| genbank/nr [blastx] | Showing best 25 hits recorded |
| Match: gi|224100817|ref|XP_002312025.1| |
score: 511 |
e-value: 1e-142 |
Identity: 70.72% |
Span: 1077bp (59.6%) |
Frame: 3 |
| predicted protein [Populus trichocarpa] >gi222851845|gb|EEE89392.1| predicted protein [Populus trichocarpa] |
| Match: gi|270244555|emb|CBI31488.1| |
score: 499 |
e-value: 6e-139 |
Identity: 70.67% |
Span: 1020bp (56.4%) |
Frame: 3 |
| unnamed protein product [Vitis vinifera] |
| Match: gi|225449104|ref|XP_002276664.1| |
score: 498 |
e-value: 1e-138 |
Identity: 70.47% |
Span: 1020bp (56.4%) |
Frame: 3 |
| PREDICTED: hypothetical protein [Vitis vinifera] |
| Match: gi|42572641|ref|NP_974416.1| |
score: 490 |
e-value: 2e-136 |
Identity: 66.67% |
Span: 1068bp (59.1%) |
Frame: 3 |
| pseudouridine synthase family protein [Arabidopsis thaliana] >gi229891781|sp|Q5M721.2|PUS5_ARATH RecName: Full=RNA ps... |
| Match: gi|10045559|emb|CAC07917.1| |
score: 483 |
e-value: 2e-134 |
Identity: 65.4% |
Span: 1068bp (59.1%) |
Frame: 3 |
| putative protein [Arabidopsis thaliana] |
| Match: gi|226724701|sp|Q0DST9.2|PUS5_ORYSJ |
score: 451 |
e-value: 2e-124 |
Identity: 62.77% |
Span: 1077bp (59.6%) |
Frame: 3 |
| RecName: Full=RNA pseudourine synthase 5; AltName: Full=RNA-uridine isomerase 5; AltName: Full=RNA pseudouridylate sy... |
| Match: gi|195621906|gb|ACG32783.1| |
score: 424 |
e-value: 2e-116 |
Identity: 60.89% |
Span: 1044bp (57.7%) |
Frame: 3 |
| RNA binding protein [Zea mays] |
| Match: gi|222624713|gb|EEE58845.1| |
score: 424 |
e-value: 2e-116 |
Identity: 61.82% |
Span: 1026bp (56.7%) |
Frame: 3 |
| hypothetical protein OsJ_10432 [Oryza sativa Japonica Group] |
| Match: gi|218192587|gb|EEC75014.1| |
score: 420 |
e-value: 3e-115 |
Identity: 61.54% |
Span: 1026bp (56.7%) |
Frame: 3 |
| hypothetical protein OsI_11092 [Oryza sativa Indica Group] |
| Match: gi|22331748|ref|NP_190794.2| |
score: 389 |
e-value: 8e-106 |
Identity: 67.97% |
Span: 840bp (46.5%) |
Frame: 3 |
| pseudouridine synthase family protein [Arabidopsis thaliana] >gi56744228|gb|AAW28554.1| At3g52260 [Arabidopsis thaliana] |
| Match: gi|17978940|gb|AAL47436.1| |
score: 385 |
e-value: 7e-105 |
Identity: 67.62% |
Span: 840bp (46.5%) |
Frame: 3 |
| AT3g52260/T25B15_30 [Arabidopsis thaliana] |
| Match: gi|168061155|ref|XP_001782556.1| |
score: 347 |
e-value: 4e-93 |
Identity: 52.34% |
Span: 1026bp (56.7%) |
Frame: 3 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162665963|gb|EDQ52631.1| predicted protein [Physcomitrella... |
| Match: gi|194696406|gb|ACF82287.1| |
score: 292 |
e-value: 8e-77 |
Identity: 64.73% |
Span: 666bp (36.8%) |
Frame: 3 |
| unknown [Zea mays] |
| Match: gi|158334165|ref|YP_001515337.1| |
score: 251 |
e-value: 2e-64 |
Identity: 41.14% |
Span: 1038bp (57.4%) |
Frame: 3 |
| RluA family pseudouridine synthase [Acaryochloris marina MBIC11017] >gi158304406|gb|ABW26023.1| pseudouridine synthas... |
| Match: gi|218442079|ref|YP_002380408.1| |
score: 250 |
e-value: 5e-64 |
Identity: 43.06% |
Span: 1038bp (57.4%) |
Frame: 3 |
| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7424] >gi218174807|gb|ACK73540.1| pseudouridine synthase, Rlu... |
| Match: gi|126657910|ref|ZP_01729063.1| |
score: 242 |
e-value: 1e-61 |
Identity: 42.64% |
Span: 999bp (55.3%) |
Frame: 3 |
| probable pseudouridine synthase [Cyanothece sp. CCY0110] >gi126620850|gb|EAZ91566.1| probable pseudouridine synthase ... |
| Match: gi|67924151|ref|ZP_00517595.1| |
score: 242 |
e-value: 1e-61 |
Identity: 41.52% |
Span: 1026bp (56.7%) |
Frame: 3 |
| Pseudouridine synthase, RluD [Crocosphaera watsonii WH 8501] >gi67854003|gb|EAM49318.1| Pseudouridine synthase, RluD ... |
| Match: gi|196258801|ref|ZP_03157334.1| |
score: 239 |
e-value: 8e-61 |
Identity: 42.61% |
Span: 1035bp (57.2%) |
Frame: 3 |
| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7822] >gi196200121|gb|EDX94943.1| pseudouridine synthase, Rlu... |
| Match: gi|159029331|emb|CAO90197.1| |
score: 238 |
e-value: 2e-60 |
Identity: 42.61% |
Span: 1056bp (58.4%) |
Frame: 3 |
| unnamed protein product [Microcystis aeruginosa PCC 7806] |
| Match: gi|218248702|ref|YP_002374073.1| |
score: 236 |
e-value: 9e-60 |
Identity: 43.24% |
Span: 999bp (55.3%) |
Frame: 3 |
| pseudouridine synthase, RluA family [Cyanothece sp. PCC 8801] >gi218169180|gb|ACK67917.1| pseudouridine synthase, Rlu... |
| Match: gi|257061765|ref|YP_003139653.1| |
score: 234 |
e-value: 3e-59 |
Identity: 42.94% |
Span: 999bp (55.3%) |
Frame: 3 |
| pseudouridine synthase, RluA family [Cyanothece sp. PCC 8802] >gi256591931|gb|ACV02818.1| pseudouridine synthase, Rlu... |
| Match: gi|172038568|ref|YP_001805069.1| |
score: 233 |
e-value: 6e-59 |
Identity: 40.53% |
Span: 1014bp (56.1%) |
Frame: 3 |
| pseudouridine synthase [Cyanothece sp. ATCC 51142] >gi171700022|gb|ACB53003.1| probable pseudouridine synthase [Cyano... |
| Match: gi|220908619|ref|YP_002483930.1| |
score: 232 |
e-value: 1e-58 |
Identity: 39.88% |
Span: 1023bp (56.6%) |
Frame: 3 |
| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7425] >gi219865230|gb|ACL45569.1| pseudouridine synthase, Rlu... |
| Match: gi|284050466|ref|ZP_06380676.1| |
score: 229 |
e-value: 1e-57 |
Identity: 39.19% |
Span: 1041bp (57.6%) |
Frame: 3 |
| pseudouridine synthase, RluA family protein [Arthrospira platensis str. Paraca] |
| Match: gi|166364334|ref|YP_001656607.1| |
score: 228 |
e-value: 2e-57 |
Identity: 41.79% |
Span: 1041bp (57.6%) |
Frame: 3 |
| pseudouridine synthase [Microcystis aeruginosa NIES-843] >gi166086707|dbj|BAG01415.1| pseudouridine synthase [Microcy... |
|
| 225 lower scoring hits censored -- only 25 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 4 hits recorded |
| Match: At3G52260.2 |
score: 490 |
e-value: 1e-138 |
Identity: 66.67% |
Span: 1068bp (59.1%) |
Frame: 3 |
| pseudouridine synthase family protein | chr3:19394430-19397418 REVERSE |
| Match: At3G52260.1 |
score: 389 |
e-value: 4e-108 |
Identity: 67.97% |
Span: 840bp (46.5%) |
Frame: 3 |
| pseudouridine synthase family protein | chr3:19394961-19397418 REVERSE |
| Match: At1G76050.2 |
score: 97.4 |
e-value: 2e-20 |
Identity: 25.26% |
Span: 1008bp (55.8%) |
Frame: 3 |
| pseudouridine synthase family protein | chr1:28545752-28547720 FORWARD |
| Match: At5G51140.1 |
score: 79.7 |
e-value: 5e-15 |
Identity: 26.52% |
Span: 798bp (44.1%) |
Frame: 3 |
| pseudouridine synthase family protein | chr5:20801503-20804019 REVERSE |
|
| swissprot [blastx] | Showing best 25 hits recorded |
| Match: Q5M721 |
score: 490 |
e-value: 1e-137 |
Identity: 66.67% |
Span: 1068bp (59.1%) |
Frame: 3 |
| RNA pseudourine synthase 5 OS=Arabidopsis thaliana GN=At3g52260 PE=2 SV=2 |
| Match: Q0DST9 |
score: 451 |
e-value: 1e-125 |
Identity: 62.77% |
Span: 1077bp (59.6%) |
Frame: 3 |
| RNA pseudourine synthase 5 OS=Oryza sativa subsp. japonica GN=Os03g0288500 PE=2 SV=2 |
| Match: P72970 |
score: 197 |
e-value: 2e-49 |
Identity: 38.87% |
Span: 1005bp (55.6%) |
Frame: 3 |
| Uncharacterized RNA pseudouridine synthase slr1592 OS=Synechocystis sp. (strain PCC 6803) GN=slr1592 PE=3 SV=1 |
| Match: P74346 |
score: 119 |
e-value: 9e-26 |
Identity: 31.44% |
Span: 786bp (43.5%) |
Frame: 3 |
| Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis sp. (strain PCC 6803) GN=slr1629 PE=3 SV=1 |
| Match: P33640 |
score: 117 |
e-value: 2e-25 |
Identity: 32.08% |
Span: 927bp (51.3%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas aeruginosa GN=rluD PE=3 SV=2 |
| Match: Q8DEV0 |
score: 114 |
e-value: 2e-24 |
Identity: 29.28% |
Span: 927bp (51.3%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Vibrio vulnificus GN=rluD PE=3 SV=1 |
| Match: P50513 |
score: 113 |
e-value: 4e-24 |
Identity: 29.74% |
Span: 795bp (44.0%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Zymomonas mobilis GN=rluD PE=3 SV=2 |
| Match: Q87S65 |
score: 111 |
e-value: 1e-23 |
Identity: 29.3% |
Span: 927bp (51.3%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Vibrio parahaemolyticus GN=rluD PE=3 SV=1 |
| Match: P54604 |
score: 109 |
e-value: 7e-23 |
Identity: 28.24% |
Span: 786bp (43.5%) |
Frame: 3 |
| Uncharacterized RNA pseudouridine synthase yhcT OS=Bacillus subtilis GN=yhcT PE=3 SV=2 |
| Match: O67638 |
score: 108 |
e-value: 1e-22 |
Identity: 29.93% |
Span: 864bp (47.8%) |
Frame: 3 |
| Uncharacterized RNA pseudouridine synthase aq_1758 OS=Aquifex aeolicus GN=aq_1758 PE=3 SV=1 |
| Match: P44445 |
score: 108 |
e-value: 1e-22 |
Identity: 32.33% |
Span: 783bp (43.3%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Haemophilus influenzae GN=rluD PE=3 SV=1 |
| Match: Q9KU20 |
score: 107 |
e-value: 2e-22 |
Identity: 29.15% |
Span: 927bp (51.3%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Vibrio cholerae GN=rluD PE=3 SV=1 |
| Match: Q9JVB6 |
score: 107 |
e-value: 2e-22 |
Identity: 30.74% |
Span: 792bp (43.8%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Neisseria meningitidis serogroup A GN=rluD PE=3 SV=1 |
| Match: Q9CKA6 |
score: 106 |
e-value: 5e-22 |
Identity: 28.96% |
Span: 954bp (52.8%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Pasteurella multocida GN=rluD PE=3 SV=1 |
| Match: Q9K0B0 |
score: 106 |
e-value: 5e-22 |
Identity: 30.74% |
Span: 792bp (43.8%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Neisseria meningitidis serogroup B GN=rluD PE=3 SV=1 |
| Match: Q8K9E9 |
score: 105 |
e-value: 8e-22 |
Identity: 27.1% |
Span: 1080bp (59.7%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rluD PE=3 SV=1 |
| Match: Q9L7A7 |
score: 105 |
e-value: 1e-21 |
Identity: 28.08% |
Span: 909bp (50.3%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Haemophilus ducreyi GN=rluD PE=3 SV=2 |
| Match: Q45480 |
score: 105 |
e-value: 1e-21 |
Identity: 28.06% |
Span: 912bp (50.4%) |
Frame: 3 |
| Uncharacterized RNA pseudouridine synthase ylyB OS=Bacillus subtilis GN=ylyB PE=3 SV=3 |
| Match: Q82WZ5 |
score: 103 |
e-value: 3e-21 |
Identity: 32.18% |
Span: 783bp (43.3%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Nitrosomonas europaea GN=rluD PE=3 SV=1 |
| Match: Q45826 |
score: 102 |
e-value: 7e-21 |
Identity: 30.97% |
Span: 804bp (44.5%) |
Frame: 3 |
| Uncharacterized RNA pseudouridine synthase Caur_0901 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-... |
| Match: P57481 |
score: 101 |
e-value: 2e-20 |
Identity: 26.79% |
Span: 966bp (53.4%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rluD PE=3 SV=1 |
| Match: Q3ECD0 |
score: 97.4 |
e-value: 3e-19 |
Identity: 25.26% |
Span: 1008bp (55.8%) |
Frame: 3 |
| RNA pseudourine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=At1g76050 PE=2 SV=1 |
| Match: P65835 |
score: 97.1 |
e-value: 4e-19 |
Identity: 28.85% |
Span: 906bp (50.1%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Shigella flexneri GN=rluD PE=3 SV=2 |
| Match: P65834 |
score: 97.1 |
e-value: 4e-19 |
Identity: 28.85% |
Span: 906bp (50.1%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Escherichia coli O6 GN=rluD PE=3 SV=2 |
| Match: P33643 |
score: 96.7 |
e-value: 5e-19 |
Identity: 28.53% |
Span: 906bp (50.1%) |
Frame: 3 |
| Ribosomal large subunit pseudouridine synthase D OS=Escherichia coli (strain K12) GN=rluD PE=1 SV=4 |
|
| 63 lower scoring hits censored -- only 25 best hits are stored. |
