% |
Span: 384bp (37.0%) |
Frame: 1 |
| hypothetical |
| Match: gi|118489961|gb|ABK96777.1| |
score: 193 |
e-value: 2e-47 |
Identity: 87.5% |
Span: 384bp (37.0%) |
Frame: 1 |
| unknown |
| Match: gi|18400270|ref|NP_566476.1| |
score: 181 |
e-value: 9e-44 |
Identity: 81.25% |
Span: 384bp (37.0%) |
Frame: 1 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] >gi30682974... |
| Match: gi|116783136|gb|ABK22805.1| |
score: 179 |
e-value: 4e-43 |
Identity: 80.3% |
Span: 396bp (38.1%) |
Frame: 1 |
| unknown [Picea sitchensis] |
| Match: gi|18394697|ref|NP_564072.1| |
score: 175 |
e-value: 5e-42 |
Identity: 82.03% |
Span: 384bp (37.0%) |
Frame: 1 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] >gi15724180... |
| Match: gi|21537395|gb|AAM61736.1| |
score: 174 |
e-value: 1e-41 |
Identity: 82.03% |
Span: 384bp (37.0%) |
Frame: 1 |
| unknown [Arabidopsis thaliana] |
| Match: gi|157342506|emb|CAO65218.1| |
score: 173 |
e-value: 2e-41 |
Identity: 85.83% |
Span: 360bp (34.6%) |
Frame: 1 |
| unnamed |
| Match: gi|157342506|emb|CAO65218.1| |
score: 172 |
e-value: 3e-41 |
Identity: 88.17% |
Span: 279bp (26.9%) |
Frame: 1 |
| unnamed |
| Match: gi|115458610|ref|NP_001052905.1| |
score: 168 |
e-value: 8e-40 |
Identity: 77.95% |
Span: 381bp (36.7%) |
Frame: 1 |
| Os04g0445800 [Oryza sativa (japonica cultivar-group)] >gi113564476|dbj|BAF14819.1| Os04g0445800 [Oryza sativa Japonic... |
| Match: gi|195605684|gb|ACG24672.1| |
score: 166 |
e-value: 4e-39 |
Identity: 76.56% |
Span: 384bp (37.0%) |
Frame: 1 |
| small |
| Match: gi|195605102|gb|ACG24381.1| |
score: 162 |
e-value: 4e-38 |
Identity: 75.78% |
Span: 384bp (37.0%) |
Frame: 1 |
| small |
| Match: gi|38344547|emb|CAD40963.2| |
score: 161 |
e-value: 1e-37 |
Identity: 73.88% |
Span: 381bp (36.7%) |
Frame: 1 |
| OSJNBa0027P08.15 [Oryza sativa (japonica cultivar-group)] >gi116310232|emb|CAH67241.1| OSIGBa0140O07.9 [Oryza sativa ... |
| Match: gi|9294633|dbj|BAB02972.1| |
score: 157 |
e-value: 1e-36 |
Identity: 80.43% |
Span: 276bp (26.6%) |
Frame: 1 |
| unnamed protein product [Arabidopsis thaliana] |
| Match: gi|168017010|ref|XP_001761041.1| |
score: 153 |
e-value: 3e-35 |
Identity: 71.88% |
Span: 384bp (37.0%) |
Frame: 1 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162687727|gb|EDQ74108.1| predicted protein [Physcomitrella... |
| Match: gi|8778287|gb|AAF79296.1|AC068602_19 |
score: 152 |
e-value: 5e-35 |
Identity: 63.25% |
Span: 384bp (37.0%) |
Frame: 1 |
| F14D16.28 [Arabidopsis thaliana] |
| Match: gi|168038612|ref|XP_001771794.1| |
score: 148 |
e-value: 7e-34 |
Identity: 70.31% |
Span: 384bp (37.0%) |
Frame: 1 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162676925|gb|EDQ63402.1| predicted protein [Physcomitrella... |
| Match: gi|195606938|gb|ACG25299.1| |
score: 146 |
e-value: 2e-33 |
Identity: 60.16% |
Span: 384bp (37.0%) |
Frame: 1 |
| small nuclear ribonucleoprotein LSM1 [Zea mays] |
| Match: gi|125590522|gb|EAZ30872.1| |
score: 128 |
e-value: 7e-28 |
Identity: 48.5% |
Span: 381bp (36.7%) |
Frame: 1 |
| hypothetical |
| Match: gi|159469406|ref|XP_001692854.1| |
score: 100 |
e-value: 3e-19 |
Identity: 54.35% |
Span: 276bp (26.6%) |
Frame: 1 |
| Sm protein LSm1 [Chlamydomonas reinhardtii] >gi158277656|gb|EDP03423.1| Sm protein LSm1 [Chlamydomonas reinhardtii] |
| Match: gi|145352933|ref|XP_001420788.1| |
score: 96.7 |
e-value: 3e-18 |
Identity: 56.38% |
Span: 270bp (26.0%) |
Frame: 1 |
| predicted |
| Match: gi|145232130|ref|XP_001399521.1| |
score: 85.9 |
e-value: 5e-15 |
Identity: 52.7% |
Span: 219bp (21.1%) |
Frame: 1 |
| hypothetical protein An02g03850 [Aspergillus niger] >gi134056432|emb|CAL00599.1| unnamed protein product [Aspergillus... |
| Match: gi|119481233|ref|XP_001260645.1| |
score: 84.7 |
e-value: 1e-14 |
Identity: 45.45% |
Span: 252bp (24.3%) |
Frame: 1 |
| small |
| Match: gi|71001662|ref|XP_755512.1| |
score: 84 |
e-value: 2e-14 |
Identity: 48.81% |
Span: 240bp (23.1%) |
Frame: 1 |
| small |
| Match: gi|115383876|ref|XP_001208485.1| |
score: 82.4 |
e-value: 6e-14 |
Identity: 46.43% |
Span: 240bp (23.1%) |
Frame: 1 |
| hypothetical |
| Match: gi|211588603|emb|CAP86719.1| |
score: 80.5 |
e-value: 2e-13 |
Identity: 45.24% |
Span: 240bp (23.1%) |
Frame: 1 |
| Pc20g13900 |
| Match: gi|212537161|ref|XP_002148736.1| |
score: 79 |
e-value: 6e-13 |
Identity: 46.91% |
Span: 240bp (23.1%) |
Frame: 1 |
| small |
| Match: gi|148298867|ref|NP_001091827.1| |
score: 78.2 |
e-value: 1e-12 |
Identity: 57.33% |
Span: 225bp (21.7%) |
Frame: 1 |
| LSM1-like |
| Match: gi|121715718|ref|XP_001275468.1| |
score: 78.2 |
e-value: 1e-12 |
Identity: 43.82% |
Span: 264bp (25.4%) |
Frame: 1 |
| small |
| Match: gi|156391102|ref|XP_001635608.1| |
score: 77.8 |
e-value: 1e-12 |
Identity: 54.79% |
Span: 219bp (21.1%) |
Frame: 1 |
| predicted |
| Match: gi|66814660|ref|XP_641509.1| |
score: 77.8 |
e-value: 1e-12 |
Identity: 43.68% |
Span: 261bp (25.1%) |
Frame: 1 |
| gi|66814660|ref|XP_641509.1| hypothetical protein DDB0206318 [Dictyostelium discoideum] >gi|60469541|gb|EAL67532.1| h... |
| Match: gi|218716117|gb|EED15539.1| |
score: 77.4 |
e-value: 2e-12 |
Identity: 45.68% |
Span: 240bp (23.1%) |
Frame: 1 |
| small |
| Match: gi|91093274|ref|XP_971370.1| |
score: 77 |
e-value: 2e-12 |
Identity: 57.89% |
Span: 225bp (21.7%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|195382173|ref|XP_002049805.1| |
score: 76.3 |
e-value: 4e-12 |
Identity: 53.16% |
Span: 237bp (22.8%) |
Frame: 1 |
| GJ21790 |
| Match: gi|195429567|ref|XP_002062829.1| |
score: 75.9 |
e-value: 5e-12 |
Identity: 53.16% |
Span: 237bp (22.8%) |
Frame: 1 |
| GK19486 |
| Match: gi|19112312|ref|NP_595520.1| |
score: 75.9 |
e-value: 5e-12 |
Identity: 48.28% |
Span: 345bp (33.2%) |
Frame: 1 |
| gi|19112312|ref|NP_595520.1| hypothetical protein [Schizosaccharomyces pombe] gi|3287944|sp|P87173|YB18_SCHPO Hypothe... |
| Match: gi|156553084|ref|XP_001600131.1| |
score: 75.1 |
e-value: 9e-12 |
Identity: 51.16% |
Span: 258bp (24.8%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|154291173|ref|XP_001546172.1| |
score: 74.7 |
e-value: 1e-11 |
Identity: 42% |
Span: 240bp (23.1%) |
Frame: 1 |
| hypothetical |
| Match: gi|125811580|ref|XP_001361929.1| |
score: 74.7 |
e-value: 1e-11 |
Identity: 51.9% |
Span: 237bp (22.8%) |
Frame: 1 |
| GA18077-PA |
| Match: gi|194881822|ref|XP_001975020.1| |
score: 74.7 |
e-value: 1e-11 |
Identity: 53.16% |
Span: 237bp (22.8%) |
Frame: 1 |
| GG20797 |
| Match: gi|194754723|ref|XP_001959644.1| |
score: 74.3 |
e-value: 2e-11 |
Identity: 51.9% |
Span: 237bp (22.8%) |
Frame: 1 |
| GF12971 |
| Match: gi|58332084|ref|NP_001011191.1| |
score: 74.3 |
e-value: 2e-11 |
Identity: 52% |
Span: 225bp (21.7%) |
Frame: 1 |
| gi|58332084|ref|NP_001011191.1| LSM1 homolog, U6 small nuclear RNA associated [Xenopus tropicalis] >gi|56268999|gb|AA... |
| Match: gi|157820263|ref|NP_001102346.1| |
score: 74.3 |
e-value: 2e-11 |
Identity: 52% |
Span: 225bp (21.7%) |
Frame: 1 |
| LSM1 |
| Match: gi|24656769|ref|NP_611559.1| |
score: 74.3 |
e-value: 2e-11 |
Identity: 51.9% |
Span: 237bp (22.8%) |
Frame: 1 |
| gi|24656769|ref|NP_611559.1| CG4279-PA [Drosophila melanogaster] gi|7291257|gb|AAF46688.1| CG4279-PA [Drosophila mela... |
| Match: gi|219502353|ref|XP_002247513.1| |
score: 74.3 |
e-value: 2e-11 |
Identity: 53.42% |
Span: 219bp (21.1%) |
Frame: 1 |
| hypothetical |
| Match: gi|219502355|ref|XP_002247514.1| |
score: 74.3 |
e-value: 2e-11 |
Identity: 53.42% |
Span: 219bp (21.1%) |
Frame: 1 |
| hypothetical |
| Match: gi|66529526|ref|XP_624639.1| |
score: 73.9 |
e-value: 2e-11 |
Identity: 56% |
Span: 222bp (21.4%) |
Frame: 1 |
| gi|66529526|ref|XP_624639.1| PREDICTED: similar to CG4279-PA [Apis mellifera] |
| Match: gi|148227316|ref|NP_001090109.1| |
score: 73.9 |
e-value: 2e-11 |
Identity: 52% |
Span: 225bp (21.7%) |
Frame: 1 |
| hypothetical |
| Match: gi|66770685|gb|AAY54654.1| |
score: 73.9 |
e-value: 2e-11 |
Identity: 54.05% |
Span: 222bp (21.4%) |
Frame: 1 |
| gi|66770685|gb|AAY54654.1| IP04948p [Drosophila melanogaster] |
| Match: gi|126303350|ref|XP_001372820.1| |
score: 73.6 |
e-value: 3e-11 |
Identity: 50.67% |
Span: 225bp (21.7%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|148886747|ref|NP_001092164.1| |
score: 73.6 |
e-value: 3e-11 |
Identity: 52% |
Span: 225bp (21.7%) |
Frame: 1 |
| hypothetical |
| Match: gi|149742575|ref|XP_001493258.1| |
score: 73.6 |
e-value: 3e-11 |
Identity: 50.67% |
Span: 225bp (21.7%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|7657313|ref|NP_055277.1| |
score: 73.6 |
e-value: 3e-11 |
Identity: 50.67% |
Span: 225bp (21.7%) |
Frame: 1 |
| gi|7657313|ref|NP_055277.1| Lsm1 protein [Homo sapiens] gi|20177943|sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like ... |
| Match: gi|62988318|ref|NP_001017952.1| |
score: 73.6 |
e-value: 3e-11 |
Identity: 50.67% |
Span: 225bp (21.7%) |
Frame: 1 |
| Lsm1 |
| Match: gi|197128059|gb|ACH44557.1| |
score: 73.6 |
e-value: 3e-11 |
Identity: 50.67% |
Span: 225bp (21.7%) |
Frame: 1 |
| putative |
| Match: gi|73979315|ref|XP_532806.2| |
score: 73.6 |
e-value: 3e-11 |
Identity: 50.67% |
Span: 225bp (21.7%) |
Frame: 1 |
| gi|73979315|ref|XP_532806.2| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclea... |
| Match: gi|197128062|gb|ACH44560.1| |
score: 73.6 |
e-value: 3e-11 |
Identity: 50.67% |
Span: 225bp (21.7%) |
Frame: 1 |
| putative |
| Match: gi|57525910|ref|NP_001003551.1| |
score: 73.6 |
e-value: 3e-11 |
Identity: 51.19% |
Span: 240bp (23.1%) |
Frame: 1 |
| gi|57525910|ref|NP_001003551.1| hypothetical protein LOC445157 [Danio rerio] >gi|50417210|gb|AAH78334.1| Zgc:101136 [... |
| Match: gi|149634108|ref|XP_001506314.1| |
score: 73.2 |
e-value: 3e-11 |
Identity: 50.67% |
Span: 225bp (21.7%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|164657750|ref|XP_001730001.1| |
score: 72.8 |
e-value: 5e-11 |
Identity: 58.93% |
Span: 168bp (16.2%) |
Frame: 1 |
| hypothetical |
| Match: gi|71017769|ref|XP_759115.1| |
score: 72.4 |
e-value: 6e-11 |
Identity: 41.3% |
Span: 237bp (22.8%) |
Frame: 1 |
| gi|71017769|ref|XP_759115.1| hypothetical protein UM02968.1 [Ustilago maydis 521] >gi|46098907|gb|EAK84140.1| hypothe... |
| Match: gi|110625667|ref|NP_080308.1| |
score: 72.4 |
e-value: 6e-11 |
Identity: 49.33% |
Span: 225bp (21.7%) |
Frame: 1 |
| LSM1 |
| Match: gi|198437342|ref|XP_002124367.1| |
score: 72.4 |
e-value: 6e-11 |
Identity: 44.44% |
Span: 255bp (24.5%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|195025615|ref|XP_001986091.1| |
score: 72 |
e-value: 8e-11 |
Identity: 50.63% |
Span: 237bp (22.8%) |
Frame: 1 |
| GH21171 |
|
| arabidopsis/peptide [blastx] | Showing best 3 hits recorded |
| Match: At3G14080.2 |
score: 181 |
e-value: 7e-46 |
Identity: 81.25% |
Span: 384bp (37.0%) |
Frame: 1 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | chr3:4667724-4668996 FORWARD |
| Match: At3G14080.1 |
score: 181 |
e-value: 7e-46 |
Identity: 81.25% |
Span: 384bp (37.0%) |
Frame: 1 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | chr3:4667724-4668996 FORWARD |
| Match: At1G19120.1 |
score: 175 |
e-value: 4e-44 |
Identity: 82.03% |
Span: 384bp (37.0%) |
Frame: 1 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | chr1:6608279-6609153 FORWARD |
|
| swissprot [blastx] | Showing best 5 hits recorded |
| Match: Q54W83 |
score: 77.8 |
e-value: 9e-14 |
Identity: 43.68% |
Span: 261bp (25.1%) |
Frame: 1 |
| Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1 |
| Match: P87173 |
score: 75.9 |
e-value: 4e-13 |
Identity: 48.28% |
Span: 345bp (33.2%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe GN=lsm1 PE=2 SV=1 |
| Match: Q5E9Z8 |
score: 73.6 |
e-value: 2e-12 |
Identity: 50.67% |
Span: 225bp (21.7%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1 |
| Match: O15116 |
score: 73.6 |
e-value: 2e-12 |
Identity: 50.67% |
Span: 225bp (21.7%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1 |
| Match: Q8VC85 |
score: 72.4 |
e-value: 4e-12 |
Identity: 49.33% |
Span: 225bp (21.7%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1 PE=2 SV=1 |
|
