| genbank/nr [blastx] | Showing best 55 hits recorded |
| Match: gi|13278055|gb|AAH03883.1| |
score: 206.1 |
e-value: 1.5e-52 |
Identity: 93.14% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|13278055|gb|AAH03883.1| Similar to RIKEN cDNA 2010107D16 gene [Mus musculus] |
| Match: gi|15723291|gb|AAL06331.1| |
score: 199.1 |
e-value: 1.8e-50 |
Identity: 88.24% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|15723291|gb|AAL06331.1| U2 auxiliary factor small subunit [Arabidopsis thaliana] |
| Match: gi|15217666|ref|NP_174086.1| |
score: 199.1 |
e-value: 1.8e-50 |
Identity: 88.24% |
Span: 306bp (65.0%) |
Frame: 3 |
| ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] >gi75336... |
| Match: gi|15239067|ref|NP_199096.1| |
score: 197.6 |
e-value: 5.2e-50 |
Identity: 86.27% |
Span: 306bp (65.0%) |
Frame: 3 |
| U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] >gi4257354... |
| Match: gi|15723293|gb|AAL06332.1| |
score: 195.3 |
e-value: 2.6e-49 |
Identity: 86.14% |
Span: 303bp (64.3%) |
Frame: 3 |
| gi|15723293|gb|AAL06332.1| U2 auxiliary factor small subunit [Arabidopsis thaliana] |
| Match: gi|3850816|emb|CAA77132.1| |
score: 194.1 |
e-value: 5.8e-49 |
Identity: 81.37% |
Span: 306bp (65.0%) |
Frame: 3 |
| U2 snRNP auxiliary factor, small subunit [Oryza sativa] |
| Match: gi|3850818|emb|CAA77133.1| |
score: 190.7 |
e-value: 6.4e-48 |
Identity: 84.31% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|3850818|emb|CAA77133.1| U2 snRNP auxiliary factor, small subunit [Oryza sativa] |
| Match: gi|3850819|emb|CAA77134.1| |
score: 190.7 |
e-value: 6.4e-48 |
Identity: 84.31% |
Span: 306bp (65.0%) |
Frame: 3 |
| U2 snRNP auxiliary factor, small subunit [Oryza sativa] |
| Match: gi|34910942|ref|NP_916818.1| |
score: 190.3 |
e-value: 8.3e-48 |
Identity: 81.37% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|34910942|ref|NP_916818.1| putative U2 snRNP auxiliary factor [Oryza sativa (japonica cultivar-group)] gi|20161586|... |
| Match: gi|4204470|gb|AAD13394.1| |
score: 130.2 |
e-value: 1e-29 |
Identity: 57.28% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|4204470|gb|AAD13394.1| splicing factor U2AF35 [Takifugu rubripes] |
| Match: gi|17368837|sp|Q9D883|U2AG_MOUSE |
score: 129 |
e-value: 2.3e-29 |
Identity: 56.31% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|17368837|sp|Q9D883|U2AG_MOUSE Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 snRNP a... |
| Match: gi|17530980|ref|NP_077149.1| |
score: 129 |
e-value: 2.3e-29 |
Identity: 56.31% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|17530980|ref|NP_077149.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1; U2 small nuclear ribonucle... |
| Match: gi|13235096|emb|CAC33541.1| |
score: 129 |
e-value: 2.3e-29 |
Identity: 56.31% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|13235096|emb|CAC33541.1| U2snRNP auxiliary factor small subunit [Gallus gallus] gi|13235098|emb|CAC33542.1| U2snRN... |
| Match: gi|5803207|ref|NP_006749.1| |
score: 129 |
e-value: 2.3e-29 |
Identity: 56.31% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|5803207|ref|NP_006749.1| U2 small nuclear RNA auxillary factor 1; U2 snRNP auxiliary factor small subunit; splicin... |
| Match: gi|25072205|ref|NP_739566.1| |
score: 129 |
e-value: 2.3e-29 |
Identity: 57.28% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|25072205|ref|NP_739566.1| U2 auxiliary factor 26; auxiliary factor 26 [Mus musculus] gi|34855699|ref|XP_341829.1| ... |
| Match: gi|7512051|pir||JC6125 |
score: 128.3 |
e-value: 3.9e-29 |
Identity: 58.49% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|7512051|pir||JC6125 U2 small nuclear ribonucleoprotein auxiliary factor small chain - fruit fly (Drosophila melano... |
| Match: gi|12805423|gb|AAH02184.1| |
score: 127.1 |
e-value: 8.6e-29 |
Identity: 55.88% |
Span: 303bp (64.3%) |
Frame: 3 |
| gi|12805423|gb|AAH02184.1| U2af1 protein [Mus musculus] |
| Match: gi|17137284|ref|NP_477208.1| |
score: 127.1 |
e-value: 8.6e-29 |
Identity: 57.14% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|17137284|ref|NP_477208.1| U2 small nuclear riboprotein auxiliary factor 38 CG3582-PA [Drosophila melanogaster] gi|... |
| Match: gi|29126228|ref|NP_803432.1| |
score: 126.7 |
e-value: 1.1e-28 |
Identity: 56.31% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|29126228|ref|NP_803432.1| U2(RNU2) small nuclear RNA auxillary factor 1 [Danio rerio] gi|21105405|gb|AAM34646.1| U... |
| Match: gi|31205983|ref|XP_311943.1| |
score: 126.3 |
e-value: 1.5e-28 |
Identity: 57.14% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|31205983|ref|XP_311943.1| ENSANGP00000011066 [Anopheles gambiae] gi|21295970|gb|EAA08115.1| ENSANGP00000011066 [An... |
| Match: gi|23479849|gb|EAA16571.1| |
score: 123.2 |
e-value: 1.2e-27 |
Identity: 55.24% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|23479849|gb|EAA16571.1| similar to RIKEN cDNA 2010107D16 gene [Plasmodium yoelii yoelii] |
| Match: gi|23508391|ref|NP_701060.1| |
score: 120.9 |
e-value: 6.2e-27 |
Identity: 54.29% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|23508391|ref|NP_701060.1| U2 snRNP auxiliary factor, small subunit, putative [Plasmodium falciparum 3D7] gi|234961... |
| Match: gi|38099371|gb|EAA46727.1| |
score: 120.2 |
e-value: 1.1e-26 |
Identity: 57.84% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|38099371|gb|EAA46727.1| hypothetical protein MG09948.4 [Magnaporthe grisea 70-15] |
| Match: gi|2130488|pir||JC6068 |
score: 119.4 |
e-value: 1.8e-26 |
Identity: 52.94% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|2130488|pir||JC6068 U2 auxiliary factor small chain - fission yeast (Schizosaccharomyces pombe) |
| Match: gi|19115857|ref|NP_594945.1| |
score: 119.4 |
e-value: 1.8e-26 |
Identity: 52.94% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|19115857|ref|NP_594945.1| splicing factor u2af 35 kd subunit [Schizosaccharomyces pombe] gi|6136086|sp|Q09176|U2AG... |
| Match: gi|38084025|ref|XP_128982.2| |
score: 115.9 |
e-value: 2e-25 |
Identity: 52.43% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|38084025|ref|XP_128982.2| similar to Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 ... |
| Match: gi|32420507|ref|XP_330697.1| |
score: 115.2 |
e-value: 3.4e-25 |
Identity: 52.94% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|32420507|ref|XP_330697.1| hypothetical protein [Neurospora crassa] gi|28926195|gb|EAA35178.1| hypothetical protein... |
| Match: gi|17544466|ref|NP_503036.1| |
score: 110.9 |
e-value: 6.4e-24 |
Identity: 50.48% |
Span: 303bp (64.3%) |
Frame: 3 |
| gi|17544466|ref|NP_503036.1| auxiliary factor (30.9 kD) (4S62) [Caenorhabditis elegans] gi|7509376|pir||T31503 hypoth... |
| Match: gi|2833358|sp|Q29350|U2AG_PIG |
score: 102.8 |
e-value: 1.7e-21 |
Identity: 56.1% |
Span: 246bp (52.2%) |
Frame: 3 |
| gi|2833358|sp|Q29350|U2AG_PIG Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 snRNP auxi... |
| Match: gi|21450691|ref|NP_659424.1| |
score: 89.35 |
e-value: 2e-17 |
Identity: 46.6% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|21450691|ref|NP_659424.1| U2(RNU2) small nuclear RNA auxiliary factor 1-like 3; U2 small nuclear ribonucleoprotein... |
| Match: gi|13235102|emb|CAC33544.1| |
score: 86.27 |
e-value: 1.7e-16 |
Identity: 79.17% |
Span: 144bp (30.6%) |
Frame: 3 |
| gi|13235102|emb|CAC33544.1| U2snRNP auxiliary factor small subunit (truncated) [Gallus gallus] |
| Match: gi|37541308|ref|XP_352050.1| |
score: 84.34 |
e-value: 6.4e-16 |
Identity: 42.16% |
Span: 306bp (65.0%) |
Frame: 3 |
| gi|37541308|ref|XP_352050.1| similar to Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 ... |
| Match: gi|15218489|ref|NP_172503.1| |
score: 83.96 |
e-value: 8.4e-16 |
Identity: 46.24% |
Span: 279bp (59.2%) |
Frame: 3 |
| U2 snRNP auxiliary factor-related [Arabidopsis thaliana] >gi229621703|sp|Q9SY74.2|C3H5_ARATH RecName: Full=Zinc finge... |
| Match: gi|10835077|ref|NP_005074.1| |
score: 74.71 |
e-value: 5.1e-13 |
Identity: 43.96% |
Span: 252bp (53.5%) |
Frame: 3 |
| gi|10835077|ref|NP_005074.1| U2(RNU2) small nuclear RNA auxiliary factor binding protein-like; U2 small nuclear ribon... |
| Match: gi|1125020|dbj|BAA08532.1| |
score: 74.71 |
e-value: 5.1e-13 |
Identity: 43.96% |
Span: 252bp (53.5%) |
Frame: 3 |
| gi|1125020|dbj|BAA08532.1| U2AF1-RS1 [Homo sapiens] |
| Match: gi|4827046|ref|NP_005080.1| |
score: 74.71 |
e-value: 5.1e-13 |
Identity: 43.96% |
Span: 252bp (53.5%) |
Frame: 3 |
| gi|4827046|ref|NP_005080.1| U2 small nuclear ribonucleoprotein auxiliary factor, small subunit-related protein 2; U2A... |
| Match: gi|30046580|gb|AAH50451.1| |
score: 74.71 |
e-value: 5.1e-13 |
Identity: 43.96% |
Span: 252bp (53.5%) |
Frame: 3 |
| gi|30046580|gb|AAH50451.1| U2AF1L2 protein [Homo sapiens] |
| Match: gi|4914334|gb|AAD32882.1| |
score: 73.94 |
e-value: 8.7e-13 |
Identity: 38.46% |
Span: 270bp (57.3%) |
Frame: 3 |
| gi|4914334|gb|AAD32882.1| F14N23.20 [Arabidopsis thaliana] |
| Match: gi|6678475|ref|NP_033479.1| |
score: 72.02 |
e-value: 3.3e-12 |
Identity: 42.86% |
Span: 252bp (53.5%) |
Frame: 3 |
| gi|6678475|ref|NP_033479.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1, related sequence 2; U2 smal... |
| Match: gi|34880076|ref|XP_217612.2| |
score: 72.02 |
e-value: 3.3e-12 |
Identity: 42.39% |
Span: 252bp (53.5%) |
Frame: 3 |
| gi|34880076|ref|XP_217612.2| similar to U2af1-rs2 [Rattus norvegicus] |
| Match: gi|32189716|ref|NP_859446.1| |
score: 69.32 |
e-value: 2.1e-11 |
Identity: 36.9% |
Span: 249bp (52.9%) |
Frame: 3 |
| gi|32189716|ref|NP_859446.1| U2AF23/25 spliceosome component, putative [Leishmania major] gi|21629310|gb|AAM68987.1| ... |
| Match: gi|4741995|gb|AAD28792.1| |
score: 68.17 |
e-value: 4.8e-11 |
Identity: 35.79% |
Span: 261bp (55.4%) |
Frame: 3 |
| gi|4741995|gb|AAD28792.1| U2 small nuclear ribonucleoprotein auxiliary factor subunit-related protein [Takifugu rubri... |
| Match: gi|6755917|ref|NP_035793.1| |
score: 60.85 |
e-value: 7.6e-09 |
Identity: 38.46% |
Span: 252bp (53.5%) |
Frame: 3 |
| gi|6755917|ref|NP_035793.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1, related sequence 1; U2 smal... |
| Match: gi|546061|gb|AAB30301.1| |
score: 60.85 |
e-value: 7.6e-09 |
Identity: 38.46% |
Span: 252bp (53.5%) |
Frame: 3 |
| gi|546061|gb|AAB30301.1| human U2af35 homolog [Mus musculus] |
| Match: gi|26326547|dbj|BAC27017.1| |
score: 60.85 |
e-value: 7.6e-09 |
Identity: 38.46% |
Span: 252bp (53.5%) |
Frame: 3 |
| gi|26326547|dbj|BAC27017.1| unnamed protein product [Mus musculus] |
| Match: gi|31236194|ref|XP_319372.1| |
score: 60.46 |
e-value: 9.9e-09 |
Identity: 28.71% |
Span: 291bp (61.8%) |
Frame: 3 |
| gi|31236194|ref|XP_319372.1| ENSANGP00000012185 [Anopheles gambiae] gi|21301640|gb|EAA13785.1| ENSANGP00000012185 [An... |
| Match: gi|21616732|gb|AAM66350.1| |
score: 60.46 |
e-value: 9.9e-09 |
Identity: 34.52% |
Span: 249bp (52.9%) |
Frame: 3 |
| gi|21616732|gb|AAM66350.1| U2 splicing auxiliary factor; U2AF26 [Trypanosoma cruzi] |
| Match: gi|33086652|gb|AAP92638.1| |
score: 52.76 |
e-value: 2.1e-06 |
Identity: 32.1% |
Span: 240bp (51.0%) |
Frame: 3 |
| gi|33086652|gb|AAP92638.1| Cb2-806 [Rattus norvegicus] |
| Match: gi|15988329|pdb|1JMT|A |
score: 51.22 |
e-value: 6e-06 |
Identity: 36.07% |
Span: 180bp (38.2%) |
Frame: 3 |
| gi|15988329|pdb|1JMT|A Chain A, X-Ray Structure Of A Core U2af65U2AF35 HETERODIMER |
| Match: gi|19173263|ref|NP_597066.1| |
score: 49.29 |
e-value: 2.3e-05 |
Identity: 34.48% |
Span: 258bp (54.8%) |
Frame: 3 |
| gi|19173263|ref|NP_597066.1| U2 snRNP AUXILIARY FACTOR SMALL SUBUNIT (SPLICING FACTOR U2AF) [Encephalitozoon cuniculi... |
| Match: gi|2392765|gb|AAB70028.1| |
score: 45.44 |
e-value: 0.00033 |
Identity: 50% |
Span: 126bp (26.8%) |
Frame: -2 |
| gi|2392765|gb|AAB70028.1| hypothetical protein [Arabidopsis thaliana] |
| Match: gi|21483354|gb|AAM52652.1| |
score: 41.97 |
e-value: 0.004 |
Identity: 22.22% |
Span: 276bp (58.6%) |
Frame: 3 |
| gi|21483354|gb|AAM52652.1| GM14666p [Drosophila melanogaster] |
| Match: gi|28574034|ref|NP_787976.1| |
score: 41.97 |
e-value: 0.004 |
Identity: 22.22% |
Span: 276bp (58.6%) |
Frame: 3 |
| gi|28574034|ref|NP_787976.1| CG3294-PB [Drosophila melanogaster] gi|28380246|gb|AAO41150.1| CG3294-PB [Drosophila mel... |
| Match: gi|20129227|ref|NP_608857.1| |
score: 41.97 |
e-value: 0.004 |
Identity: 22.22% |
Span: 276bp (58.6%) |
Frame: 3 |
| gi|20129227|ref|NP_608857.1| CG3294-PA [Drosophila melanogaster] gi|10727326|gb|AAF50982.2| CG3294-PA [Drosophila mel... |
| Match: gi|31455228|gb|AAH05915.1| |
score: 38.51 |
e-value: 0.04 |
Identity: 46.67% |
Span: 87bp (18.5%) |
Frame: 3 |
| gi|31455228|gb|AAH05915.1| U2AF1 protein [Homo sapiens] |
|
| arabidopsis/peptide [blastx] | Showing best 7 hits recorded |
| Match: At1g27650.1 |
score: 199.1 |
e-value: 7.8e-52 |
Identity: 88.24% |
Span: 306bp (65.0%) |
Frame: 3 |
| At1g27650.1 68408.m03065 splicing factor U2AF small subunit, putative Strong similarity to gb|Y18349 U2 snRNP auxilia... |
| Match: At5g42820.1 |
score: 197.6 |
e-value: 2.3e-51 |
Identity: 86.27% |
Span: 306bp (65.0%) |
Frame: 3 |
| At5g42820.1 68412.m04707 splicing factor U2AF small subunit, putative U2 snRNP auxiliary factor, small subunit |
| Match: At1g10320.1 |
score: 83.96 |
e-value: 3.7e-17 |
Identity: 46.24% |
Span: 279bp (59.2%) |
Frame: 3 |
| At1g10320.1 68408.m01049 splicing factor U2AF small subunit-related protein, putative similar to U2 small nuclear rib... |
| Match: At3g48440.1 |
score: 33.11 |
e-value: 0.074 |
Identity: 40% |
Span: 75bp (15.9%) |
Frame: 3 |
| At3g48440.1 68410.m04894 hypothetical protein predicted proteins, Arabidopsis thaliana |
| Match: At3g12680.1 |
score: 33.11 |
e-value: 0.074 |
Identity: 44% |
Span: 75bp (15.9%) |
Frame: 3 |
| At3g12680.1 68410.m01419 expressed protein contains Pfam profile PF00642 zinc finger protein |
| Match: At2g32930.1 |
score: 32.73 |
e-value: 0.097 |
Identity: 37.84% |
Span: 102bp (21.7%) |
Frame: 3 |
| At2g32930.1 68409.m03648 expressed protein |
| Match: At5g63260.1 |
score: 32.73 |
e-value: 0.097 |
Identity: 37.93% |
Span: 87bp (18.5%) |
Frame: 3 |
| At5g63260.1 68412.m07178 expressed protein contains similarity to zinc finger protein |
|
