| arabidopsis/peptide [blastx] | Showing best 63 hits recorded |
| Match: At2G18510.1 |
score: 145 |
e-value: 2e-35 |
Identity: 80.95% |
Span: 252bp (53.1%) |
Frame: 3 |
| Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444); RNA binding | chr2:8038636-8040599 REVERSE |
| Match: At3G14100.1 |
score: 63.9 |
e-value: 2e-10 |
Identity: 30.7% |
Span: 342bp (72.0%) |
Frame: 3 |
| oligouridylate-binding protein, putative | chr3:4673034-4675957 FORWARD |
| Match: At1G49760.1 |
score: 62.4 |
e-value: 5e-10 |
Identity: 36.9% |
Span: 243bp (51.2%) |
Frame: 3 |
| Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor | chr1:18420408-184234... |
| Match: At1G54080.1 |
score: 62.4 |
e-value: 5e-10 |
Identity: 37.97% |
Span: 237bp (49.9%) |
Frame: 3 |
| Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1:20187591-20190492 REVERSE |
| Match: At1G54080.2 |
score: 59.3 |
e-value: 4e-09 |
Identity: 36.59% |
Span: 237bp (49.9%) |
Frame: 3 |
| Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1:20187591-20190492 REVERSE |
| Match: At2G21660.2 |
score: 58.2 |
e-value: 9e-09 |
Identity: 42.47% |
Span: 219bp (46.1%) |
Frame: 3 |
| Symbols: GR-RBP7, CCR2, ATGRP7 | ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding | chr2:9272557-9273... |
| Match: At1G17370.1 |
score: 58.2 |
e-value: 9e-09 |
Identity: 35.44% |
Span: 237bp (49.9%) |
Frame: 3 |
| Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B); mRNA 3'-UTR binding | chr1:5951835-5954818 REVERSE |
| Match: At2G21660.1 |
score: 58.2 |
e-value: 9e-09 |
Identity: 42.47% |
Span: 219bp (46.1%) |
Frame: 3 |
| Symbols: GR-RBP7, CCR2, ATGRP7 | ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded D... |
| Match: At5G61030.1 |
score: 58.2 |
e-value: 9e-09 |
Identity: 37.84% |
Span: 222bp (46.7%) |
Frame: 3 |
| Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding | chr5:24578096-24579378 FORWARD |
| Match: At5G47320.1 |
score: 57 |
e-value: 2e-08 |
Identity: 40.85% |
Span: 213bp (44.8%) |
Frame: 3 |
| Symbols: RPS19 | RPS19 (40S ribosomal protein S19); RNA binding | chr5:19221028-19222178 FORWARD |
| Match: At1G22760.1 |
score: 56.6 |
e-value: 3e-08 |
Identity: 29.35% |
Span: 276bp (58.1%) |
Frame: 3 |
| Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding | chr1:8055588-8058788 FORWARD |
| Match: At1G71770.1 |
score: 55.5 |
e-value: 6e-08 |
Identity: 33.33% |
Span: 225bp (47.4%) |
Frame: 3 |
| Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RNA binding | chr1:26994439-26997109 REVERSE |
| Match: At3G19130.1 |
score: 55.5 |
e-value: 6e-08 |
Identity: 36.49% |
Span: 222bp (46.7%) |
Frame: 3 |
| Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN 47B); RNA binding | chr3:6611404-6613829 REVERSE |
| Match: At4G39260.2 |
score: 54.7 |
e-value: 1e-07 |
Identity: 44.93% |
Span: 207bp (43.6%) |
Frame: 3 |
| Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8);... |
| Match: At4G39260.3 |
score: 54.7 |
e-value: 1e-07 |
Identity: 44.93% |
Span: 207bp (43.6%) |
Frame: 3 |
| Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8);... |
| Match: At4G39260.1 |
score: 54.7 |
e-value: 1e-07 |
Identity: 44.93% |
Span: 207bp (43.6%) |
Frame: 3 |
| Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8);... |
| Match: At4G13850.2 |
score: 54.3 |
e-value: 1e-07 |
Identity: 43.94% |
Span: 198bp (41.7%) |
Frame: 3 |
| Symbols: GR-RBP2, ATGRP2 | ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); RNA binding | chr4:8021310-8022061 FORWARD |
| Match: At4G13850.1 |
score: 54.3 |
e-value: 1e-07 |
Identity: 43.94% |
Span: 198bp (41.7%) |
Frame: 3 |
| Symbols: GR-RBP2, ATGRP2 | ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); RNA binding / double-stranded DNA binding / ... |
| Match: At2G23350.1 |
score: 53.9 |
e-value: 2e-07 |
Identity: 38.16% |
Span: 228bp (48.0%) |
Frame: 3 |
| Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor | chr2:9950289-9953121... |
| Match: At3G23830.2 |
score: 52.4 |
e-value: 5e-07 |
Identity: 35.21% |
Span: 213bp (44.8%) |
Frame: 3 |
| Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding | chr3:8606769-8607684 REVERSE |
| Match: At1G47490.1 |
score: 52.4 |
e-value: 5e-07 |
Identity: 32.05% |
Span: 234bp (49.3%) |
Frame: 3 |
| Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:17427241-17429622 FORWARD |
| Match: At3G23830.1 |
score: 52.4 |
e-value: 5e-07 |
Identity: 35.21% |
Span: 213bp (44.8%) |
Frame: 3 |
| Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA bindin... |
| Match: At1G47490.2 |
score: 52.4 |
e-value: 5e-07 |
Identity: 32.05% |
Span: 234bp (49.3%) |
Frame: 3 |
| Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:17427241-17428554 FORWARD |
| Match: At5G19350.1 |
score: 52 |
e-value: 7e-07 |
Identity: 34.21% |
Span: 228bp (48.0%) |
Frame: 3 |
| RNA-binding protein 45 (RBP45), putative | chr5:6518980-6521297 FORWARD |
| Match: At1G47500.1 |
score: 51.6 |
e-value: 9e-07 |
Identity: 32.89% |
Span: 228bp (48.0%) |
Frame: 3 |
| Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEIN 47C'); RNA binding | chr1:17435122-17437245 FORWARD |
| Match: At3G08000.1 |
score: 51.2 |
e-value: 1e-06 |
Identity: 36.49% |
Span: 222bp (46.7%) |
Frame: 3 |
| RNA-binding protein, putative | chr3:2555040-2555835 REVERSE |
| Match: At1G22760.1 |
score: 50.4 |
e-value: 2e-06 |
Identity: 39.47% |
Span: 228bp (48.0%) |
Frame: 3 |
| Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding | chr1:8055588-8058788 FORWARD |
| Match: At5G04280.1 |
score: 50.1 |
e-value: 3e-06 |
Identity: 36.05% |
Span: 252bp (53.1%) |
Frame: 3 |
| glycine-rich RNA-binding protein | chr5:1192462-1195414 FORWARD |
| Match: At5G64200.1 |
score: 49.3 |
e-value: 4e-06 |
Identity: 41.1% |
Span: 213bp (44.8%) |
Frame: 3 |
| Symbols: ATSC35 | ATSC35 ("Arabidopsis thaliana arginine/serine-rich splicing factor 35, 35 kDa protein"); RNA bindi... |
| Match: At3G26420.1 |
score: 49.3 |
e-value: 4e-06 |
Identity: 40.26% |
Span: 213bp (44.8%) |
Frame: 3 |
| Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleotide binding | chr3:9673190-9674292 FORWARD |
| Match: At4G13860.1 |
score: 49.3 |
e-value: 4e-06 |
Identity: 34.78% |
Span: 207bp (43.6%) |
Frame: 3 |
| glycine-rich RNA-binding protein, putative | chr4:8022597-8023158 FORWARD |
| Match: At5G64200.2 |
score: 49.3 |
e-value: 4e-06 |
Identity: 41.1% |
Span: 213bp (44.8%) |
Frame: 3 |
| Symbols: ATSC35 | ATSC35 ("Arabidopsis thaliana arginine/serine-rich splicing factor 35, 35 kDa protein"); RNA bindi... |
| Match: At1G18630.1 |
score: 49.3 |
e-value: 4e-06 |
Identity: 38.24% |
Span: 204bp (42.9%) |
Frame: 3 |
| Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-binding protein 6); RNA binding | chr1:6415218-6416275 FORWARD |
| Match: At1G74230.1 |
score: 48.9 |
e-value: 6e-06 |
Identity: 38.96% |
Span: 231bp (48.6%) |
Frame: 3 |
| Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding protein 5); RNA binding | chr1:27919007-27920518 FORWARD |
| Match: At4G24770.1 |
score: 48.9 |
e-value: 6e-06 |
Identity: 39.44% |
Span: 213bp (44.8%) |
Frame: 3 |
| Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding | chr4:12766233-12767962 RE... |
| Match: At2G23350.1 |
score: 48.5 |
e-value: 7e-06 |
Identity: 30.49% |
Span: 246bp (51.8%) |
Frame: 3 |
| Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor | chr2:9950289-9953121... |
| Match: At1G49600.1 |
score: 48.5 |
e-value: 7e-06 |
Identity: 31.94% |
Span: 216bp (45.5%) |
Frame: 3 |
| Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA binding | chr1:18360904-18363818 RE... |
| Match: At1G71770.1 |
score: 48.5 |
e-value: 7e-06 |
Identity: 38.16% |
Span: 228bp (48.0%) |
Frame: 3 |
| Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RNA binding | chr1:26994439-26997109 REVERSE |
| Match: At4G27000.1 |
score: 48.5 |
e-value: 7e-06 |
Identity: 33.33% |
Span: 216bp (45.5%) |
Frame: 3 |
| RNA-binding protein 45 (RBP45), putative | chr4:13554989-13557769 REVERSE |
| Match: At1G22760.1 |
score: 48.1 |
e-value: 1e-05 |
Identity: 31.58% |
Span: 228bp (48.0%) |
Frame: 3 |
| Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding | chr1:8055588-8058788 FORWARD |
| Match: At5G06210.1 |
score: 47 |
e-value: 2e-05 |
Identity: 36.84% |
Span: 282bp (59.4%) |
Frame: 3 |
| RNA-binding protein, putative | chr5:1878498-1879516 FORWARD |
| Match: At4G03110.1 |
score: 47 |
e-value: 2e-05 |
Identity: 32.05% |
Span: 234bp (49.3%) |
Frame: 3 |
| RNA-binding protein, putative | chr4:1376612-1379275 REVERSE |
| Match: At1G49760.1 |
score: 46.6 |
e-value: 3e-05 |
Identity: 36% |
Span: 225bp (47.4%) |
Frame: 3 |
| Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor | chr1:18420408-184234... |
| Match: At2G16260.1 |
score: 46.6 |
e-value: 3e-05 |
Identity: 40.32% |
Span: 186bp (39.2%) |
Frame: 3 |
| | Symbol: None | glycine-rich RNA-binding protein, putative, similar to Glycine-rich RNA-binding protein from {Daucus... |
| Match: At2G37220.1 |
score: 46.6 |
e-value: 3e-05 |
Identity: 38.81% |
Span: 201bp (42.3%) |
Frame: 3 |
| 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | chr2:15642059-15643410 REVERSE |
| Match: At1G60650.1 |
score: 46.2 |
e-value: 4e-05 |
Identity: 36.62% |
Span: 213bp (44.8%) |
Frame: 3 |
| glycine-rich RNA-binding protein, putative | chr1:22343754-22345813 FORWARD |
| Match: At5G51300.3 |
score: 46.2 |
e-value: 4e-05 |
Identity: 33.8% |
Span: 213bp (44.8%) |
Frame: 3 |
| nucleic acid binding / nucleotide binding / zinc ion binding | chr5:20867107-20869521 REVERSE |
| Match: At5G51300.1 |
score: 46.2 |
e-value: 4e-05 |
Identity: 33.8% |
Span: 213bp (44.8%) |
Frame: 3 |
| splicing factor-related | chr5:20867107-20869521 REVERSE |
| Match: At5G51300.2 |
score: 46.2 |
e-value: 4e-05 |
Identity: 33.8% |
Span: 213bp (44.8%) |
Frame: 3 |
| splicing factor-related | chr5:20867107-20869521 REVERSE |
| Match: At5G54900.1 |
score: 46.2 |
e-value: 4e-05 |
Identity: 31.51% |
Span: 219bp (46.1%) |
Frame: 3 |
| Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN 45A); RNA binding | chr5:22312638-22315352 FORWARD |
| Match: At1G60650.2 |
score: 46.2 |
e-value: 4e-05 |
Identity: 36.62% |
Span: 213bp (44.8%) |
Frame: 3 |
| glycine-rich RNA-binding protein, putative | chr1:22343754-22345813 FORWARD |
| Match: At5G50250.1 |
score: 46.2 |
e-value: 4e-05 |
Identity: 38.03% |
Span: 213bp (44.8%) |
Frame: 3 |
| 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, p... |
| Match: At4G34110.1 |
score: 45.8 |
e-value: 5e-05 |
Identity: 28.95% |
Span: 228bp (48.0%) |
Frame: 3 |
| Symbols: PAB2 | PAB2 (POLY(A)-BINDING PROTEIN 2); RNA binding | chr4:16337714-16339896 FORWARD |
| Match: At1G01080.2 |
score: 45.8 |
e-value: 5e-05 |
Identity: 30.65% |
Span: 186bp (39.2%) |
Frame: 3 |
| RNA binding | chr1:45503-46789 REVERSE |
| Match: At4G39260.4 |
score: 44.7 |
e-value: 0.0001 |
Identity: 48.98% |
Span: 147bp (30.9%) |
Frame: 3 |
| Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8);... |
| Match: At1G03457.1 |
score: 44.7 |
e-value: 0.0001 |
Identity: 32.93% |
Span: 246bp (51.8%) |
Frame: 3 |
| RNA-binding protein, putative | chr1:861109-864019 REVERSE |
| Match: At1G03457.2 |
score: 44.7 |
e-value: 0.0001 |
Identity: 32.93% |
Span: 246bp (51.8%) |
Frame: 3 |
| RNA-binding protein, putative | chr1:861109-864019 REVERSE |
| Match: At3G53460.2 |
score: 44.3 |
e-value: 0.0001 |
Identity: 33.33% |
Span: 225bp (47.4%) |
Frame: 3 |
| Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucleoprotein); RNA binding | chr3:19830716-19832401 REVERSE |
| Match: At4G24770.1 |
score: 44.3 |
e-value: 0.0001 |
Identity: 35.06% |
Span: 231bp (48.6%) |
Frame: 3 |
| Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding | chr4:12766233-12767962 RE... |
| Match: At5G40490.1 |
score: 44.3 |
e-value: 0.0001 |
Identity: 33.77% |
Span: 231bp (48.6%) |
Frame: 3 |
| RNA recognition motif (RRM)-containing protein | chr5:16242711-16244651 FORWARD |
| Match: At3G53460.1 |
score: 44.3 |
e-value: 0.0001 |
Identity: 33.33% |
Span: 225bp (47.4%) |
Frame: 3 |
| Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucleoprotein); RNA binding | chr3:19830716-19832401 REVERSE |
| Match: At3G16380.1 |
score: 44.3 |
e-value: 0.0001 |
Identity: 36% |
Span: 225bp (47.4%) |
Frame: 3 |
| Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); RNA binding / translation initiation factor | chr3:5558682-5560999... |
| Match: At2G18510.1 |
score: 22.3 |
e-value: 2e-35 |
Identity: 34.29% |
Span: 105bp (22.1%) |
Frame: 2 |
| Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444); RNA binding | chr2:8038636-8040599 REVERSE |
|
| 89 lower scoring hits censored -- only 63 best hits are stored. |
| genbank/nr [blastx] | Showing best 100 hits recorded |
| Match: gi|21593441|gb|AAM65408.1| |
score: 145 |
e-value: 1e-33 |
Identity: 80.95% |
Span: 252bp (53.1%) |
Frame: 3 |
| putative spliceosome associated protein [Arabidopsis thaliana] |
| Match: gi|15224186|ref|NP_179441.1| |
score: 145 |
e-value: 1e-33 |
Identity: 80.95% |
Span: 252bp (53.1%) |
Frame: 3 |
| emb2444 (embryo defective 2444); RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] >gi42... |
| Match: gi|14334958|gb|AAK59656.1| |
score: 145 |
e-value: 1e-33 |
Identity: 80.95% |
Span: 252bp (53.1%) |
Frame: 3 |
| putative spliceosome associated protein [Arabidopsis thaliana] |
| Match: gi|37535012|ref|NP_921808.1| |
score: 144 |
e-value: 6e-36 |
Identity: 78.57% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|37535012|ref|NP_921808.1| putative spliceosomal protein [Oryza sativa (japonica cultivar-group)] gi|31432465|gb|AA... |
| Match: gi|28374170|gb|AAH45264.1| |
score: 140 |
e-value: 8e-32 |
Identity: 75% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|28374170|gb|AAH45264.1| Spx-prov protein [Xenopus laevis] |
| Match: gi|50604232|gb|AAH77458.1| |
score: 140 |
e-value: 8e-32 |
Identity: 75% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|50604232|gb|AAH77458.1| MGC82420 protein [Xenopus laevis] |
| Match: gi|50794775|ref|XP_423721.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|50794775|ref|XP_423721.1| PREDICTED: similar to Splicing factor 3b, subunit 4 [Gallus gallus] |
| Match: gi|76612825|ref|XP_885134.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|76612825|ref|XP_885134.1| PREDICTED: similar to splicing factor 3b, subunit 4 (predicted) isoform 3 [Bos taurus] |
| Match: gi|73981537|ref|XP_540295.2| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|73981537|ref|XP_540295.2| PREDICTED: similar to splicing factor 3b, subunit 4 (predicted) [Canis familiaris] |
| Match: gi|45768679|gb|AAH67655.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|45768679|gb|AAH67655.1| Splicing factor 3b, subunit 4 [Danio rerio] >gi|34193906|gb|AAH56532.1| Splicing factor 3b... |
| Match: gi|76612829|ref|XP_885182.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|76612829|ref|XP_885182.1| PREDICTED: similar to splicing factor 3b, subunit 4 (predicted) isoform 5 [Bos taurus] |
| Match: gi|55960979|emb|CAI12553.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|55960979|emb|CAI12553.1| splicing factor 3b, subunit 4, 49kDa [Homo sapiens] >gi|55960587|emb|CAI12647.1| splicing... |
| Match: gi|76612837|ref|XP_885279.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|76612837|ref|XP_885279.1| PREDICTED: similar to splicing factor 3b, subunit 4 (predicted) isoform 8 [Bos taurus] |
| Match: gi|5032069|ref|NP_005841.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|5032069|ref|NP_005841.1| splicing factor 3b, subunit 4; spliceosome-associated protein (U2 snRNP); spliceosomal pr... |
| Match: gi|94370165|ref|XP_001001248.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|75948207|gb|AAI05267.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|75948207|gb|AAI05267.1| LOC506123 protein [Bos taurus] |
| Match: gi|55588114|ref|XP_513768.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|55588114|ref|XP_513768.1| PREDICTED: hypothetical protein XP_513768 [Pan troglodytes] |
| Match: gi|47229364|emb|CAF99352.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|47229364|emb|CAF99352.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|109015994|ref|XP_001097582.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|52547949|gb|AAM28203.2| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|52547949|gb|AAM28203.2| splicing factor 3b subunit 4 [Danio rerio] |
| Match: gi|76612833|ref|XP_582525.2| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|76612833|ref|XP_582525.2| PREDICTED: similar to splicing factor 3b, subunit 4 (predicted) isoform 2 [Bos taurus] |
| Match: gi|48097884|ref|XP_393914.1| |
score: 139 |
e-value: 2e-31 |
Identity: 58.73% |
Span: 363bp (76.4%) |
Frame: 3 |
| PREDICTED: similar to splicing factor 3b, subunit 4 [Apis mellifera] |
| Match: gi|62898205|dbj|BAD97042.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|62898205|dbj|BAD97042.1| splicing factor 3b, subunit 4 variant [Homo sapiens] |
| Match: gi|38512254|gb|AAH61357.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|38512254|gb|AAH61357.1| Spx-prov protein [Xenopus tropicalis] |
| Match: gi|37537250|gb|AAH24418.3| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| Splicing |
| Match: gi|76612835|ref|XP_885254.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|76612835|ref|XP_885254.1| PREDICTED: similar to splicing factor 3b, subunit 4 (predicted) isoform 7 [Bos taurus] |
| Match: gi|76612831|ref|XP_885204.1| |
score: 139 |
e-value: 2e-31 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|76612831|ref|XP_885204.1| PREDICTED: similar to splicing factor 3b, subunit 4 (predicted) isoform 6 [Bos taurus] |
| Match: gi|108869713|gb|EAT33938.1| |
score: 137 |
e-value: 1e-30 |
Identity: 73.81% |
Span: 252bp (53.1%) |
Frame: 3 |
| spliceosome |
| Match: gi|94399678|ref|XP_998615.1| |
score: 136 |
e-value: 2e-30 |
Identity: 72.62% |
Span: 252bp (53.1%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|91079430|ref|XP_968120.1| |
score: 136 |
e-value: 2e-30 |
Identity: 72.62% |
Span: 252bp (53.1%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|109706833|gb|ABG43003.1| |
score: 133 |
e-value: 1e-29 |
Identity: 71.43% |
Span: 252bp (53.1%) |
Frame: 3 |
| spliceosomal |
| Match: gi|55233804|gb|EAA00839.2| |
score: 133 |
e-value: 2e-29 |
Identity: 72.62% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|55233804|gb|EAA00839.2| ENSANGP00000011587 [Anopheles gambiae str. PEST] >gi|58395925|ref|XP_321584.2| ENSANGP0000... |
| Match: gi|83753631|pdb|1X5T|A |
score: 132 |
e-value: 2e-29 |
Identity: 74.68% |
Span: 237bp (49.9%) |
Frame: 3 |
| Chain |
| Match: gi|4263832|gb|AAD15475.1| |
score: 131 |
e-value: 5e-29 |
Identity: 74.12% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|4263832|gb|AAD15475.1| putative spliceosome associated protein [Arabidopsis thaliana] |
| Match: gi|72010597|ref|XP_784135.1| |
score: 130 |
e-value: 9e-29 |
Identity: 67.86% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|72010597|ref|XP_784135.1| PREDICTED: similar to splicing factor 3b, subunit 4 (predicted) [Strongylocentrotus purp... |
| Match: gi|1002380|gb|AAC47514.1| |
score: 127 |
e-value: 1e-27 |
Identity: 65.56% |
Span: 270bp (56.8%) |
Frame: 3 |
| gi|1002380|gb|AAC47514.1| RRM-type RNA binding protein |
| Match: gi|68051249|gb|AAY84889.1| |
score: 127 |
e-value: 7e-28 |
Identity: 70.24% |
Span: 252bp (53.1%) |
Frame: 3 |
| RE50839p |
| Match: gi|50511896|emb|CAB60993.2| |
score: 127 |
e-value: 1e-27 |
Identity: 65.56% |
Span: 270bp (56.8%) |
Frame: 3 |
| gi|50511896|emb|CAB60993.2| Hypothetical protein C08B11.5 [Caenorhabditis elegans] >gi|55977846|sp|Q09442|YP85_CAEEL ... |
| Match: gi|54643408|gb|EAL32152.1| |
score: 127 |
e-value: 7e-28 |
Identity: 70.24% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|54643408|gb|EAL32152.1| GA17684-PA [Drosophila pseudoobscura] |
| Match: gi|1279382|emb|CAA65831.1| |
score: 127 |
e-value: 7e-28 |
Identity: 70.24% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|1279382|emb|CAA65831.1| spliceosomal protein [Drosophila melanogaster] |
| Match: gi|39587756|emb|CAE67774.1| |
score: 122 |
e-value: 2e-26 |
Identity: 63.33% |
Span: 270bp (56.8%) |
Frame: 3 |
| gi|39587756|emb|CAE67774.1| Hypothetical protein CBG13349 [Caenorhabditis briggsae] |
| Match: gi|68534615|gb|AAH99272.1| |
score: 117 |
e-value: 1e-24 |
Identity: 60% |
Span: 255bp (53.7%) |
Frame: 3 |
| gi|68534615|gb|AAH99272.1| Unknown (protein for MGC:116464) [Xenopus laevis] |
| Match: gi|71021191|ref|XP_760826.1| |
score: 112 |
e-value: 2e-23 |
Identity: 61.18% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|71021191|ref|XP_760826.1| hypothetical protein UM04679.1 [Ustilago maydis 521] >gi|46100200|gb|EAK85433.1| hypothe... |
| Match: gi|66827787|ref|XP_647248.1| |
score: 110 |
e-value: 1e-22 |
Identity: 55.88% |
Span: 306bp (64.4%) |
Frame: 3 |
| gi|66827787|ref|XP_647248.1| hypothetical protein DDB0189486 [Dictyostelium discoideum] >gi|60475375|gb|EAL73310.1| h... |
| Match: gi|76653011|ref|XP_874683.1| |
score: 106 |
e-value: 2e-21 |
Identity: 58.33% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|76653011|ref|XP_874683.1| PREDICTED: similar to splicing factor 3b, subunit 4 (predicted) [Bos taurus] |
| Match: gi|88178443|gb|EAQ85911.1| |
score: 103 |
e-value: 2e-20 |
Identity: 55.56% |
Span: 270bp (56.8%) |
Frame: 3 |
| hypothetical |
| Match: gi|63054583|ref|NP_594001.2| |
score: 102 |
e-value: 4e-20 |
Identity: 55.42% |
Span: 249bp (52.4%) |
Frame: 3 |
| gi|63054583|ref|NP_594001.2| RNA-binding protein [Schizosaccharomyces pombe 972h-] >gi|26399889|sp|O14102|SAP49_SCHPO... |
| Match: gi|73979514|ref|XP_848973.1| |
score: 102 |
e-value: 3e-20 |
Identity: 59.52% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|73979514|ref|XP_848973.1| PREDICTED: similar to splicing factor 3b, subunit 4 (predicted) [Canis familiaris] |
| Match: gi|39943924|ref|XP_361499.1| |
score: 102 |
e-value: 3e-20 |
Identity: 54.44% |
Span: 270bp (56.8%) |
Frame: 3 |
| gi|39943924|ref|XP_361499.1| hypothetical protein MG03973.4 [Magnaporthe grisea 70-15] |
| Match: gi|2388952|emb|CAB11685.1| |
score: 101 |
e-value: 7e-20 |
Identity: 56.79% |
Span: 243bp (51.2%) |
Frame: 3 |
| gi|2388952|emb|CAB11685.1| SPAC31G5.01 [Schizosaccharomyces pombe] >gi|7522539|pir||T38618 probable splicosome associ... |
| Match: gi|57230297|gb|AAW46698.1| |
score: 100 |
e-value: 2e-19 |
Identity: 52.27% |
Span: 264bp (55.6%) |
Frame: 3 |
| gi|57230297|gb|AAW46698.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] >gi|5025623... |
| Match: gi|11595719|emb|CAC18197.1| |
score: 100 |
e-value: 2e-19 |
Identity: 54.44% |
Span: 270bp (56.8%) |
Frame: 3 |
| gi|11595719|emb|CAC18197.1| probable spliceosome-associated protein SAP-49 [Neurospora crassa] >gi|32405818|ref|XP_32... |
| Match: gi|46125929|ref|XP_387518.1| |
score: 96.7 |
e-value: 2e-18 |
Identity: 47.78% |
Span: 270bp (56.8%) |
Frame: 3 |
| gi|46125929|ref|XP_387518.1| hypothetical protein FG07342.1 [Gibberella zeae PH-1] >gi|42553315|gb|EAA76158.1| hypoth... |
| Match: gi|111062319|gb|EAT83439.1| |
score: 96.7 |
e-value: 3e-19 |
Identity: 51.11% |
Span: 270bp (56.8%) |
Frame: 3 |
| hypothetical |
| Match: gi|70984076|ref|XP_747559.1| |
score: 96.3 |
e-value: 2e-18 |
Identity: 46.67% |
Span: 315bp (66.3%) |
Frame: 3 |
| splicing |
| Match: gi|23497260|gb|AAN36806.1| |
score: 95.9 |
e-value: 3e-18 |
Identity: 42.86% |
Span: 315bp (66.3%) |
Frame: 3 |
| spliceosome-associated |
| Match: gi|67540662|ref|XP_664105.1| |
score: 95.1 |
e-value: 5e-18 |
Identity: 50% |
Span: 270bp (56.8%) |
Frame: 3 |
| gi|67540662|ref|XP_664105.1| hypothetical protein AN6501.2 [Aspergillus nidulans FGSC A4] >gi|40738651|gb|EAA57841.1|... |
| Match: gi|90307615|gb|EAS37246.1| |
score: 95.1 |
e-value: 5e-18 |
Identity: 43.1% |
Span: 348bp (73.3%) |
Frame: 3 |
| hypothetical |
| Match: gi|82914993|ref|XP_728927.1| |
score: 89 |
e-value: 4e-16 |
Identity: 45.24% |
Span: 252bp (53.1%) |
Frame: 3 |
| splicing |
| Match: gi|70948340|ref|XP_743694.1| |
score: 88.6 |
e-value: 5e-16 |
Identity: 45.24% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|70948340|ref|XP_743694.1| spliceosome-associated protein, putative [Plasmodium chabaudi] >gi|56523315|emb|CAH77774... |
| Match: gi|68073863|ref|XP_678846.1| |
score: 88.6 |
e-value: 5e-16 |
Identity: 45.24% |
Span: 252bp (53.1%) |
Frame: 3 |
| gi|68073863|ref|XP_678846.1| spliceosome-associated protein, putative [Plasmodium berghei] >gi|56499442|emb|CAH97651.... |
| Match: gi|65302503|emb|CAI74610.1| |
score: 88.6 |
e-value: 5e-16 |
Identity: 50.6% |
Span: 249bp (52.4%) |
Frame: 3 |
| gi|65302503|emb|CAI74610.1| splicing factor 3b subunit 4, putative [Theileria annulata] |
| Match: gi|71030596|ref|XP_764940.1| |
score: 88.2 |
e-value: 6e-16 |
Identity: 50.6% |
Span: 249bp (52.4%) |
Frame: 3 |
| spliceosome |
| Match: gi|89290252|gb|EAR88240.1| |
score: 85.5 |
e-value: 4e-15 |
Identity: 45.24% |
Span: 252bp (53.1%) |
Frame: 3 |
| Splicing |
| Match: gi|50553138|ref|XP_503979.1| |
score: 83.6 |
e-value: 2e-14 |
Identity: 46.74% |
Span: 276bp (58.1%) |
Frame: 3 |
| gi|50553138|ref|XP_503979.1| hypothetical protein [Yarrowia lipolytica] >gi|49649848|emb|CAG79572.1| unnamed protein ... |
| Match: gi|49657057|emb|CAG89795.1| |
score: 83.2 |
e-value: 2e-14 |
Identity: 45.12% |
Span: 243bp (51.2%) |
Frame: 3 |
| gi|49657057|emb|CAG89795.1| unnamed protein product [Debaryomyces hansenii CBS767] >gi|50425585|ref|XP_461388.1| unna... |
| Match: gi|66475928|ref|XP_627780.1| |
score: 79.7 |
e-value: 2e-13 |
Identity: 40.96% |
Span: 249bp (52.4%) |
Frame: 3 |
| gi|66475928|ref|XP_627780.1| U2 snRNP. Hsh49p [Cryptosporidium parvum] >gi|46229319|gb|EAK90168.1| U2 snRNP. Hsh49p, ... |
| Match: gi|32399025|emb|CAD98265.1| |
score: 79.7 |
e-value: 2e-13 |
Identity: 40.96% |
Span: 249bp (52.4%) |
Frame: 3 |
| gi|32399025|emb|CAD98265.1| splicing factor, probable [Cryptosporidium parvum] |
| Match: gi|56755563|gb|AAW25960.1| |
score: 76.6 |
e-value: 2e-12 |
Identity: 75% |
Span: 132bp (27.8%) |
Frame: 3 |
| gi|56755563|gb|AAW25960.1| SJCHGC01449 protein [Schistosoma japonicum] |
| Match: gi|68482438|ref|XP_714851.1| |
score: 72.8 |
e-value: 3e-11 |
Identity: 45.95% |
Span: 222bp (46.7%) |
Frame: 3 |
| gi|68482438|ref|XP_714851.1| putative U2-associated splicing factor [Candida albicans SC5314] >gi|68482559|ref|XP_714... |
| Match: gi|7270986|emb|CAB77630.1| |
score: 70.9 |
e-value: 1e-10 |
Identity: 44.59% |
Span: 222bp (46.7%) |
Frame: 3 |
| gi|7270986|emb|CAB77630.1| spliceosome-associated essential protein [Candida albicans] |
| Match: gi|50547639|ref|XP_501289.1| |
score: 65.5 |
e-value: 4e-09 |
Identity: 46.38% |
Span: 207bp (43.6%) |
Frame: 3 |
| gi|50547639|ref|XP_501289.1| hypothetical protein [Yarrowia lipolytica] >gi|49647156|emb|CAG81584.1| unnamed protein ... |
| Match: gi|2104439|emb|CAB08762.1| |
score: 64.7 |
e-value: 8e-09 |
Identity: 42.25% |
Span: 213bp (44.8%) |
Frame: 3 |
| pab1 |
| Match: gi|173421|gb|AAA35320.1| |
score: 64.7 |
e-value: 8e-09 |
Identity: 42.25% |
Span: 213bp (44.8%) |
Frame: 3 |
| gi|173421|gb|AAA35320.1| poly(A)-binding protein |
| Match: gi|6321013|ref|NP_011092.1| |
score: 63.9 |
e-value: 1e-08 |
Identity: 38.37% |
Span: 255bp (53.7%) |
Frame: 3 |
| gi|6321013|ref|NP_011092.1| Poly(A) binding protein, cytoplasmic and nuclear; Pab1p [Saccharomyces cerevisiae] gi|417... |
| Match: gi|21593280|gb|AAM65229.1| |
score: 63.9 |
e-value: 1e-08 |
Identity: 30.7% |
Span: 342bp (72.0%) |
Frame: 3 |
| oligouridylate binding protein, putative [Arabidopsis thaliana] |
| Match: gi|172092|gb|AAA34838.1| |
score: 63.9 |
e-value: 1e-08 |
Identity: 38.37% |
Span: 255bp (53.7%) |
Frame: 3 |
| gi|172092|gb|AAA34838.1| polyadenylate-binding protein |
| Match: gi|15231783|ref|NP_188026.1| |
score: 63.9 |
e-value: 1e-08 |
Identity: 30.7% |
Span: 342bp (72.0%) |
Frame: 3 |
| oligouridylate-binding protein, putative [Arabidopsis thaliana] >gi9294635|dbj|BAB02974.1| RNA binding protein nucleo... |
| Match: gi|57229093|gb|AAW45527.1| |
score: 63.5 |
e-value: 2e-08 |
Identity: 42.25% |
Span: 213bp (44.8%) |
Frame: 3 |
| gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans var. neoformans JEC21] >g... |
| Match: gi|1229138|gb|AAB07749.1| |
score: 63.2 |
e-value: 2e-08 |
Identity: 46.58% |
Span: 219bp (46.1%) |
Frame: 3 |
| gi|1229138|gb|AAB07749.1| low temperature-responsive RNA-binding protein |
| Match: gi|18402769|ref|NP_564554.1| |
score: 62.4 |
e-value: 4e-08 |
Identity: 36.9% |
Span: 243bp (51.2%) |
Frame: 3 |
| PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor [Arabidopsis thaliana] >gi10120431|gb|A... |
| Match: gi|15221031|ref|NP_175810.1| |
score: 62.4 |
e-value: 4e-08 |
Identity: 37.97% |
Span: 237bp (49.9%) |
Frame: 3 |
| oligouridylate-binding protein, putative [Arabidopsis thaliana] >gi4587549|gb|AAD25780.1|AC006577_16 Similar to gb|U5... |
| Match: gi|92889223|gb|ABE89741.1| |
score: 62 |
e-value: 5e-08 |
Identity: 41.77% |
Span: 237bp (49.9%) |
Frame: 3 |
| RNA-binding |
| Match: gi|71005326|ref|XP_757329.1| |
score: 62 |
e-value: 5e-08 |
Identity: 39.76% |
Span: 249bp (52.4%) |
Frame: 3 |
| hypothetical |
| Match: gi|15822705|gb|AAL07519.1| |
score: 62 |
e-value: 5e-08 |
Identity: 43.84% |
Span: 219bp (46.1%) |
Frame: 3 |
| RNA-binding protein precursor [Solanum tuberosum] |
| Match: gi|49528593|emb|CAG62254.1| |
score: 62 |
e-value: 5e-08 |
Identity: 40.58% |
Span: 207bp (43.6%) |
Frame: 3 |
| unnamed |
| Match: gi|398327|emb|CAA81127.1| |
score: 62 |
e-value: 5e-08 |
Identity: 36% |
Span: 225bp (47.4%) |
Frame: 3 |
| gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis] |
| Match: gi|54637147|gb|EAL26550.1| |
score: 61.6 |
e-value: 6e-08 |
Identity: 39.76% |
Span: 243bp (51.2%) |
Frame: 3 |
| gi|54637147|gb|EAL26550.1| GA18301-PA [Drosophila pseudoobscura] |
| Match: gi|19922904|ref|NP_611924.1| |
score: 61.6 |
e-value: 6e-08 |
Identity: 39.76% |
Span: 243bp (51.2%) |
Frame: 3 |
| gi|19922904|ref|NP_611924.1| CG4612-PA [Drosophila melanogaster] gi|7291799|gb|AAF47219.1| CG4612-PA [Drosophila mela... |
| Match: gi|94468824|gb|ABF18261.1| |
score: 61.2 |
e-value: 8e-08 |
Identity: 37.68% |
Span: 207bp (43.6%) |
Frame: 3 |
| polyadenylate-binding |
| Match: gi|83767904|dbj|BAE58043.1| |
score: 60.8 |
e-value: 1e-07 |
Identity: 37.33% |
Span: 225bp (47.4%) |
Frame: 3 |
| unnamed |
| Match: gi|70990636|ref|XP_750167.1| |
score: 60.8 |
e-value: 1e-07 |
Identity: 37.33% |
Span: 225bp (47.4%) |
Frame: 3 |
| polyadenylate-binding |
| Match: gi|57222972|gb|AAW41016.1| |
score: 60.5 |
e-value: 1e-07 |
Identity: 37.35% |
Span: 249bp (52.4%) |
Frame: 3 |
| gi|57222972|gb|AAW41016.1| single-stranded DNA binding protein, putative [Cryptococcus neoformans var. neoformans JEC... |
| Match: gi|57229093|gb|AAW45527.1| |
score: 52.4 |
e-value: 4e-05 |
Identity: 32.38% |
Span: 291bp (61.3%) |
Frame: 3 |
| gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans var. neoformans JEC21] >g... |
| Match: gi|83767904|dbj|BAE58043.1| |
score: 50.4 |
e-value: 0.0001 |
Identity: 32.5% |
Span: 240bp (50.5%) |
Frame: 3 |
| unnamed |
| Match: gi|37535012|ref|NP_921808.1| |
score: 31.2 |
e-value: 6e-36 |
Identity: 45.71% |
Span: 105bp (22.1%) |
Frame: 2 |
| gi|37535012|ref|NP_921808.1| putative spliceosomal protein [Oryza sativa (japonica cultivar-group)] gi|31432465|gb|AA... |
| Match: gi|111062319|gb|EAT83439.1| |
score: 23.1 |
e-value: 3e-19 |
Identity: 30.56% |
Span: 108bp (22.7%) |
Frame: 1 |
| hypothetical |
| Match: gi|21593441|gb|AAM65408.1| |
score: 22.3 |
e-value: 1e-33 |
Identity: 34.29% |
Span: 105bp (22.1%) |
Frame: 2 |
| putative spliceosome associated protein [Arabidopsis thaliana] |
| Match: gi|14334958|gb|AAK59656.1| |
score: 22.3 |
e-value: 1e-33 |
Identity: 34.29% |
Span: 105bp (22.1%) |
Frame: 2 |
| putative spliceosome associated protein [Arabidopsis thaliana] |
| Match: gi|15224186|ref|NP_179441.1| |
score: 22.3 |
e-value: 1e-33 |
Identity: 34.29% |
Span: 105bp (22.1%) |
Frame: 2 |
| emb2444 (embryo defective 2444); RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] >gi42... |
|
| 336 lower scoring hits censored -- only 100 best hits are stored. |
