| genbank/nr [blastx] | Showing best 57 hits recorded |
| Match: gi|13278055|gb|AAH03883.1| |
score: 241.5 |
e-value: 1.7e-63 |
Identity: 92.5% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|13278055|gb|AAH03883.1| Similar to RIKEN cDNA 2010107D16 gene [Mus musculus] |
| Match: gi|15723291|gb|AAL06331.1| |
score: 230.3 |
e-value: 4e-60 |
Identity: 86.67% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|15723291|gb|AAL06331.1| U2 auxiliary factor small subunit [Arabidopsis thaliana] |
| Match: gi|15217666|ref|NP_174086.1| |
score: 230.3 |
e-value: 4e-60 |
Identity: 86.67% |
Span: 360bp (85.5%) |
Frame: 3 |
| ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] >gi75336... |
| Match: gi|34910942|ref|NP_916818.1| |
score: 228 |
e-value: 2e-59 |
Identity: 84.17% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|34910942|ref|NP_916818.1| putative U2 snRNP auxiliary factor [Oryza sativa (japonica cultivar-group)] gi|20161586|... |
| Match: gi|15239067|ref|NP_199096.1| |
score: 228 |
e-value: 2e-59 |
Identity: 84.17% |
Span: 360bp (85.5%) |
Frame: 3 |
| U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] >gi4257354... |
| Match: gi|3850816|emb|CAA77132.1| |
score: 224.9 |
e-value: 1.7e-58 |
Identity: 80.83% |
Span: 360bp (85.5%) |
Frame: 3 |
| U2 snRNP auxiliary factor, small subunit [Oryza sativa] |
| Match: gi|15723293|gb|AAL06332.1| |
score: 224.6 |
e-value: 2.2e-58 |
Identity: 83.33% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|15723293|gb|AAL06332.1| U2 auxiliary factor small subunit [Arabidopsis thaliana] |
| Match: gi|3850819|emb|CAA77134.1| |
score: 221.9 |
e-value: 1.4e-57 |
Identity: 82.5% |
Span: 360bp (85.5%) |
Frame: 3 |
| U2 snRNP auxiliary factor, small subunit [Oryza sativa] |
| Match: gi|3850818|emb|CAA77133.1| |
score: 221.9 |
e-value: 1.4e-57 |
Identity: 82.5% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|3850818|emb|CAA77133.1| U2 snRNP auxiliary factor, small subunit [Oryza sativa] |
| Match: gi|4204470|gb|AAD13394.1| |
score: 157.1 |
e-value: 4.3e-38 |
Identity: 59.5% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|4204470|gb|AAD13394.1| splicing factor U2AF35 [Takifugu rubripes] |
| Match: gi|25072205|ref|NP_739566.1| |
score: 156.8 |
e-value: 5.6e-38 |
Identity: 59.5% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|25072205|ref|NP_739566.1| U2 auxiliary factor 26; auxiliary factor 26 [Mus musculus] gi|34855699|ref|XP_341829.1| ... |
| Match: gi|5803207|ref|NP_006749.1| |
score: 153.7 |
e-value: 4.8e-37 |
Identity: 57.02% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|5803207|ref|NP_006749.1| U2 small nuclear RNA auxillary factor 1; U2 snRNP auxiliary factor small subunit; splicin... |
| Match: gi|13235096|emb|CAC33541.1| |
score: 153.7 |
e-value: 4.8e-37 |
Identity: 57.02% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|13235096|emb|CAC33541.1| U2snRNP auxiliary factor small subunit [Gallus gallus] gi|13235098|emb|CAC33542.1| U2snRN... |
| Match: gi|17368837|sp|Q9D883|U2AG_MOUSE |
score: 153.7 |
e-value: 4.8e-37 |
Identity: 57.02% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|17368837|sp|Q9D883|U2AG_MOUSE Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 snRNP a... |
| Match: gi|17530980|ref|NP_077149.1| |
score: 153.7 |
e-value: 4.8e-37 |
Identity: 57.02% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|17530980|ref|NP_077149.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1; U2 small nuclear ribonucle... |
| Match: gi|29126228|ref|NP_803432.1| |
score: 152.1 |
e-value: 1.4e-36 |
Identity: 57.85% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|29126228|ref|NP_803432.1| U2(RNU2) small nuclear RNA auxillary factor 1 [Danio rerio] gi|21105405|gb|AAM34646.1| U... |
| Match: gi|12805423|gb|AAH02184.1| |
score: 151.8 |
e-value: 1.8e-36 |
Identity: 56.67% |
Span: 357bp (84.8%) |
Frame: 3 |
| gi|12805423|gb|AAH02184.1| U2af1 protein [Mus musculus] |
| Match: gi|7512051|pir||JC6125 |
score: 149.1 |
e-value: 1.2e-35 |
Identity: 56.56% |
Span: 357bp (84.8%) |
Frame: 3 |
| gi|7512051|pir||JC6125 U2 small nuclear ribonucleoprotein auxiliary factor small chain - fruit fly (Drosophila melano... |
| Match: gi|31205983|ref|XP_311943.1| |
score: 148.7 |
e-value: 1.5e-35 |
Identity: 56.1% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|31205983|ref|XP_311943.1| ENSANGP00000011066 [Anopheles gambiae] gi|21295970|gb|EAA08115.1| ENSANGP00000011066 [An... |
| Match: gi|17137284|ref|NP_477208.1| |
score: 148.7 |
e-value: 1.5e-35 |
Identity: 56.56% |
Span: 357bp (84.8%) |
Frame: 3 |
| gi|17137284|ref|NP_477208.1| U2 small nuclear riboprotein auxiliary factor 38 CG3582-PA [Drosophila melanogaster] gi|... |
| Match: gi|38099371|gb|EAA46727.1| |
score: 148.3 |
e-value: 2e-35 |
Identity: 58.33% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|38099371|gb|EAA46727.1| hypothetical protein MG09948.4 [Magnaporthe grisea 70-15] |
| Match: gi|19115857|ref|NP_594945.1| |
score: 146.4 |
e-value: 7.6e-35 |
Identity: 55% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|19115857|ref|NP_594945.1| splicing factor u2af 35 kd subunit [Schizosaccharomyces pombe] gi|6136086|sp|Q09176|U2AG... |
| Match: gi|2130488|pir||JC6068 |
score: 146.4 |
e-value: 7.6e-35 |
Identity: 55% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|2130488|pir||JC6068 U2 auxiliary factor small chain - fission yeast (Schizosaccharomyces pombe) |
| Match: gi|23479849|gb|EAA16571.1| |
score: 146 |
e-value: 9.9e-35 |
Identity: 54.47% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|23479849|gb|EAA16571.1| similar to RIKEN cDNA 2010107D16 gene [Plasmodium yoelii yoelii] |
| Match: gi|32420507|ref|XP_330697.1| |
score: 144.1 |
e-value: 3.8e-34 |
Identity: 55% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|32420507|ref|XP_330697.1| hypothetical protein [Neurospora crassa] gi|28926195|gb|EAA35178.1| hypothetical protein... |
| Match: gi|23508391|ref|NP_701060.1| |
score: 143.7 |
e-value: 4.9e-34 |
Identity: 53.66% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|23508391|ref|NP_701060.1| U2 snRNP auxiliary factor, small subunit, putative [Plasmodium falciparum 3D7] gi|234961... |
| Match: gi|17544466|ref|NP_503036.1| |
score: 140.6 |
e-value: 4.2e-33 |
Identity: 53.54% |
Span: 369bp (87.6%) |
Frame: 3 |
| gi|17544466|ref|NP_503036.1| auxiliary factor (30.9 kD) (4S62) [Caenorhabditis elegans] gi|7509376|pir||T31503 hypoth... |
| Match: gi|38084025|ref|XP_128982.2| |
score: 140.6 |
e-value: 4.2e-33 |
Identity: 53.72% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|38084025|ref|XP_128982.2| similar to Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 ... |
| Match: gi|21450691|ref|NP_659424.1| |
score: 113.6 |
e-value: 5.5e-25 |
Identity: 49.59% |
Span: 360bp (85.5%) |
Frame: 3 |
| gi|21450691|ref|NP_659424.1| U2(RNU2) small nuclear RNA auxiliary factor 1-like 3; U2 small nuclear ribonucleoprotein... |
| Match: gi|2833358|sp|Q29350|U2AG_PIG |
score: 102.1 |
e-value: 1.6e-21 |
Identity: 56.1% |
Span: 246bp (58.4%) |
Frame: 3 |
| gi|2833358|sp|Q29350|U2AG_PIG Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 snRNP auxi... |
| Match: gi|15218489|ref|NP_172503.1| |
score: 101.7 |
e-value: 2.2e-21 |
Identity: 43.12% |
Span: 327bp (77.7%) |
Frame: 3 |
| U2 snRNP auxiliary factor-related [Arabidopsis thaliana] >gi229621703|sp|Q9SY74.2|C3H5_ARATH RecName: Full=Zinc finge... |
| Match: gi|4827046|ref|NP_005080.1| |
score: 93.97 |
e-value: 4.5e-19 |
Identity: 42.48% |
Span: 327bp (77.7%) |
Frame: 3 |
| gi|4827046|ref|NP_005080.1| U2 small nuclear ribonucleoprotein auxiliary factor, small subunit-related protein 2; U2A... |
| Match: gi|10835077|ref|NP_005074.1| |
score: 93.97 |
e-value: 4.5e-19 |
Identity: 42.48% |
Span: 327bp (77.7%) |
Frame: 3 |
| gi|10835077|ref|NP_005074.1| U2(RNU2) small nuclear RNA auxiliary factor binding protein-like; U2 small nuclear ribon... |
| Match: gi|1125020|dbj|BAA08532.1| |
score: 93.97 |
e-value: 4.5e-19 |
Identity: 42.48% |
Span: 327bp (77.7%) |
Frame: 3 |
| gi|1125020|dbj|BAA08532.1| U2AF1-RS1 [Homo sapiens] |
| Match: gi|30046580|gb|AAH50451.1| |
score: 93.97 |
e-value: 4.5e-19 |
Identity: 42.48% |
Span: 327bp (77.7%) |
Frame: 3 |
| gi|30046580|gb|AAH50451.1| U2AF1L2 protein [Homo sapiens] |
| Match: gi|6678475|ref|NP_033479.1| |
score: 93.2 |
e-value: 7.6e-19 |
Identity: 42.48% |
Span: 327bp (77.7%) |
Frame: 3 |
| gi|6678475|ref|NP_033479.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1, related sequence 2; U2 smal... |
| Match: gi|32189716|ref|NP_859446.1| |
score: 91.66 |
e-value: 2.2e-18 |
Identity: 38.24% |
Span: 303bp (72.0%) |
Frame: 3 |
| gi|32189716|ref|NP_859446.1| U2AF23/25 spliceosome component, putative [Leishmania major] gi|21629310|gb|AAM68987.1| ... |
| Match: gi|34880076|ref|XP_217612.2| |
score: 91.28 |
e-value: 2.9e-18 |
Identity: 41.59% |
Span: 327bp (77.7%) |
Frame: 3 |
| gi|34880076|ref|XP_217612.2| similar to U2af1-rs2 [Rattus norvegicus] |
| Match: gi|37541308|ref|XP_352050.1| |
score: 87.81 |
e-value: 3.2e-17 |
Identity: 41.67% |
Span: 324bp (77.0%) |
Frame: 3 |
| gi|37541308|ref|XP_352050.1| similar to Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 ... |
| Match: gi|21616732|gb|AAM66350.1| |
score: 85.5 |
e-value: 1.6e-16 |
Identity: 38.24% |
Span: 303bp (72.0%) |
Frame: 3 |
| gi|21616732|gb|AAM66350.1| U2 splicing auxiliary factor; U2AF26 [Trypanosoma cruzi] |
| Match: gi|4741995|gb|AAD28792.1| |
score: 85.5 |
e-value: 1.6e-16 |
Identity: 36.21% |
Span: 336bp (79.8%) |
Frame: 3 |
| gi|4741995|gb|AAD28792.1| U2 small nuclear ribonucleoprotein auxiliary factor subunit-related protein [Takifugu rubri... |
| Match: gi|13235102|emb|CAC33544.1| |
score: 82.03 |
e-value: 1.8e-15 |
Identity: 77.08% |
Span: 144bp (34.2%) |
Frame: 3 |
| gi|13235102|emb|CAC33544.1| U2snRNP auxiliary factor small subunit (truncated) [Gallus gallus] |
| Match: gi|6755917|ref|NP_035793.1| |
score: 81.65 |
e-value: 2.3e-15 |
Identity: 38.05% |
Span: 327bp (77.7%) |
Frame: 3 |
| gi|6755917|ref|NP_035793.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1, related sequence 1; U2 smal... |
| Match: gi|546061|gb|AAB30301.1| |
score: 81.65 |
e-value: 2.3e-15 |
Identity: 38.05% |
Span: 327bp (77.7%) |
Frame: 3 |
| gi|546061|gb|AAB30301.1| human U2af35 homolog [Mus musculus] |
| Match: gi|26326547|dbj|BAC27017.1| |
score: 81.65 |
e-value: 2.3e-15 |
Identity: 38.05% |
Span: 327bp (77.7%) |
Frame: 3 |
| gi|26326547|dbj|BAC27017.1| unnamed protein product [Mus musculus] |
| Match: gi|33086652|gb|AAP92638.1| |
score: 81.26 |
e-value: 3e-15 |
Identity: 43.18% |
Span: 261bp (62.0%) |
Frame: 3 |
| gi|33086652|gb|AAP92638.1| Cb2-806 [Rattus norvegicus] |
| Match: gi|15988329|pdb|1JMT|A |
score: 79.72 |
e-value: 8.7e-15 |
Identity: 43.04% |
Span: 234bp (55.6%) |
Frame: 3 |
| gi|15988329|pdb|1JMT|A Chain A, X-Ray Structure Of A Core U2af65U2AF35 HETERODIMER |
| Match: gi|19173263|ref|NP_597066.1| |
score: 73.17 |
e-value: 8.2e-13 |
Identity: 39.25% |
Span: 318bp (75.5%) |
Frame: 3 |
| gi|19173263|ref|NP_597066.1| U2 snRNP AUXILIARY FACTOR SMALL SUBUNIT (SPLICING FACTOR U2AF) [Encephalitozoon cuniculi... |
| Match: gi|4914334|gb|AAD32882.1| |
score: 73.17 |
e-value: 8.2e-13 |
Identity: 34.62% |
Span: 270bp (64.1%) |
Frame: 3 |
| gi|4914334|gb|AAD32882.1| F14N23.20 [Arabidopsis thaliana] |
| Match: gi|31236194|ref|XP_319372.1| |
score: 70.86 |
e-value: 4.1e-12 |
Identity: 27.59% |
Span: 336bp (79.8%) |
Frame: 3 |
| gi|31236194|ref|XP_319372.1| ENSANGP00000012185 [Anopheles gambiae] gi|21301640|gb|EAA13785.1| ENSANGP00000012185 [An... |
| Match: gi|31455228|gb|AAH05915.1| |
score: 65.85 |
e-value: 1.3e-10 |
Identity: 54.17% |
Span: 141bp (33.5%) |
Frame: 3 |
| gi|31455228|gb|AAH05915.1| U2AF1 protein [Homo sapiens] |
| Match: gi|21483354|gb|AAM52652.1| |
score: 56.22 |
e-value: 1e-07 |
Identity: 23.77% |
Span: 348bp (82.7%) |
Frame: 3 |
| gi|21483354|gb|AAM52652.1| GM14666p [Drosophila melanogaster] |
| Match: gi|20129227|ref|NP_608857.1| |
score: 56.22 |
e-value: 1e-07 |
Identity: 23.77% |
Span: 348bp (82.7%) |
Frame: 3 |
| gi|20129227|ref|NP_608857.1| CG3294-PA [Drosophila melanogaster] gi|10727326|gb|AAF50982.2| CG3294-PA [Drosophila mel... |
| Match: gi|28574034|ref|NP_787976.1| |
score: 56.22 |
e-value: 1e-07 |
Identity: 23.77% |
Span: 348bp (82.7%) |
Frame: 3 |
| gi|28574034|ref|NP_787976.1| CG3294-PB [Drosophila melanogaster] gi|28380246|gb|AAO41150.1| CG3294-PB [Drosophila mel... |
| Match: gi|29250776|gb|EAA42265.1| |
score: 46.21 |
e-value: 0.00011 |
Identity: 25.49% |
Span: 306bp (72.7%) |
Frame: 3 |
| gi|29250776|gb|EAA42265.1| GLP_49_97129_97710 [Giardia lamblia ATCC 50803] |
| Match: gi|23619166|ref|NP_705128.1| |
score: 38.12 |
e-value: 0.029 |
Identity: 31.25% |
Span: 240bp (57.0%) |
Frame: 3 |
| gi|23619166|ref|NP_705128.1| splicing factor, putative [Plasmodium falciparum 3D7] gi|23615373|emb|CAD52364.1| splici... |
| Match: gi|23481068|gb|EAA17458.1| |
score: 37.35 |
e-value: 0.05 |
Identity: 31.25% |
Span: 240bp (57.0%) |
Frame: 3 |
| gi|23481068|gb|EAA17458.1| putative splicing factor [Plasmodium yoelii yoelii] |
|
| arabidopsis/peptide [blastx] | Showing best 4 hits recorded |
| Match: At1g27650.1 |
score: 230.3 |
e-value: 2.5e-61 |
Identity: 86.67% |
Span: 360bp (85.5%) |
Frame: 3 |
| At1g27650.1 68408.m03065 splicing factor U2AF small subunit, putative Strong similarity to gb|Y18349 U2 snRNP auxilia... |
| Match: At5g42820.1 |
score: 228 |
e-value: 1.2e-60 |
Identity: 84.17% |
Span: 360bp (85.5%) |
Frame: 3 |
| At5g42820.1 68412.m04707 splicing factor U2AF small subunit, putative U2 snRNP auxiliary factor, small subunit |
| Match: At1g10320.1 |
score: 101.7 |
e-value: 1.3e-22 |
Identity: 43.12% |
Span: 327bp (77.7%) |
Frame: 3 |
| At1g10320.1 68408.m01049 splicing factor U2AF small subunit-related protein, putative similar to U2 small nuclear rib... |
| Match: At2g16940.1 |
score: 32.73 |
e-value: 0.075 |
Identity: 30.14% |
Span: 186bp (44.2%) |
Frame: 3 |
| At2g16940.1 68409.m01758 RRM-containing protein |
|
