| genbank/nr [blastx] | Showing best 100 hits recorded |
| Match: gi|157342777|emb|CAO65489.1| |
score: 359 |
e-value: 3e-97 |
Identity: 84.47% |
Span: 618bp (55.7%) |
Frame: 3 |
| unnamed |
| Match: gi|15228724|ref|NP_188871.1| |
score: 338 |
e-value: 6e-91 |
Identity: 78.92% |
Span: 612bp (55.2%) |
Frame: 3 |
| NRPB5; DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] >gi13899113|gb|AAK48978.1|AF370551_1 RNA poly... |
| Match: gi|192910670|gb|ACF06443.1| |
score: 308 |
e-value: 5e-82 |
Identity: 72.55% |
Span: 612bp (55.2%) |
Frame: 3 |
| DNA-directed RNA polymerases II 24 kDa polypeptide [Elaeis guineensis] |
| Match: gi|168011548|ref|XP_001758465.1| |
score: 308 |
e-value: 7e-82 |
Identity: 70.79% |
Span: 606bp (54.6%) |
Frame: 3 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162690500|gb|EDQ76867.1| predicted protein [Physcomitrella... |
| Match: gi|168003716|ref|XP_001754558.1| |
score: 304 |
e-value: 1e-80 |
Identity: 69.8% |
Span: 606bp (54.6%) |
Frame: 3 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162694179|gb|EDQ80528.1| predicted protein [Physcomitrella... |
| Match: gi|148910132|gb|ABR18148.1| |
score: 295 |
e-value: 5e-78 |
Identity: 71.84% |
Span: 618bp (55.7%) |
Frame: 3 |
| unknown [Picea sitchensis] |
| Match: gi|38344231|emb|CAD41325.2| |
score: 290 |
e-value: 2e-76 |
Identity: 67% |
Span: 609bp (54.9%) |
Frame: 3 |
| OJ991113_30.8 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|115440569|ref|NP_001044564.1| |
score: 288 |
e-value: 6e-76 |
Identity: 66.5% |
Span: 618bp (55.7%) |
Frame: 3 |
| Os01g0805800 [Oryza sativa (japonica cultivar-group)] >gi55296830|dbj|BAD68174.1| putative DNA-directed RNA polymeras... |
| Match: gi|212722800|ref|NP_001132429.1| |
score: 287 |
e-value: 1e-75 |
Identity: 66.5% |
Span: 618bp (55.7%) |
Frame: 3 |
| hypothetical protein LOC100193880 [Zea mays] >gi194694360|gb|ACF81264.1| unknown [Zea mays] |
| Match: gi|194703030|gb|ACF85599.1| |
score: 286 |
e-value: 2e-75 |
Identity: 66.02% |
Span: 618bp (55.7%) |
Frame: 3 |
| unknown |
| Match: gi|125548794|gb|EAY94616.1| |
score: 281 |
e-value: 9e-74 |
Identity: 63.26% |
Span: 609bp (54.9%) |
Frame: 3 |
| hypothetical protein OsI_16393 [Oryza sativa Indica Group] >gi125590811|gb|EAZ31161.1| hypothetical protein OsJ_15260... |
| Match: gi|116057485|emb|CAL51912.1| |
score: 243 |
e-value: 3e-62 |
Identity: 58.05% |
Span: 612bp (55.2%) |
Frame: 3 |
| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus tauri] |
| Match: gi|159479030|ref|XP_001697601.1| |
score: 243 |
e-value: 2e-62 |
Identity: 55.78% |
Span: 597bp (53.8%) |
Frame: 3 |
| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas reinhardtii] >gi158274211|gb|EDO99994.1| DNA-direct... |
| Match: gi|145346274|ref|XP_001417617.1| |
score: 241 |
e-value: 6e-62 |
Identity: 58.54% |
Span: 612bp (55.2%) |
Frame: 3 |
| predicted protein [Ostreococcus lucimarinus CCE9901] >gi144577844|gb|ABO95910.1| predicted protein [Ostreococcus luci... |
| Match: gi|116785870|gb|ABK23892.1| |
score: 241 |
e-value: 1e-61 |
Identity: 71.08% |
Span: 498bp (44.9%) |
Frame: 3 |
| unknown [Picea sitchensis] |
| Match: gi|198427419|ref|XP_002130595.1| |
score: 229 |
e-value: 2e-58 |
Identity: 53.4% |
Span: 603bp (54.4%) |
Frame: 3 |
| PREDICTED: similar to 25-kDa subunit RNA polymerase [Ciona intestinalis] |
| Match: gi|149287100|gb|ABR23449.1| |
score: 229 |
e-value: 4e-58 |
Identity: 52.66% |
Span: 606bp (54.6%) |
Frame: 3 |
| 25-kDa subunit RNA polymerase [Ornithodoros parkeri] |
| Match: gi|212513848|gb|EEB16264.1| |
score: 228 |
e-value: 5e-58 |
Identity: 51.46% |
Span: 603bp (54.4%) |
Frame: 3 |
| DNA-directed |
| Match: gi|48124579|ref|XP_396561.1| |
score: 225 |
e-value: 5e-57 |
Identity: 51.94% |
Span: 603bp (54.4%) |
Frame: 3 |
| gi|48124579|ref|XP_396561.1| similar to ENSANGP00000006082 [Apis mellifera] |
| Match: gi|156548548|ref|XP_001604962.1| |
score: 224 |
e-value: 1e-56 |
Identity: 51.46% |
Span: 603bp (54.4%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|219428928|ref|XP_002212254.1| |
score: 220 |
e-value: 1e-55 |
Identity: 51.47% |
Span: 597bp (53.8%) |
Frame: 3 |
| hypothetical |
| Match: gi|91087261|ref|XP_975533.1| |
score: 219 |
e-value: 3e-55 |
Identity: 51.46% |
Span: 603bp (54.4%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|31235339|ref|XP_319221.1| |
score: 219 |
e-value: 3e-55 |
Identity: 50.49% |
Span: 603bp (54.4%) |
Frame: 3 |
| gi|31235339|ref|XP_319221.1| ENSANGP00000006082 [Anopheles gambiae] gi|30174740|gb|EAA43596.1| ENSANGP00000006082 [An... |
| Match: gi|193627182|ref|XP_001947888.1| |
score: 219 |
e-value: 3e-55 |
Identity: 50.97% |
Span: 603bp (54.4%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|57525846|ref|NP_001003564.1| |
score: 218 |
e-value: 1e-54 |
Identity: 50.49% |
Span: 603bp (54.4%) |
Frame: 3 |
| hypothetical |
| Match: gi|72109111|ref|XP_783584.1| |
score: 218 |
e-value: 7e-55 |
Identity: 50.97% |
Span: 603bp (54.4%) |
Frame: 3 |
| gi|72109111|ref|XP_783584.1| PREDICTED: similar to DNA directed RNA polymerase II polypeptide E [Strongylocentrotus p... |
| Match: gi|197098756|ref|NP_001126823.1| |
score: 217 |
e-value: 2e-54 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| polymerase |
| Match: gi|1060912|dbj|BAA07406.1| |
score: 217 |
e-value: 1e-54 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| gi|1060912|dbj|BAA07406.1| RPB5 [Homo sapiens] |
| Match: gi|47216655|emb|CAG04853.1| |
score: 217 |
e-value: 1e-54 |
Identity: 50.49% |
Span: 603bp (54.4%) |
Frame: 3 |
| gi|47216655|emb|CAG04853.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|14589951|ref|NP_002686.2| |
score: 217 |
e-value: 2e-54 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| gi|14589951|ref|NP_002686.2| DNA directed RNA polymerase II polypeptide E; polymerase (RNA) II (DNA directed) polypep... |
| Match: gi|124249077|ref|NP_079830.2| |
score: 217 |
e-value: 1e-54 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| polymerase |
| Match: gi|219112619|ref|XP_002178061.1| |
score: 216 |
e-value: 4e-54 |
Identity: 51.27% |
Span: 591bp (53.3%) |
Frame: 3 |
| predicted |
| Match: gi|46255774|gb|AAH34144.1| |
score: 216 |
e-value: 2e-54 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| gi|46255774|gb|AAH34144.1| POLR2E protein [Homo sapiens] |
| Match: gi|56755813|gb|AAW26085.1| |
score: 216 |
e-value: 4e-54 |
Identity: 51.22% |
Span: 612bp (55.2%) |
Frame: 3 |
| gi|56755813|gb|AAW26085.1| SJCHGC05306 protein [Schistosoma japonicum] |
| Match: gi|118103219|ref|XP_418224.2| |
score: 216 |
e-value: 2e-54 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|62858213|ref|NP_001016473.1| |
score: 216 |
e-value: 3e-54 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| gi|62858213|ref|NP_001016473.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus tropicalis] >gi|38051843|gb... |
| Match: gi|194752750|ref|XP_001958682.1| |
score: 215 |
e-value: 6e-54 |
Identity: 50.49% |
Span: 603bp (54.4%) |
Frame: 3 |
| GF12445 |
| Match: gi|209732756|gb|ACI67247.1| |
score: 215 |
e-value: 6e-54 |
Identity: 50% |
Span: 603bp (54.4%) |
Frame: 3 |
| DNA-directed |
| Match: gi|116242767|sp|P19388|RPAB1_HUMAN |
score: 215 |
e-value: 6e-54 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| DNA-directed |
| Match: gi|90083116|dbj|BAE90640.1| |
score: 214 |
e-value: 1e-53 |
Identity: 49.03% |
Span: 603bp (54.4%) |
Frame: 3 |
| unnamed |
| Match: gi|195426896|ref|XP_002061524.1| |
score: 214 |
e-value: 8e-54 |
Identity: 50.49% |
Span: 603bp (54.4%) |
Frame: 3 |
| GK20665 |
| Match: gi|195119282|ref|XP_002004160.1| |
score: 214 |
e-value: 1e-53 |
Identity: 50% |
Span: 603bp (54.4%) |
Frame: 3 |
| GI19761 |
| Match: gi|195026900|ref|XP_001986362.1| |
score: 214 |
e-value: 1e-53 |
Identity: 50% |
Span: 603bp (54.4%) |
Frame: 3 |
| GH20567 |
| Match: gi|19922004|ref|NP_610630.1| |
score: 214 |
e-value: 8e-54 |
Identity: 50.49% |
Span: 603bp (54.4%) |
Frame: 3 |
| gi|19922004|ref|NP_610630.1| CG11979-PA [Drosophila melanogaster] gi|7303678|gb|AAF58728.1| CG11979-PA [Drosophila me... |
| Match: gi|195164101|ref|XP_002022887.1| |
score: 214 |
e-value: 1e-53 |
Identity: 50.49% |
Span: 603bp (54.4%) |
Frame: 3 |
| GL16482 |
| Match: gi|209733016|gb|ACI67377.1| |
score: 213 |
e-value: 2e-53 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| DNA-directed |
| Match: gi|119589953|gb|EAW69547.1| |
score: 213 |
e-value: 2e-53 |
Identity: 49.28% |
Span: 603bp (54.4%) |
Frame: 3 |
| polymerase |
| Match: gi|84000159|ref|NP_001033182.1| |
score: 213 |
e-value: 3e-53 |
Identity: 49.03% |
Span: 603bp (54.4%) |
Frame: 3 |
| polymerase |
| Match: gi|17507947|ref|NP_491961.1| |
score: 213 |
e-value: 2e-53 |
Identity: 49.76% |
Span: 618bp (55.7%) |
Frame: 3 |
| gi|17507947|ref|NP_491961.1| dna directed rna polymerase ii polypeptide e (24.3 kD) (1H427) [Caenorhabditis elegans] ... |
| Match: gi|115459090|ref|NP_001053145.1| |
score: 213 |
e-value: 2e-53 |
Identity: 60.12% |
Span: 489bp (44.1%) |
Frame: 3 |
| Os04g0487300 [Oryza sativa (japonica cultivar-group)] >gi215713497|dbj|BAG94634.1| unnamed protein product [Oryza sat... |
| Match: gi|157747715|ref|XP_001668952.1| |
score: 213 |
e-value: 3e-53 |
Identity: 49.29% |
Span: 618bp (55.7%) |
Frame: 3 |
| Hypothetical |
| Match: gi|196010385|ref|XP_002115057.1| |
score: 212 |
e-value: 4e-53 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| expressed |
| Match: gi|169859434|ref|XP_001836357.1| |
score: 212 |
e-value: 5e-53 |
Identity: 53.73% |
Span: 594bp (53.6%) |
Frame: 3 |
| hypothetical |
| Match: gi|170098869|ref|XP_001880653.1| |
score: 209 |
e-value: 4e-52 |
Identity: 50.75% |
Span: 594bp (53.6%) |
Frame: 3 |
| predicted |
| Match: gi|182676597|sp|Q54EH2|RPAB1_DICDI |
score: 208 |
e-value: 6e-52 |
Identity: 51.72% |
Span: 603bp (54.4%) |
Frame: 3 |
| DNA-directed |
| Match: gi|114674426|ref|XP_512960.2| |
score: 207 |
e-value: 1e-51 |
Identity: 50% |
Span: 573bp (51.7%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|125572361|gb|EAZ13876.1| |
score: 207 |
e-value: 1e-51 |
Identity: 53.37% |
Span: 540bp (48.7%) |
Frame: 3 |
| hypothetical |
| Match: gi|156396586|ref|XP_001637474.1| |
score: 207 |
e-value: 2e-51 |
Identity: 50.99% |
Span: 591bp (53.3%) |
Frame: 3 |
| predicted |
| Match: gi|195150967|ref|XP_002016421.1| |
score: 206 |
e-value: 4e-51 |
Identity: 47.83% |
Span: 606bp (54.6%) |
Frame: 3 |
| GL10501 |
| Match: gi|198457753|ref|XP_002138441.1| |
score: 204 |
e-value: 1e-50 |
Identity: 47.34% |
Span: 606bp (54.6%) |
Frame: 3 |
| GA24393 |
| Match: gi|149034606|gb|EDL89343.1| |
score: 199 |
e-value: 3e-49 |
Identity: 49.21% |
Span: 558bp (50.3%) |
Frame: 3 |
| rCG29511, |
| Match: gi|73987353|ref|XP_854641.1| |
score: 199 |
e-value: 4e-49 |
Identity: 47.09% |
Span: 603bp (54.4%) |
Frame: 3 |
| gi|73987353|ref|XP_854641.1| PREDICTED: similar to DNA directed RNA polymerase II polypeptide E isoform 1 [Canis fami... |
| Match: gi|194693176|gb|ACF80672.1| |
score: 198 |
e-value: 8e-49 |
Identity: 74.02% |
Span: 381bp (34.4%) |
Frame: 3 |
| unknown [Zea mays] |
| Match: gi|211964342|gb|EEA99537.1| |
score: 196 |
e-value: 3e-48 |
Identity: 50.49% |
Span: 606bp (54.6%) |
Frame: 3 |
| DNA-directed |
| Match: gi|66802850|ref|XP_635268.1| |
score: 193 |
e-value: 3e-47 |
Identity: 53.19% |
Span: 558bp (50.3%) |
Frame: 3 |
| gi|66802850|ref|XP_635268.1| RNA polymerase I core subunit [Dictyostelium discoideum] >gi|60463617|gb|EAL61802.1| RNA... |
| Match: gi|58259413|ref|XP_567119.1| |
score: 191 |
e-value: 7e-47 |
Identity: 43.46% |
Span: 600bp (54.1%) |
Frame: 3 |
| DNA-directed |
| Match: gi|168036467|ref|XP_001770728.1| |
score: 188 |
e-value: 6e-46 |
Identity: 47.85% |
Span: 606bp (54.6%) |
Frame: 3 |
| predicted |
| Match: gi|194247246|emb|CAQ40646.1| |
score: 186 |
e-value: 4e-45 |
Identity: 46.57% |
Span: 606bp (54.6%) |
Frame: 3 |
| DNA-directed |
| Match: gi|156101473|ref|XP_001616430.1| |
score: 185 |
e-value: 5e-45 |
Identity: 46.08% |
Span: 606bp (54.6%) |
Frame: 3 |
| DNA-directed |
| Match: gi|71029810|ref|XP_764548.1| |
score: 185 |
e-value: 5e-45 |
Identity: 48.04% |
Span: 606bp (54.6%) |
Frame: 3 |
| DNA-directed |
| Match: gi|213405090|ref|XP_002173317.1| |
score: 184 |
e-value: 1e-44 |
Identity: 48.33% |
Span: 609bp (54.9%) |
Frame: 3 |
| DNA-directed |
| Match: gi|149034611|gb|EDL89348.1| |
score: 183 |
e-value: 3e-44 |
Identity: 44.92% |
Span: 546bp (49.2%) |
Frame: 3 |
| rCG29511, |
| Match: gi|15242916|ref|NP_200606.1| |
score: 183 |
e-value: 3e-44 |
Identity: 42.86% |
Span: 618bp (55.7%) |
Frame: 3 |
| gi|15242916|ref|NP_200606.1| eukaryotic rpb5 RNA polymerase subunit family [Arabidopsis thaliana] gi|9758367|dbj|BAB0... |
| Match: gi|198471708|ref|XP_002133816.1| |
score: 183 |
e-value: 2e-44 |
Identity: 45.59% |
Span: 597bp (53.8%) |
Frame: 3 |
| GA22581 |
| Match: gi|124514006|ref|XP_001350359.1| |
score: 182 |
e-value: 3e-44 |
Identity: 46.08% |
Span: 606bp (54.6%) |
Frame: 3 |
| DNA-directed |
| Match: gi|84997627|ref|XP_953535.1| |
score: 182 |
e-value: 3e-44 |
Identity: 47.55% |
Span: 606bp (54.6%) |
Frame: 3 |
| DNA-directed |
| Match: gi|156089419|ref|XP_001612116.1| |
score: 181 |
e-value: 8e-44 |
Identity: 45.81% |
Span: 603bp (54.4%) |
Frame: 3 |
| RNA |
| Match: gi|109122773|ref|XP_001117242.1| |
score: 180 |
e-value: 2e-43 |
Identity: 44.09% |
Span: 543bp (49.0%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|209878710|ref|XP_002140796.1| |
score: 179 |
e-value: 5e-43 |
Identity: 47.5% |
Span: 594bp (53.6%) |
Frame: 3 |
| DNA-directed |
| Match: gi|19114099|ref|NP_593187.1| |
score: 179 |
e-value: 4e-43 |
Identity: 44.71% |
Span: 609bp (54.9%) |
Frame: 3 |
| gi|19114099|ref|NP_593187.1| dna-directed rna polymerase i ii and iii 24 kd polypeptide [Schizosaccharomyces pombe] g... |
| Match: gi|66358302|ref|XP_626329.1| |
score: 177 |
e-value: 1e-42 |
Identity: 46.5% |
Span: 594bp (53.6%) |
Frame: 3 |
| gi|66358302|ref|XP_626329.1| putative DNA-directed RNA polymerase 2 [Cryptosporidium parvum] >gi|46228002|gb|EAK88922... |
| Match: gi|67624263|ref|XP_668414.1| |
score: 177 |
e-value: 1e-42 |
Identity: 46.5% |
Span: 594bp (53.6%) |
Frame: 3 |
| gi|67624263|ref|XP_668414.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis] >gi|54659611|gb|EAL38180.1| DNA-... |
| Match: gi|11994623|dbj|BAB02760.1| |
score: 177 |
e-value: 1e-42 |
Identity: 45.93% |
Span: 618bp (55.7%) |
Frame: 3 |
| gi|11994623|dbj|BAB02760.1| RNA polymerase-like protein [Arabidopsis thaliana] |
| Match: gi|66543279|ref|XP_623541.1| |
score: 172 |
e-value: 6e-41 |
Identity: 45.45% |
Span: 513bp (46.3%) |
Frame: 3 |
| gi|66543279|ref|XP_623541.1| PREDICTED: similar to ENSANGP00000006082 [Apis mellifera] |
| Match: gi|145230680|ref|XP_001389604.1| |
score: 166 |
e-value: 4e-39 |
Identity: 41.78% |
Span: 609bp (54.9%) |
Frame: 3 |
| hypothetical |
| Match: gi|156848515|ref|XP_001647139.1| |
score: 166 |
e-value: 4e-39 |
Identity: 42.58% |
Span: 600bp (54.1%) |
Frame: 3 |
| hypothetical |
| Match: gi|6319630|ref|NP_009712.1| |
score: 165 |
e-value: 7e-39 |
Identity: 42.11% |
Span: 600bp (54.1%) |
Frame: 3 |
| gi|6319630|ref|NP_009712.1| 25-kDa RNA polymerase subunit (common to polymerases I, II and III); Rpb5p [Saccharomyces... |
| Match: gi|1680605|gb|AAC60556.1|S59774_1 |
score: 164 |
e-value: 2e-38 |
Identity: 42.11% |
Span: 600bp (54.1%) |
Frame: 3 |
| RNA |
| Match: gi|50290313|ref|XP_447588.1| |
score: 163 |
e-value: 2e-38 |
Identity: 42.11% |
Span: 600bp (54.1%) |
Frame: 3 |
| gi|50290313|ref|XP_447588.1| unnamed protein product [Candida glabrata] >gi|49526898|emb|CAG60525.1| unnamed protein ... |
| Match: gi|162606200|ref|XP_001713615.1| |
score: 162 |
e-value: 6e-38 |
Identity: 39.34% |
Span: 606bp (54.6%) |
Frame: 3 |
| RNA |
| Match: gi|167379694|ref|XP_001735242.1| |
score: 162 |
e-value: 5e-38 |
Identity: 40.89% |
Span: 600bp (54.1%) |
Frame: 3 |
| DNA-directed |
| Match: gi|211586191|emb|CAP93939.1| |
score: 162 |
e-value: 4e-38 |
Identity: 43.11% |
Span: 609bp (54.9%) |
Frame: 3 |
| Pc16g12690 |
| Match: gi|126275976|ref|XP_001386931.1| |
score: 162 |
e-value: 6e-38 |
Identity: 41.83% |
Span: 597bp (53.8%) |
Frame: 3 |
| DNA-directed |
| Match: gi|67469583|ref|XP_650770.1| |
score: 162 |
e-value: 6e-38 |
Identity: 40.39% |
Span: 600bp (54.1%) |
Frame: 3 |
| gi|67469583|ref|XP_650770.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica HM-1:IMSS] >gi|67464767|ref... |
| Match: gi|119495104|ref|XP_001264345.1| |
score: 161 |
e-value: 1e-37 |
Identity: 40.43% |
Span: 624bp (56.3%) |
Frame: 3 |
| RNA |
| Match: gi|160331077|ref|XP_001712246.1| |
score: 161 |
e-value: 8e-38 |
Identity: 40.09% |
Span: 609bp (54.9%) |
Frame: 3 |
| rpabc5 |
| Match: gi|67516941|ref|XP_658356.1| |
score: 160 |
e-value: 2e-37 |
Identity: 43.56% |
Span: 609bp (54.9%) |
Frame: 3 |
| gi|67516941|ref|XP_658356.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4] >gi|40746238|gb|EAA65394.1|... |
| Match: gi|121701167|ref|XP_001268848.1| |
score: 160 |
e-value: 2e-37 |
Identity: 40% |
Span: 624bp (56.3%) |
Frame: 3 |
| RNA |
| Match: gi|45190642|ref|NP_984896.1| |
score: 160 |
e-value: 1e-37 |
Identity: 41.15% |
Span: 600bp (54.1%) |
Frame: 3 |
| gi|45190642|ref|NP_984896.1| AER036Wp [Eremothecium gossypii] >gi|44983621|gb|AAS52720.1| AER036Wp [Eremothecium goss... |
| Match: gi|50550027|ref|XP_502486.1| |
score: 159 |
e-value: 3e-37 |
Identity: 41.9% |
Span: 603bp (54.4%) |
Frame: 3 |
| gi|50550027|ref|XP_502486.1| hypothetical protein [Yarrowia lipolytica] >gi|49648354|emb|CAG80674.1| unnamed protein ... |
|
| 91 lower scoring hits censored -- only 100 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 6 hits recorded |
| Match: At3G22320.1 |
score: 338 |
e-value: 5e-93 |
Identity: 78.92% |
Span: 612bp (55.2%) |
Frame: 3 |
| Symbols: ATRPABC24.3 | ATRPABC24.3 ("Arabidopsis thaliana RNA polymerase I, II and III 24.3 kDa subunit"); DNA bindi... |
| Match: At5G57980.1 |
score: 183 |
e-value: 2e-46 |
Identity: 42.86% |
Span: 618bp (55.7%) |
Frame: 3 |
| eukaryotic rpb5 RNA polymerase subunit family protein | chr5:23486276-23486994 REVERSE |
| Match: At2G41340.1 |
score: 141 |
e-value: 6e-34 |
Identity: 39.41% |
Span: 606bp (54.6%) |
Frame: 3 |
| eukaryotic rpb5 RNA polymerase subunit family protein | chr2:17236104-17237520 FORWARD |
| Match: At3G57080.1 |
score: 135 |
e-value: 3e-32 |
Identity: 37.75% |
Span: 609bp (54.9%) |
Frame: 3 |
| eukaryotic rpb5 RNA polymerase subunit family protein | chr3:21136857-21138449 FORWARD |
| Match: At3G54490.1 |
score: 115 |
e-value: 6e-26 |
Identity: 32.84% |
Span: 600bp (54.1%) |
Frame: 3 |
| eukaryotic rpb5 RNA polymerase subunit family protein | chr3:20184651-20186275 FORWARD |
| Match: At3G16680.1 |
score: 75.1 |
e-value: 7e-14 |
Identity: 46.84% |
Span: 228bp (20.6%) |
Frame: 3 |
| DNA binding / DNA-directed RNA polymerase | chr3:5683703-5684136 FORWARD |
|
| swissprot [blastx] | Showing best 29 hits recorded |
| Match: Q5R587 |
score: 217 |
e-value: 1e-55 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1 |
| Match: Q80UW8 |
score: 217 |
e-value: 8e-56 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=2 SV=1 |
| Match: B0BNE2 |
score: 217 |
e-value: 8e-56 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1 |
| Match: P19388 |
score: 215 |
e-value: 4e-55 |
Identity: 49.51% |
Span: 603bp (54.4%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4 |
| Match: Q2T9T3 |
score: 213 |
e-value: 2e-54 |
Identity: 49.03% |
Span: 603bp (54.4%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos taurus GN=POLR2E PE=2 SV=1 |
| Match: Q9N5K2 |
score: 213 |
e-value: 1e-54 |
Identity: 49.76% |
Span: 618bp (55.7%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans GN=H27M09.2 PE=2 SV=1 |
| Match: Q54EH2 |
score: 208 |
e-value: 4e-53 |
Identity: 51.72% |
Span: 603bp (54.4%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2 |
| Match: Q09191 |
score: 179 |
e-value: 2e-44 |
Identity: 44.71% |
Span: 609bp (54.9%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Schizosaccharomyces pombe GN=rpb5 PE=1 SV=1 |
| Match: P20434 |
score: 165 |
e-value: 5e-40 |
Identity: 42.11% |
Span: 600bp (54.1%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Saccharomyces cerevisiae GN=RPB5 PE=1 SV=1 |
| Match: Q6FQA6 |
score: 163 |
e-value: 1e-39 |
Identity: 42.11% |
Span: 600bp (54.1%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Candida glabrata GN=RPB5 PE=3 SV=1 |
| Match: Q757H7 |
score: 160 |
e-value: 9e-39 |
Identity: 41.15% |
Span: 600bp (54.1%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Ashbya gossypii GN=RPB5 PE=3 SV=1 |
| Match: Q6CA26 |
score: 159 |
e-value: 2e-38 |
Identity: 41.9% |
Span: 603bp (54.4%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Yarrowia lipolytica GN=RPB5 PE=3 SV=1 |
| Match: Q6CJ62 |
score: 157 |
e-value: 8e-38 |
Identity: 41.83% |
Span: 597bp (53.8%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Kluyveromyces lactis GN=RPB5 PE=3 SV=1 |
| Match: Q6BIJ0 |
score: 156 |
e-value: 2e-37 |
Identity: 40.67% |
Span: 600bp (54.1%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Debaryomyces hansenii GN=RPB5 PE=3 SV=1 |
| Match: Q9P4B9 |
score: 155 |
e-value: 4e-37 |
Identity: 41.35% |
Span: 597bp (53.8%) |
Frame: 3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1 |
| Match: Q9V116 |
score: 79.7 |
e-value: 3e-14 |
Identity: 52.05% |
Span: 219bp (19.7%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Pyrococcus abyssi GN=rpoH PE=3 SV=1 |
| Match: O74019 |
score: 79.3 |
e-value: 3e-14 |
Identity: 52.05% |
Span: 219bp (19.7%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Pyrococcus horikoshii GN=rpoH PE=3 SV=1 |
| Match: Q8U0M2 |
score: 77.4 |
e-value: 1e-13 |
Identity: 52.05% |
Span: 219bp (19.7%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Pyrococcus furiosus GN=rpoH PE=3 SV=1 |
| Match: Q12WS3 |
score: 76.6 |
e-value: 2e-13 |
Identity: 45.21% |
Span: 219bp (19.7%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Methanococcoides burtonii (strain DSM 6242) GN=rpoH PE=3 SV=1 |
| Match: Q5JE31 |
score: 76.3 |
e-value: 3e-13 |
Identity: 50.68% |
Span: 219bp (19.7%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Pyrococcus kodakaraensis GN=rpoH PE=3 SV=1 |
| Match: A2BN32 |
score: 73.2 |
e-value: 3e-12 |
Identity: 45.21% |
Span: 219bp (19.7%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpoH PE=3 SV=1 |
| Match: O27122 |
score: 72 |
e-value: 6e-12 |
Identity: 47.89% |
Span: 213bp (19.2%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Methanobacterium thermoautotrophicum GN=rpoH PE=1 SV=1 |
| Match: Q58443 |
score: 71.6 |
e-value: 7e-12 |
Identity: 41.89% |
Span: 222bp (20.0%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Methanocaldococcus jannaschii GN=rpoH PE=1 SV=1 |
| Match: A0B555 |
score: 71.2 |
e-value: 1e-11 |
Identity: 45.83% |
Span: 216bp (19.5%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpoH |
| Match: A3DMP2 |
score: 70.5 |
e-value: 2e-11 |
Identity: 46.58% |
Span: 219bp (19.7%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpoH |
| Match: P11521 |
score: 70.5 |
e-value: 2e-11 |
Identity: 41.89% |
Span: 222bp (20.0%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Sulfolobus acidocaldarius GN=rpoH |
| Match: Q5UPX7 |
score: 70.1 |
e-value: 2e-11 |
Identity: 39.76% |
Span: 249bp (22.5%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit 5 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L235 |
| Match: P31815 |
score: 70.1 |
e-value: 2e-11 |
Identity: 50.72% |
Span: 207bp (18.7%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Thermococcus celer GN=rpoH |
| Match: O28394 |
score: 69.7 |
e-value: 3e-11 |
Identity: 44.74% |
Span: 228bp (20.6%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit H OS=Archaeoglobus fulgidus GN=rpoH |
|