| genbank/nr [blastx] | Showing best 25 hits recorded |
| Match: gi|225429944|ref|XP_002281273.1| |
score: 388 |
e-value: 6e-106 |
Identity: 77.35% |
Span: 702bp (62.8%) |
Frame: 3 |
| PREDICTED: hypothetical protein [Vitis vinifera] |
| Match: gi|270231531|emb|CBI20856.1| |
score: 388 |
e-value: 7e-106 |
Identity: 77.68% |
Span: 699bp (62.6%) |
Frame: 3 |
| unnamed protein product [Vitis vinifera] |
| Match: gi|224141741|ref|XP_002324223.1| |
score: 385 |
e-value: 5e-105 |
Identity: 77.68% |
Span: 699bp (62.6%) |
Frame: 3 |
| predicted protein [Populus trichocarpa] >gi222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa] |
| Match: gi|15231368|ref|NP_190207.1| |
score: 383 |
e-value: 2e-104 |
Identity: 76.27% |
Span: 708bp (63.4%) |
Frame: 3 |
| 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] >gi79314404|ref|NP_001030817.1| 3' exori... |
| Match: gi|224089018|ref|XP_002308603.1| |
score: 369 |
e-value: 4e-100 |
Identity: 74.68% |
Span: 699bp (62.6%) |
Frame: 3 |
| predicted protein [Populus trichocarpa] >gi222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa] |
| Match: gi|255550900|ref|XP_002516498.1| |
score: 350 |
e-value: 1e-94 |
Identity: 79.61% |
Span: 618bp (55.3%) |
Frame: 3 |
| Exosome complex exonuclease RRP46, putative [Ricinus communis] >gi223544318|gb|EEF45839.1| Exosome complex exonucleas... |
| Match: gi|124360770|gb|ABD33427.2| |
score: 347 |
e-value: 1e-93 |
Identity: 70.13% |
Span: 693bp (62.0%) |
Frame: 3 |
| Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease [Medicago truncatula] |
| Match: gi|284793943|pdb|3HKM|A |
score: 313 |
e-value: 3e-83 |
Identity: 66.38% |
Span: 696bp (62.3%) |
Frame: 3 |
| Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46 >gi284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Ory... |
| Match: gi|115456671|ref|NP_001051936.1| |
score: 313 |
e-value: 3e-83 |
Identity: 66.38% |
Span: 696bp (62.3%) |
Frame: 3 |
| Os03g0854200 [Oryza sativa (japonica cultivar-group)] >gi57222448|gb|AAO66540.2| putative exosome component [Oryza sa... |
| Match: gi|257062723|gb|ACV40374.1| |
score: 311 |
e-value: 9e-83 |
Identity: 66.38% |
Span: 696bp (62.3%) |
Frame: 3 |
| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp. vulgare] |
| Match: gi|218194134|gb|EEC76561.1| |
score: 310 |
e-value: 2e-82 |
Identity: 65.95% |
Span: 696bp (62.3%) |
Frame: 3 |
| hypothetical protein OsI_14380 [Oryza sativa Indica Group] |
| Match: gi|242032199|ref|XP_002463494.1| |
score: 308 |
e-value: 1e-81 |
Identity: 64.22% |
Span: 696bp (62.3%) |
Frame: 3 |
| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor] >gi241917348|gb|EER90492.1| hypothetical protein SORBIDRA... |
| Match: gi|226504202|ref|NP_001146469.1| |
score: 300 |
e-value: 2e-79 |
Identity: 62.5% |
Span: 696bp (62.3%) |
Frame: 3 |
| hypothetical protein LOC100280057 [Zea mays] >gi219887423|gb|ACL54086.1| unknown [Zea mays] |
| Match: gi|195629840|gb|ACG36561.1| |
score: 299 |
e-value: 3e-79 |
Identity: 62.5% |
Span: 696bp (62.3%) |
Frame: 3 |
| exosome complex exonuclease RRP46 [Zea mays] |
| Match: gi|222626193|gb|EEE60325.1| |
score: 283 |
e-value: 3e-74 |
Identity: 60.08% |
Span: 696bp (62.3%) |
Frame: 3 |
| hypothetical protein OsJ_13416 [Oryza sativa Japonica Group] |
| Match: gi|168045848|ref|XP_001775388.1| |
score: 250 |
e-value: 2e-64 |
Identity: 51.97% |
Span: 687bp (61.5%) |
Frame: 3 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162673333|gb|EDQ59858.1| predicted protein [Physcomitrella... |
| Match: gi|224031563|gb|ACN34857.1| |
score: 166 |
e-value: 4e-39 |
Identity: 71.43% |
Span: 315bp (28.2%) |
Frame: 3 |
| unknown [Zea mays] |
| Match: gi|260791023|ref|XP_002590540.1| |
score: 155 |
e-value: 6e-36 |
Identity: 38.12% |
Span: 669bp (59.9%) |
Frame: 3 |
| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae] >gi229275734|gb|EEN46551.1| hypothetical protein BRAF... |
| Match: gi|291226757|ref|XP_002733360.1| |
score: 154 |
e-value: 1e-35 |
Identity: 39.6% |
Span: 606bp (54.3%) |
Frame: 3 |
| PREDICTED: exosome component 5-like, partial [Saccoglossus kowalevskii] |
| Match: gi|122920910|pdb|2NN6|D |
score: 150 |
e-value: 3e-34 |
Identity: 36.53% |
Span: 657bp (58.8%) |
Frame: 3 |
| Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 |
| Match: gi|109124911|ref|XP_001102687.1| |
score: 150 |
e-value: 3e-34 |
Identity: 36.53% |
Span: 657bp (58.8%) |
Frame: 3 |
| PREDICTED: exosome component 5 [Macaca mulatta] |
| Match: gi|21693160|gb|AAM75154.1| |
score: 150 |
e-value: 3e-34 |
Identity: 36.53% |
Span: 657bp (58.8%) |
Frame: 3 |
| chronic myelogenous leukemia tumor antigen 28 [Homo sapiens] |
| Match: gi|14043511|gb|AAH07742.1| |
score: 150 |
e-value: 3e-34 |
Identity: 36.53% |
Span: 657bp (58.8%) |
Frame: 3 |
| Exosome component 5 [Homo sapiens] >gi78394993|gb|AAI07697.1| Exosome component 5 [Homo sapiens] >gi|119577442|gb|EAW... |
| Match: gi|47174864|ref|NP_064543.3| |
score: 150 |
e-value: 3e-34 |
Identity: 36.53% |
Span: 657bp (58.8%) |
Frame: 3 |
| exosome complex exonuclease RRP46 [Homo sapiens] >gi14285757|sp|Q9NQT4.1|EXOS5_HUMAN RecName: Full=Exosome complex ex... |
| Match: gi|114677471|ref|XP_001152170.1| |
score: 149 |
e-value: 4e-34 |
Identity: 36.53% |
Span: 657bp (58.8%) |
Frame: 3 |
| PREDICTED: exosome component Rrp46 isoform 2 [Pan troglodytes] |
|
| 198 lower scoring hits censored -- only 25 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 8 hits recorded |
| Match: At3G46210.5 |
score: 383 |
e-value: 1e-106 |
Identity: 76.27% |
Span: 708bp (63.4%) |
Frame: 3 |
| 3' exoribonuclease family domain 1-containing protein | chr3:16987945-16989474 REVERSE |
| Match: At3G46210.4 |
score: 383 |
e-value: 1e-106 |
Identity: 76.27% |
Span: 708bp (63.4%) |
Frame: 3 |
| 3'-5'-exoribonuclease/ RNA binding | chr3:16987945-16989474 REVERSE |
| Match: At3G46210.3 |
score: 383 |
e-value: 1e-106 |
Identity: 76.27% |
Span: 708bp (63.4%) |
Frame: 3 |
| 3'-5'-exoribonuclease/ RNA binding | chr3:16987945-16989474 REVERSE |
| Match: At3G46210.2 |
score: 383 |
e-value: 1e-106 |
Identity: 76.27% |
Span: 708bp (63.4%) |
Frame: 3 |
| 3'-5'-exoribonuclease/ RNA binding | chr3:16987945-16989474 REVERSE |
| Match: At3G46210.1 |
score: 383 |
e-value: 1e-106 |
Identity: 76.27% |
Span: 708bp (63.4%) |
Frame: 3 |
| 3' exoribonuclease family domain 1-containing protein | chr3:16987945-16989474 REVERSE |
| Match: At2G07110.1 |
score: 94.4 |
e-value: 1e-19 |
Identity: 50.91% |
Span: 276bp (24.7%) |
Frame: 3 |
| similar to 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] (TAIR:AT3G46210.5); similar ... |
| Match: At3G61620.1 |
score: 84 |
e-value: 2e-16 |
Identity: 30.72% |
Span: 468bp (41.9%) |
Frame: 3 |
| Symbols: RRP41 | RRP41 (Ribosomal RNA Processing 41); 3'-5'-exoribonuclease/ RNA binding | chr3:22812357-22813885 RE... |
| Match: At4G27490.1 |
score: 69.7 |
e-value: 3e-12 |
Identity: 29.34% |
Span: 480bp (43.0%) |
Frame: 3 |
| 3' exoribonuclease family domain 1-containing protein | chr4:13739967-13741653 FORWARD |
|
| swissprot [blastx] | Showing best 25 hits recorded |
| Match: Q9NQT4 |
score: 150 |
e-value: 2e-35 |
Identity: 36.53% |
Span: 657bp (58.8%) |
Frame: 3 |
| Exosome complex exonuclease RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1 |
| Match: Q9CRA8 |
score: 148 |
e-value: 8e-35 |
Identity: 36.07% |
Span: 657bp (58.8%) |
Frame: 3 |
| Exosome complex exonuclease RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1 |
| Match: Q4JB27 |
score: 82.8 |
e-value: 4e-15 |
Identity: 27.63% |
Span: 657bp (58.8%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius GN=Saci_0610 PE=3 SV=1 |
| Match: O59223 |
score: 82.8 |
e-value: 4e-15 |
Identity: 31.98% |
Span: 489bp (43.8%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii GN=PH1549 PE=3 SV=1 |
| Match: Q9V119 |
score: 81.6 |
e-value: 9e-15 |
Identity: 31.98% |
Span: 489bp (43.8%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi GN=PYRAB06100 PE=1 SV=1 |
| Match: A2BKC0 |
score: 81.6 |
e-value: 9e-15 |
Identity: 25.23% |
Span: 639bp (57.2%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1 |
| Match: Q5JIR6 |
score: 81.3 |
e-value: 1e-14 |
Identity: 32.56% |
Span: 489bp (43.8%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis GN=TK1634 PE=3 SV=1 |
| Match: Q921I9 |
score: 80.9 |
e-value: 2e-14 |
Identity: 31.74% |
Span: 468bp (41.9%) |
Frame: 3 |
| Exosome complex exonuclease RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3 |
| Match: Q9NPD3 |
score: 80.9 |
e-value: 2e-14 |
Identity: 31.74% |
Span: 468bp (41.9%) |
Frame: 3 |
| Exosome complex exonuclease RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3 |
| Match: Q7YRA3 |
score: 80.9 |
e-value: 2e-14 |
Identity: 31.74% |
Span: 468bp (41.9%) |
Frame: 3 |
| Exosome complex exonuclease RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3 |
| Match: B6YSI2 |
score: 80.9 |
e-value: 2e-14 |
Identity: 32.56% |
Span: 489bp (43.8%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus (strain NA1) GN=TON_0030 PE=3 SV=1 |
| Match: Q8U0L9 |
score: 80.5 |
e-value: 2e-14 |
Identity: 31.4% |
Span: 489bp (43.8%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus GN=PF1568 PE=3 SV=1 |
| Match: Q97BZ5 |
score: 80.1 |
e-value: 3e-14 |
Identity: 31.33% |
Span: 468bp (41.9%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium GN=TV0310 PE=3 SV=1 |
| Match: O29757 |
score: 79 |
e-value: 6e-14 |
Identity: 29.05% |
Span: 498bp (44.6%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus GN=AF_0493 PE=1 SV=1 |
| Match: Q9HIP2 |
score: 78.6 |
e-value: 8e-14 |
Identity: 30.12% |
Span: 468bp (41.9%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum GN=Ta1293 PE=3 SV=1 |
| Match: Q17533 |
score: 77 |
e-value: 2e-13 |
Identity: 32.53% |
Span: 468bp (41.9%) |
Frame: 3 |
| Putative exosome complex exonuclease RRP41 OS=Caenorhabditis elegans GN=exos-4.1 PE=2 SV=2 |
| Match: O26779 |
score: 77 |
e-value: 2e-13 |
Identity: 28.71% |
Span: 573bp (51.3%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Methanobacterium thermoautotrophicum GN=MTH_683 PE=3 SV=1 |
| Match: O42894 |
score: 75.9 |
e-value: 5e-13 |
Identity: 34.43% |
Span: 363bp (32.5%) |
Frame: 3 |
| Exosome complex component rrp46 OS=Schizosaccharomyces pombe GN=rrp46 PE=2 SV=1 |
| Match: C5A2B9 |
score: 75.5 |
e-value: 6e-13 |
Identity: 30.81% |
Span: 489bp (43.8%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_203... |
| Match: Q8ZVM9 |
score: 75.5 |
e-value: 6e-13 |
Identity: 29.34% |
Span: 471bp (42.2%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum GN=PAE2207 PE=3 SV=1 |
| Match: A8WQQ5 |
score: 74.7 |
e-value: 1e-12 |
Identity: 33.54% |
Span: 444bp (39.7%) |
Frame: 3 |
| Putative exosome complex exonuclease RRP41 OS=Caenorhabditis briggsae GN=exos-4.1 PE=3 SV=1 |
| Match: A1RST0 |
score: 74.3 |
e-value: 1e-12 |
Identity: 28.14% |
Span: 471bp (42.2%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1 |
| Match: Q8TYC1 |
score: 74.3 |
e-value: 1e-12 |
Identity: 30.72% |
Span: 468bp (41.9%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri GN=MK0381 PE=3 SV=1 |
| Match: Q975G8 |
score: 73.9 |
e-value: 2e-12 |
Identity: 28.48% |
Span: 468bp (41.9%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii GN=ST0443 PE=3 SV=1 |
| Match: Q8PTT8 |
score: 73.9 |
e-value: 2e-12 |
Identity: 30.12% |
Span: 468bp (41.9%) |
Frame: 3 |
| Probable exosome complex exonuclease 1 OS=Methanosarcina mazei GN=MM_2623 PE=3 SV=1 |
|
| 6 lower scoring hits censored -- only 25 best hits are stored. |
