| genbank/nr [blastx] | Showing best 100 hits recorded |
| Match: gi|37573054|dbj|BAC98582.1| |
score: 150.2 |
e-value: 1.8e-35 |
Identity: 55.33% |
Span: 447bp (73.3%) |
Frame: 2 |
| putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa Japonica Group] |
| Match: gi|18377662|gb|AAL66981.1| |
score: 136.7 |
e-value: 2.1e-31 |
Identity: 54.36% |
Span: 441bp (72.3%) |
Frame: 2 |
| gi|18377662|gb|AAL66981.1| unknown protein [Arabidopsis thaliana] gi|25055015|gb|AAN71971.1| unknown protein [Arabido... |
| Match: gi|22330340|ref|NP_176226.2| |
score: 124.4 |
e-value: 1.1e-27 |
Identity: 54.35% |
Span: 408bp (66.9%) |
Frame: 2 |
| gi|22330340|ref|NP_176226.2| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] |
| Match: gi|7486937|pir||T02272 |
score: 124.4 |
e-value: 1.1e-27 |
Identity: 54.35% |
Span: 408bp (66.9%) |
Frame: 2 |
| gi|7486937|pir||T02272 hypothetical protein T13D8.9 - Arabidopsis thaliana gi|3249070|gb|AAC24054.1| Contains similar... |
| Match: gi|7508962|pir||T25438 |
score: 76.64 |
e-value: 2.6e-13 |
Identity: 41.76% |
Span: 270bp (44.3%) |
Frame: 2 |
| gi|7508962|pir||T25438 hypothetical protein W04D2.6a - Caenorhabditis elegans |
| Match: gi|32566621|ref|NP_506133.2| |
score: 76.64 |
e-value: 2.6e-13 |
Identity: 41.76% |
Span: 270bp (44.3%) |
Frame: 2 |
| gi|32566621|ref|NP_506133.2| RNA-binding region RNP-1 and Splicing factor PWI family member (82.4 kD) (5M983) [Caen... |
| Match: gi|26374147|dbj|BAB27595.2| |
score: 75.87 |
e-value: 4.4e-13 |
Identity: 45.98% |
Span: 261bp (42.8%) |
Frame: 2 |
| gi|26374147|dbj|BAB27595.2| unnamed protein product [Mus musculus] |
| Match: gi|23956206|ref|NP_081625.1| |
score: 75.87 |
e-value: 4.4e-13 |
Identity: 45.98% |
Span: 261bp (42.8%) |
Frame: 2 |
| gi|23956206|ref|NP_081625.1| RIKEN cDNA 2610015J01 [Mus musculus] gi|14789795|gb|AAH10792.1| RIKEN cDNA 2610015J01 [M... |
| Match: gi|10438851|dbj|BAB15362.1| |
score: 75.87 |
e-value: 4.4e-13 |
Identity: 45.98% |
Span: 261bp (42.8%) |
Frame: 2 |
| gi|10438851|dbj|BAB15362.1| unnamed protein product [Homo sapiens] |
| Match: gi|38382828|gb|AAH62440.1| |
score: 75.87 |
e-value: 4.4e-13 |
Identity: 45.98% |
Span: 261bp (42.8%) |
Frame: 2 |
| gi|38382828|gb|AAH62440.1| Unknown (protein for IMAGE:4248893) [Homo sapiens] |
| Match: gi|37545959|ref|XP_027330.6| |
score: 75.87 |
e-value: 4.4e-13 |
Identity: 45.98% |
Span: 261bp (42.8%) |
Frame: 2 |
| gi|37545959|ref|XP_027330.6| similar to RIKEN cDNA 2610015J01 [Homo sapiens] |
| Match: gi|6624128|gb|AAF19255.1|AC004858_3 |
score: 75.87 |
e-value: 4.4e-13 |
Identity: 45.98% |
Span: 261bp (42.8%) |
Frame: 2 |
| gi|6624128|gb|AAF19255.1|AC004858_3 U1 small ribonucleoprotein 1SNRP homolog; match to PID:g4050087 [Homo sapiens] |
| Match: gi|28175650|gb|AAH45216.1| |
score: 75.87 |
e-value: 4.4e-13 |
Identity: 45.98% |
Span: 261bp (42.8%) |
Frame: 2 |
| gi|28175650|gb|AAH45216.1| Unknown (protein for IMAGE:4930521) [Xenopus laevis] |
| Match: gi|34868598|ref|XP_220157.2| |
score: 75.87 |
e-value: 4.4e-13 |
Identity: 45.98% |
Span: 261bp (42.8%) |
Frame: 2 |
| gi|34868598|ref|XP_220157.2| similar to RIKEN cDNA 2610015J01 [Rattus norvegicus] |
| Match: gi|32399014|emb|CAD98254.1| |
score: 74.33 |
e-value: 1.3e-12 |
Identity: 45.95% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|32399014|emb|CAD98254.1| RNA-binding domain protein [Cryptosporidium parvum] |
| Match: gi|28279215|gb|AAH45992.1| |
score: 70.48 |
e-value: 1.8e-11 |
Identity: 42.53% |
Span: 261bp (42.8%) |
Frame: 2 |
| gi|28279215|gb|AAH45992.1| Similar to RIKEN cDNA 2610015J01 gene [Danio rerio] |
| Match: gi|18857955|ref|NP_572242.1| |
score: 61.23 |
e-value: 1.1e-08 |
Identity: 35.16% |
Span: 273bp (44.8%) |
Frame: 2 |
| gi|18857955|ref|NP_572242.1| CG4119-PA [Drosophila melanogaster] gi|5901860|gb|AAD55438.1| BcDNA.LD23634 [Drosophila ... |
| Match: gi|23479413|gb|EAA16250.1| |
score: 58.92 |
e-value: 5.5e-08 |
Identity: 32% |
Span: 225bp (36.9%) |
Frame: 2 |
| gi|23479413|gb|EAA16250.1| RNA recognition motif, putative [Plasmodium yoelii yoelii] |
| Match: gi|4050087|gb|AAC97961.1| |
score: 57.77 |
e-value: 1.2e-07 |
Identity: 46.77% |
Span: 186bp (30.5%) |
Frame: 2 |
| gi|4050087|gb|AAC97961.1| S164 [Homo sapiens] |
| Match: gi|23612185|ref|NP_703765.1| |
score: 55.84 |
e-value: 4.7e-07 |
Identity: 28.57% |
Span: 252bp (41.3%) |
Frame: 2 |
| gi|23612185|ref|NP_703765.1| hypothetical protein, conserved [Plasmodium falciparum 3D7] gi|23498426|emb|CAD50377.1| ... |
| Match: gi|31209753|ref|XP_313843.1| |
score: 55.07 |
e-value: 8e-07 |
Identity: 34.48% |
Span: 261bp (42.8%) |
Frame: 2 |
| gi|31209753|ref|XP_313843.1| ENSANGP00000011728 [Anopheles gambiae] gi|21297034|gb|EAA09179.1| ENSANGP00000011728 [An... |
| Match: gi|17137710|ref|NP_477453.1| |
score: 55.07 |
e-value: 8e-07 |
Identity: 37.97% |
Span: 237bp (38.9%) |
Frame: 2 |
| gi|17137710|ref|NP_477453.1| Cleavage stimulation factor 64 kilodalton subunit CG7697-PA [Drosophila melanogaster] gi... |
| Match: gi|19114796|ref|NP_593884.1| |
score: 55.07 |
e-value: 8e-07 |
Identity: 35.23% |
Span: 264bp (43.3%) |
Frame: 2 |
| gi|19114796|ref|NP_593884.1| putative cleavage or polyadenylation factor [Schizosaccharomyces pombe] gi|7708595|emb|C... |
| Match: gi|28557621|gb|AAO45216.1| |
score: 55.07 |
e-value: 8e-07 |
Identity: 37.97% |
Span: 237bp (38.9%) |
Frame: 2 |
| gi|28557621|gb|AAO45216.1| RE27227p [Drosophila melanogaster] |
| Match: gi|19113461|ref|NP_596669.1| |
score: 51.99 |
e-value: 6.7e-06 |
Identity: 35.71% |
Span: 210bp (34.4%) |
Frame: 2 |
| gi|19113461|ref|NP_596669.1| putative polyadenylation factor [Schizosaccharomyces pombe] gi|15213955|sp|O43040|CTF1_S... |
| Match: gi|31201653|ref|XP_309774.1| |
score: 51.99 |
e-value: 6.7e-06 |
Identity: 35.37% |
Span: 246bp (40.3%) |
Frame: 2 |
| gi|31201653|ref|XP_309774.1| ENSANGP00000012477 [Anopheles gambiae] gi|21293399|gb|EAA05544.1| ENSANGP00000012477 [An... |
| Match: gi|21619877|gb|AAH33135.1| |
score: 50.83 |
e-value: 1.5e-05 |
Identity: 35.14% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|21619877|gb|AAH33135.1| Similar to cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kD [Homo sapiens] |
| Match: gi|27807239|ref|NP_777110.1| |
score: 50.83 |
e-value: 1.5e-05 |
Identity: 35.14% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|27807239|ref|NP_777110.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Bos taurus] gi|24416593|gb|AA... |
| Match: gi|26328597|dbj|BAC28037.1| |
score: 50.83 |
e-value: 1.5e-05 |
Identity: 35.14% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|26328597|dbj|BAC28037.1| unnamed protein product [Mus musculus] |
| Match: gi|18875338|ref|NP_573459.1| |
score: 50.83 |
e-value: 1.5e-05 |
Identity: 35.14% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|18875338|ref|NP_573459.1| cleavage stimulation factor, 3' pre-RNA subunit 2; cleavage stimulation factor, 3' pre-R... |
| Match: gi|34810648|pdb|1P1T|A |
score: 50.83 |
e-value: 1.5e-05 |
Identity: 35.14% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|34810648|pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage Stimulation Factor 64 Kda Subunit |
| Match: gi|632500|gb|AAB50269.1| |
score: 50.83 |
e-value: 1.5e-05 |
Identity: 35.14% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|632500|gb|AAB50269.1| polyadenylation factor 64 kDa subunit |
| Match: gi|4557493|ref|NP_001316.1| |
score: 50.83 |
e-value: 1.5e-05 |
Identity: 35.14% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|4557493|ref|NP_001316.1| cleavage stimulation factor subunit 2 [Homo sapiens] gi|461847|sp|P33240|CST2_HUMAN Cleav... |
| Match: gi|22478042|gb|AAH36719.1| |
score: 50.83 |
e-value: 1.5e-05 |
Identity: 35.14% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|22478042|gb|AAH36719.1| Unknown (protein for MGC:36412) [Mus musculus] |
| Match: gi|27735464|gb|AAH41291.1| |
score: 50.83 |
e-value: 1.5e-05 |
Identity: 35.14% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|27735464|gb|AAH41291.1| Cstf-64-prov protein [Xenopus laevis] |
| Match: gi|19114913|ref|NP_594001.1| |
score: 50.06 |
e-value: 2.6e-05 |
Identity: 29.67% |
Span: 273bp (44.8%) |
Frame: 2 |
| gi|19114913|ref|NP_594001.1| spliceosome associated protein 49; RNA binding [Schizosaccharomyces pombe] gi|12038984|e... |
| Match: gi|26399889|sp|O14102|SP49_SCHPO |
score: 50.06 |
e-value: 2.6e-05 |
Identity: 29.67% |
Span: 273bp (44.8%) |
Frame: 2 |
| gi|26399889|sp|O14102|SP49_SCHPO Spliceosome-associated protein 49 |
| Match: gi|32399025|emb|CAD98265.1| |
score: 49.29 |
e-value: 4.4e-05 |
Identity: 32.35% |
Span: 204bp (33.4%) |
Frame: 2 |
| gi|32399025|emb|CAD98265.1| splicing factor, probable [Cryptosporidium parvum] |
| Match: gi|22330574|ref|NP_177325.2| |
score: 49.29 |
e-value: 4.4e-05 |
Identity: 35.62% |
Span: 219bp (35.9%) |
Frame: 2 |
| cleavage stimulation factor, putative [Arabidopsis thaliana] >gi7239507|gb|AAF43233.1|AC012654_17 Contains similarity... |
| Match: gi|21591633|gb|AAM64164.1| |
score: 49.29 |
e-value: 4.4e-05 |
Identity: 35.62% |
Span: 219bp (35.9%) |
Frame: 2 |
| gi|21591633|gb|AAM64164.1| cleavage stimulation factor 64 [Arabidopsis thaliana] |
| Match: gi|32405818|ref|XP_323522.1| |
score: 48.91 |
e-value: 5.7e-05 |
Identity: 31.4% |
Span: 258bp (42.3%) |
Frame: 2 |
| gi|32405818|ref|XP_323522.1| hypothetical protein [Neurospora crassa] gi|11595719|emb|CAC18197.1| probable spliceosom... |
| Match: gi|27817320|emb|CAD61099.1| |
score: 48.52 |
e-value: 7.5e-05 |
Identity: 28.75% |
Span: 240bp (39.3%) |
Frame: 2 |
| gi|27817320|emb|CAD61099.1| SI:zC12P8.2.1 (novel protein similar to human fuse-binding protein-interacting repressor ... |
| Match: gi|27817319|emb|CAD61098.1| |
score: 48.52 |
e-value: 7.5e-05 |
Identity: 28.75% |
Span: 240bp (39.3%) |
Frame: 2 |
| gi|27817319|emb|CAD61098.1| SI:zC12P8.2.2 (novel protein similar to human fuse-binding protein-interacting repressor ... |
| Match: gi|19112042|ref|NP_595250.1| |
score: 48.52 |
e-value: 7.5e-05 |
Identity: 36.76% |
Span: 204bp (33.4%) |
Frame: 2 |
| gi|19112042|ref|NP_595250.1| hypothetical protein; with RNA recognition motif and PWI domain [Schizosaccharomyces pom... |
| Match: gi|34866841|ref|XP_343269.1| |
score: 48.14 |
e-value: 9.7e-05 |
Identity: 31.43% |
Span: 210bp (34.4%) |
Frame: 2 |
| gi|34866841|ref|XP_343269.1| siah binding protein 1; FBP interacting repressor; pyrimidine tract binding splicing fac... |
| Match: gi|16307289|gb|AAH09734.1| |
score: 48.14 |
e-value: 9.7e-05 |
Identity: 31.43% |
Span: 210bp (34.4%) |
Frame: 2 |
| gi|16307289|gb|AAH09734.1| SIAHBP1 protein [Homo sapiens] |
| Match: gi|19526862|ref|NP_598452.1| |
score: 48.14 |
e-value: 9.7e-05 |
Identity: 31.43% |
Span: 210bp (34.4%) |
Frame: 2 |
| gi|19526862|ref|NP_598452.1| RIKEN cDNA 2410104I19 [Mus musculus] gi|14714891|gb|AAH10601.1| RIKEN cDNA 2410104I19 [M... |
| Match: gi|1809248|gb|AAB41656.1| |
score: 48.14 |
e-value: 9.7e-05 |
Identity: 31.43% |
Span: 210bp (34.4%) |
Frame: 2 |
| gi|1809248|gb|AAB41656.1| siah binding protein 1 [Homo sapiens] |
| Match: gi|19173364|ref|NP_597167.1| |
score: 48.14 |
e-value: 9.7e-05 |
Identity: 34.62% |
Span: 234bp (38.4%) |
Frame: 2 |
| gi|19173364|ref|NP_597167.1| CLEAVAGE STIMULATION FACTOR [Encephalitozoon cuniculi] gi|19170953|emb|CAD26343.1| CLEAV... |
| Match: gi|15030041|gb|AAH11265.1| |
score: 48.14 |
e-value: 9.7e-05 |
Identity: 31.43% |
Span: 210bp (34.4%) |
Frame: 2 |
| gi|15030041|gb|AAH11265.1| SIAHBP1 protein [Homo sapiens] gi|15080471|gb|AAH11979.1| SIAHBP1 protein [Homo sapiens] |
| Match: gi|5524727|gb|AAD44358.1| |
score: 48.14 |
e-value: 9.7e-05 |
Identity: 31.43% |
Span: 210bp (34.4%) |
Frame: 2 |
| gi|5524727|gb|AAD44358.1| RNA-binding protein SiahBP [Rattus norvegicus] |
| Match: gi|17298690|ref|NP_055096.2| |
score: 48.14 |
e-value: 9.7e-05 |
Identity: 31.43% |
Span: 210bp (34.4%) |
Frame: 2 |
| gi|17298690|ref|NP_055096.2| fuse-binding protein-interacting repressor isoform b; siah binding protein 1; pyrimidine... |
| Match: gi|6176532|gb|AAF05605.1| |
score: 48.14 |
e-value: 9.7e-05 |
Identity: 31.43% |
Span: 210bp (34.4%) |
Frame: 2 |
| gi|6176532|gb|AAF05605.1| poly-U binding splicing factor PUF60 [Homo sapiens] |
| Match: gi|17978512|ref|NP_510965.1| |
score: 48.14 |
e-value: 9.7e-05 |
Identity: 31.43% |
Span: 210bp (34.4%) |
Frame: 2 |
| gi|17978512|ref|NP_510965.1| fuse-binding protein-interacting repressor isoform a; siah binding protein 1; pyrimidine... |
| Match: gi|172092|gb|AAA34838.1| |
score: 47.75 |
e-value: 0.00013 |
Identity: 32.5% |
Span: 240bp (39.3%) |
Frame: 2 |
| gi|172092|gb|AAA34838.1| polyadenylate-binding protein |
| Match: gi|14149675|ref|NP_056050.1| |
score: 47.75 |
e-value: 0.00013 |
Identity: 33.78% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|14149675|ref|NP_056050.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant [Homo sapiens] gi... |
| Match: gi|34862808|ref|XP_219809.2| |
score: 47.75 |
e-value: 0.00013 |
Identity: 33.78% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|34862808|ref|XP_219809.2| similar to Cstf2t-pending protein [Rattus norvegicus] |
| Match: gi|20072518|gb|AAH26995.1| |
score: 47.75 |
e-value: 0.00013 |
Identity: 33.78% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|20072518|gb|AAH26995.1| Cstf2t-pending protein [Mus musculus] |
| Match: gi|20380061|gb|AAH28239.1| |
score: 47.75 |
e-value: 0.00013 |
Identity: 33.78% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|20380061|gb|AAH28239.1| Cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant [Homo sapiens] |
| Match: gi|26330250|dbj|BAC28855.1| |
score: 47.75 |
e-value: 0.00013 |
Identity: 33.78% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|26330250|dbj|BAC28855.1| unnamed protein product [Mus musculus] gi|26350087|dbj|BAC38683.1| unnamed protein produc... |
| Match: gi|26341156|dbj|BAC34240.1| |
score: 47.75 |
e-value: 0.00013 |
Identity: 33.78% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|26341156|dbj|BAC34240.1| unnamed protein product [Mus musculus] |
| Match: gi|26351239|dbj|BAC39256.1| |
score: 47.75 |
e-value: 0.00013 |
Identity: 33.78% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|26351239|dbj|BAC39256.1| unnamed protein product [Mus musculus] |
| Match: gi|13752575|ref|NP_112539.1| |
score: 47.75 |
e-value: 0.00013 |
Identity: 33.78% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|13752575|ref|NP_112539.1| cleavage stimulation factor, 3' pre-RNA subunit 2, tau; cleavage stimulation factor, 3' ... |
| Match: gi|6321013|ref|NP_011092.1| |
score: 47.75 |
e-value: 0.00013 |
Identity: 32.5% |
Span: 240bp (39.3%) |
Frame: 2 |
| gi|6321013|ref|NP_011092.1| Poly(A) binding protein, cytoplasmic and nuclear; Pab1p [Saccharomyces cerevisiae] gi|417... |
| Match: gi|31209465|ref|XP_313699.1| |
score: 47.37 |
e-value: 0.00017 |
Identity: 34.18% |
Span: 237bp (38.9%) |
Frame: 2 |
| gi|31209465|ref|XP_313699.1| ENSANGP00000003770 [Anopheles gambiae] gi|21296984|gb|EAA09129.1| ENSANGP00000003770 [An... |
| Match: gi|7578881|gb|AAF64167.1| |
score: 46.98 |
e-value: 0.00022 |
Identity: 32.88% |
Span: 219bp (35.9%) |
Frame: 2 |
| gi|7578881|gb|AAF64167.1| plastid-specific ribosomal protein 2 precursor [Spinacia oleracea] |
| Match: gi|31209491|ref|XP_313712.1| |
score: 46.98 |
e-value: 0.00022 |
Identity: 35.53% |
Span: 228bp (37.4%) |
Frame: 2 |
| gi|31209491|ref|XP_313712.1| ENSANGP00000017004 [Anopheles gambiae] gi|21297159|gb|EAA09304.1| ENSANGP00000017004 [An... |
| Match: gi|6321394|ref|NP_011471.1| |
score: 45.82 |
e-value: 0.00048 |
Identity: 37.68% |
Span: 207bp (33.9%) |
Frame: 2 |
| gi|6321394|ref|NP_011471.1| Protein with a role in mRNA stability and/or poly(A) tail length; Rna15p [Saccharomyces c... |
| Match: gi|30689357|ref|NP_850395.1| |
score: 45.82 |
e-value: 0.00048 |
Identity: 25% |
Span: 240bp (39.3%) |
Frame: 2 |
| U1 small nuclear ribonucleoprotein 70 kDa, putative [Arabidopsis thaliana] >gi18252907|gb|AAL62380.1| putative U1 sma... |
| Match: gi|38103529|gb|EAA50214.1| |
score: 45.82 |
e-value: 0.00048 |
Identity: 29.07% |
Span: 258bp (42.3%) |
Frame: 2 |
| gi|38103529|gb|EAA50214.1| hypothetical protein MG03973.4 [Magnaporthe grisea 70-15] |
| Match: gi|25408861|pir||C84865 |
score: 45.82 |
e-value: 0.00048 |
Identity: 25% |
Span: 240bp (39.3%) |
Frame: 2 |
| gi|25408861|pir||C84865 hypothetical protein At2g43370 [imported] - Arabidopsis thaliana gi|2289001|gb|AAB64330.1| pu... |
| Match: gi|30693595|ref|NP_566958.3| |
score: 45.82 |
e-value: 0.00048 |
Identity: 35.62% |
Span: 219bp (35.9%) |
Frame: 2 |
| gi|30693595|ref|NP_566958.3| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gi|17979394|gb|AAL... |
| Match: gi|19114443|ref|NP_593531.1| |
score: 45.44 |
e-value: 0.00063 |
Identity: 29.85% |
Span: 201bp (33.0%) |
Frame: 2 |
| gi|19114443|ref|NP_593531.1| gar2 protein [Schizosaccharomyces pombe] gi|6226864|sp|P41891|GAR2_SCHPO Protein gar2 gi... |
| Match: gi|7446344|pir||JC5437 |
score: 45.44 |
e-value: 0.00063 |
Identity: 29.73% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|7446344|pir||JC5437 spliceosome-associated protein 49 - Caenorhabditis elegans |
| Match: gi|2130461|pir||S55785 |
score: 45.44 |
e-value: 0.00063 |
Identity: 29.85% |
Span: 201bp (33.0%) |
Frame: 2 |
| gi|2130461|pir||S55785 nucleolar protein gar2 - fission yeast (Schizosaccharomyces pombe) gi|663262|emb|CAA88179.1| g... |
| Match: gi|6434257|emb|CAB60993.1| |
score: 45.44 |
e-value: 0.00063 |
Identity: 29.73% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|6434257|emb|CAB60993.1| C. elegans SAP-49 protein (corresponding sequence C08B11.5) [Caenorhabditis elegans] |
| Match: gi|1176668|sp|Q09442|YP85_CAEEL |
score: 45.44 |
e-value: 0.00063 |
Identity: 29.73% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|1176668|sp|Q09442|YP85_CAEEL Hypothetical RNA-binding protein C08B11.5 in chromosome II gi|7495645|pir||T19069 hyp... |
| Match: gi|1002380|gb|AAC47514.1| |
score: 45.44 |
e-value: 0.00063 |
Identity: 29.73% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|1002380|gb|AAC47514.1| RRM-type RNA binding protein |
| Match: gi|1813684|gb|AAC47624.1| |
score: 45.05 |
e-value: 0.00082 |
Identity: 31.08% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|1813684|gb|AAC47624.1| putative RNA binding protein [Brugia malayi] |
| Match: gi|34858075|ref|XP_238245.2| |
score: 44.67 |
e-value: 0.001 |
Identity: 29.73% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|34858075|ref|XP_238245.2| similar to Sf3b4 protein [Rattus norvegicus] |
| Match: gi|23509415|ref|NP_702082.1| |
score: 44.67 |
e-value: 0.001 |
Identity: 28.92% |
Span: 249bp (40.8%) |
Frame: 2 |
| gi|23509415|ref|NP_702082.1| spliceosome-associated protein, putative [Plasmodium falciparum 3D7] gi|23497260|gb|AAN3... |
| Match: gi|37535012|ref|NP_921808.1| |
score: 44.67 |
e-value: 0.001 |
Identity: 30.86% |
Span: 243bp (39.8%) |
Frame: 2 |
| gi|37535012|ref|NP_921808.1| putative spliceosomal protein [Oryza sativa (japonica cultivar-group)] gi|31432465|gb|AA... |
| Match: gi|32476441|ref|NP_869435.1| |
score: 44.67 |
e-value: 0.001 |
Identity: 33.33% |
Span: 225bp (36.9%) |
Frame: 2 |
| gi|32476441|ref|NP_869435.1| RNA-binding protein [Pirellula sp.] gi|32446986|emb|CAD78892.1| RNA-binding protein [Pir... |
| Match: gi|11357772|pir||T49094 |
score: 44.67 |
e-value: 0.001 |
Identity: 36.11% |
Span: 216bp (35.4%) |
Frame: 2 |
| gi|11357772|pir||T49094 hypothetical protein F4F15.260 - Arabidopsis thaliana gi|4678944|emb|CAB41335.1| putative pro... |
| Match: gi|28374170|gb|AAH45264.1| |
score: 44.67 |
e-value: 0.001 |
Identity: 29.73% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|28374170|gb|AAH45264.1| Spx-prov protein [Xenopus laevis] |
| Match: gi|17553656|ref|NP_499734.1| |
score: 44.67 |
e-value: 0.001 |
Identity: 31.65% |
Span: 237bp (38.9%) |
Frame: 2 |
| gi|17553656|ref|NP_499734.1| cleavage and Polyadenylation Factor (cpf-2) [Caenorhabditis elegans] gi|7504374|pir||T22... |
| Match: gi|23346437|ref|NP_694693.1| |
score: 44.67 |
e-value: 0.001 |
Identity: 29.73% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|23346437|ref|NP_694693.1| splicing factor 3b, subunit 4; splicing factor 3b, subunit 4, 49kD; spliceosome associat... |
| Match: gi|5032069|ref|NP_005841.1| |
score: 44.67 |
e-value: 0.001 |
Identity: 29.73% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|5032069|ref|NP_005841.1| splicing factor 3b, subunit 4; spliceosome-associated protein (U2 snRNP); spliceosomal pr... |
| Match: gi|34193906|gb|AAH56532.1| |
score: 44.67 |
e-value: 0.001 |
Identity: 29.73% |
Span: 222bp (36.4%) |
Frame: 2 |
| gi|34193906|gb|AAH56532.1| Splicing factor 3b, subunit 4 [Danio rerio] |
| Match: gi|38107608|gb|EAA53755.1| |
score: 43.9 |
e-value: 0.002 |
Identity: 33.33% |
Span: 216bp (35.4%) |
Frame: 2 |
| gi|38107608|gb|EAA53755.1| hypothetical protein MG09505.4 [Magnaporthe grisea 70-15] |
| Match: gi|25141353|ref|NP_740829.1| |
score: 43.9 |
e-value: 0.002 |
Identity: 31.51% |
Span: 219bp (35.9%) |
Frame: 2 |
| gi|25141353|ref|NP_740829.1| poly U binding factor 68kD like (rnp-6) [Caenorhabditis elegans] gi|21913074|gb|AAM81102... |
| Match: gi|17510025|ref|NP_491176.1| |
score: 43.9 |
e-value: 0.002 |
Identity: 31.51% |
Span: 219bp (35.9%) |
Frame: 2 |
| gi|17510025|ref|NP_491176.1| poly U binding factor 68kD like (rnp-6) [Caenorhabditis elegans] gi|7331978|gb|AAF60666.... |
| Match: gi|17510027|ref|NP_491177.1| |
score: 43.9 |
e-value: 0.002 |
Identity: 31.51% |
Span: 219bp (35.9%) |
Frame: 2 |
| gi|17510027|ref|NP_491177.1| poly U binding factor 68kD like (rnp-6) [Caenorhabditis elegans] gi|7331988|gb|AAF60676.... |
| Match: gi|31211119|ref|XP_314526.1| |
score: 43.51 |
e-value: 0.002 |
Identity: 30.95% |
Span: 237bp (38.9%) |
Frame: 2 |
| gi|31211119|ref|XP_314526.1| ENSANGP00000016235 [Anopheles gambiae] gi|30176487|gb|EAA09944.2| ENSANGP00000016235 [An... |
| Match: gi|30693595|ref|NP_566958.3| |
score: 43.51 |
e-value: 0.002 |
Identity: 28.95% |
Span: 228bp (37.4%) |
Frame: 2 |
| gi|30693595|ref|NP_566958.3| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gi|17979394|gb|AAL... |
| Match: gi|23485610|gb|EAA20492.1| |
score: 43.51 |
e-value: 0.002 |
Identity: 28.92% |
Span: 249bp (40.8%) |
Frame: 2 |
| gi|23485610|gb|EAA20492.1| splicing factor 3b subunit 4 [Plasmodium yoelii yoelii] |
| Match: gi|6321013|ref|NP_011092.1| |
score: 40.43 |
e-value: 0.02 |
Identity: 28.95% |
Span: 228bp (37.4%) |
Frame: 2 |
| gi|6321013|ref|NP_011092.1| Poly(A) binding protein, cytoplasmic and nuclear; Pab1p [Saccharomyces cerevisiae] gi|417... |
| Match: gi|172092|gb|AAA34838.1| |
score: 40.43 |
e-value: 0.02 |
Identity: 28.95% |
Span: 228bp (37.4%) |
Frame: 2 |
| gi|172092|gb|AAA34838.1| polyadenylate-binding protein |
| Match: gi|19114443|ref|NP_593531.1| |
score: 38.89 |
e-value: 0.059 |
Identity: 23.81% |
Span: 252bp (41.3%) |
Frame: 2 |
| gi|19114443|ref|NP_593531.1| gar2 protein [Schizosaccharomyces pombe] gi|6226864|sp|P41891|GAR2_SCHPO Protein gar2 gi... |
| Match: gi|2130461|pir||S55785 |
score: 38.51 |
e-value: 0.077 |
Identity: 24.1% |
Span: 249bp (40.8%) |
Frame: 2 |
| gi|2130461|pir||S55785 nucleolar protein gar2 - fission yeast (Schizosaccharomyces pombe) gi|663262|emb|CAA88179.1| g... |
|
| 127 lower scoring hits censored -- only 100 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 45 hits recorded |
| Match: At1g60200.1 |
score: 124.4 |
e-value: 4e-29 |
Identity: 54.35% |
Span: 408bp (66.9%) |
Frame: 2 |
| At1g60200.1 68408.m06217 RRM-containing protein |
| Match: At1g71800.1 |
score: 49.29 |
e-value: 1.6e-06 |
Identity: 35.62% |
Span: 219bp (35.9%) |
Frame: 2 |
| At1g71800.1 68408.m07614 cleavage stimulation factor, putative similar to cleavage stimulation factor 64 kilodalton s... |
| Match: At3g52150.1 |
score: 45.82 |
e-value: 1.8e-05 |
Identity: 35.62% |
Span: 219bp (35.9%) |
Frame: 2 |
| At3g52150.1 68410.m05303 RNA recognition motif (RRM) - containing protein similar to chloroplast RNA-binding protein ... |
| Match: At2g43370.1 |
score: 45.82 |
e-value: 1.8e-05 |
Identity: 25% |
Span: 240bp (39.3%) |
Frame: 2 |
| At2g43370.1 68409.m04872 U1 small nuclear ribonucleoprotein 70 kDa, putative |
| Match: At3g52150.1 |
score: 43.51 |
e-value: 8.9e-05 |
Identity: 28.95% |
Span: 228bp (37.4%) |
Frame: 2 |
| At3g52150.1 68410.m05303 RNA recognition motif (RRM) - containing protein similar to chloroplast RNA-binding protein ... |
| Match: At2g18510.1 |
score: 42.74 |
e-value: 0.00015 |
Identity: 29.63% |
Span: 243bp (39.8%) |
Frame: 2 |
| At2g18510.1 68409.m01948 pre-mRNA splicing factor SF3b, putative |
| Match: At2g37220.1 |
score: 42.74 |
e-value: 0.00015 |
Identity: 29.87% |
Span: 231bp (37.9%) |
Frame: 2 |
| At2g37220.1 68409.m04132 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative similar to SP|Q43... |
| Match: At3g53460.2 |
score: 40.43 |
e-value: 0.00076 |
Identity: 28.57% |
Span: 231bp (37.9%) |
Frame: 2 |
| At3g53460.2 68410.m06876 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29) nearly identical to SP|Q433... |
| Match: At3g53460.1 |
score: 40.43 |
e-value: 0.00076 |
Identity: 28.57% |
Span: 231bp (37.9%) |
Frame: 2 |
| At3g53460.1 68410.m06875 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29) nearly identical to SP|Q433... |
| Match: At3g52380.1 |
score: 39.66 |
e-value: 0.001 |
Identity: 47.37% |
Span: 114bp (18.7%) |
Frame: 2 |
| At3g52380.1 68410.m05334 33 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp33), putative similar to chloro... |
| Match: At5g54900.1 |
score: 39.66 |
e-value: 0.001 |
Identity: 33.8% |
Span: 207bp (33.9%) |
Frame: 2 |
| At5g54900.1 68412.m06186 RNA binding protein 45 (RBP45), putative contains similarity to polyadenylate-binding protei... |
| Match: At2g46780.1 |
score: 38.51 |
e-value: 0.003 |
Identity: 27.16% |
Span: 243bp (39.8%) |
Frame: 2 |
| At2g46780.1 68409.m05273 RNA recognition motif (RRM) - containing protein contains InterPro entry IPR000504: RNA-bind... |
| Match: At5g51300.2 |
score: 38.51 |
e-value: 0.003 |
Identity: 22.5% |
Span: 240bp (39.3%) |
Frame: 2 |
| At5g51300.2 68412.m07949 splicing factor 1 (SF1), putative contains similarity to transcription or splicing factor |
| Match: At5g51300.1 |
score: 38.51 |
e-value: 0.003 |
Identity: 22.5% |
Span: 240bp (39.3%) |
Frame: 2 |
| At5g51300.1 68412.m07948 splicing factor 1 (SF1), putative contains similarity to transcription or splicing factor |
| Match: At1g60000.1 |
score: 38.12 |
e-value: 0.004 |
Identity: 25.32% |
Span: 237bp (38.9%) |
Frame: 2 |
| At1g60000.1 68408.m06195 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative similar to 29 kDa... |
| Match: At3g16380.1 |
score: 37.74 |
e-value: 0.005 |
Identity: 27.91% |
Span: 258bp (42.3%) |
Frame: 2 |
| At3g16380.1 68410.m01870 polyadenylate-binding protein (poly(A)-binding protein), putative similar to polyadenylate-b... |
| Match: At3g26420.1 |
score: 37.74 |
e-value: 0.005 |
Identity: 21.69% |
Span: 249bp (40.8%) |
Frame: 2 |
| At3g26420.1 68410.m03017 glycine-rich RNA-binding protein similar to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotian... |
| Match: At5g06210.1 |
score: 37.35 |
e-value: 0.006 |
Identity: 24.42% |
Span: 258bp (42.3%) |
Frame: 2 |
| At5g06210.1 68412.m00645 RNA-binding protein, putative contains similarity to RNA-binding protein from [Nicotiana tab... |
| Match: At3g46020.1 |
score: 36.96 |
e-value: 0.008 |
Identity: 24.32% |
Span: 222bp (36.4%) |
Frame: 2 |
| At3g46020.1 68410.m04612 RNA-binding protein, putative similar to Cold-inducible RNA-binding protein (Glycine-rich RN... |
| Match: At3g53460.2 |
score: 36.96 |
e-value: 0.008 |
Identity: 25.97% |
Span: 231bp (37.9%) |
Frame: 2 |
| At3g53460.2 68410.m06876 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29) nearly identical to SP|Q433... |
| Match: At3g53460.1 |
score: 36.96 |
e-value: 0.008 |
Identity: 25.97% |
Span: 231bp (37.9%) |
Frame: 2 |
| At3g53460.1 68410.m06875 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29) nearly identical to SP|Q433... |
| Match: At4g24770.1 |
score: 36.96 |
e-value: 0.008 |
Identity: 26.58% |
Span: 237bp (38.9%) |
Frame: 2 |
| At4g24770.1 68411.m03231 31 kDa ribonucleoprotein, chloroplast (RNA-binding protein RNP-T / RNA-binding protein 1/2/3... |
| Match: At5g09880.1 |
score: 36.58 |
e-value: 0.011 |
Identity: 31.08% |
Span: 219bp (35.9%) |
Frame: 2 |
| At5g09880.1 68412.m01056 RRM-containing protein |
| Match: At2g23350.1 |
score: 36.58 |
e-value: 0.011 |
Identity: 30.26% |
Span: 228bp (37.4%) |
Frame: 2 |
| At2g23350.1 68409.m02523 polyadenylate-binding protein (PABP), putative |
| Match: At1g22760.1 |
score: 36.19 |
e-value: 0.014 |
Identity: 25% |
Span: 216bp (35.4%) |
Frame: 2 |
| At1g22760.1 68408.m02574 polyadenylate-binding protein 3 (PABP3) |
| Match: At1g49760.1 |
score: 35.81 |
e-value: 0.019 |
Identity: 32.39% |
Span: 213bp (34.9%) |
Frame: 2 |
| At1g49760.1 68408.m05111 polyadenylate-binding protein (PABP), putative similar to poly(A)-binding protein GB:AAF6682... |
| Match: At1g49760.1 |
score: 35.81 |
e-value: 0.019 |
Identity: 25% |
Span: 216bp (35.4%) |
Frame: 2 |
| At1g49760.1 68408.m05111 polyadenylate-binding protein (PABP), putative similar to poly(A)-binding protein GB:AAF6682... |
| Match: At1g49760.1 |
score: 35.81 |
e-value: 0.019 |
Identity: 23.17% |
Span: 240bp (39.3%) |
Frame: 2 |
| At1g49760.1 68408.m05111 polyadenylate-binding protein (PABP), putative similar to poly(A)-binding protein GB:AAF6682... |
| Match: At5g40490.1 |
score: 35.81 |
e-value: 0.019 |
Identity: 22.22% |
Span: 243bp (39.8%) |
Frame: 2 |
| At5g40490.1 68412.m04421 RNA recognition motif (RRM) - containing protein ribonucleoprotein, Xenopus laevis, PIR:S407... |
| Match: At4g34110.1 |
score: 35.81 |
e-value: 0.019 |
Identity: 30.99% |
Span: 213bp (34.9%) |
Frame: 2 |
| At4g34110.1 68411.m04401 polyadenylate-binding protein 2 (PABP2) non-consensus TA donor splice site at exon 2, polyad... |
| Match: At3g52380.1 |
score: 35.42 |
e-value: 0.024 |
Identity: 23.86% |
Span: 264bp (43.3%) |
Frame: 2 |
| At3g52380.1 68410.m05334 33 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp33), putative similar to chloro... |
| Match: At1g22760.1 |
score: 35.42 |
e-value: 0.024 |
Identity: 28.57% |
Span: 270bp (44.3%) |
Frame: 2 |
| At1g22760.1 68408.m02574 polyadenylate-binding protein 3 (PABP3) |
| Match: At3g54230.1 |
score: 35.42 |
e-value: 0.024 |
Identity: 23.81% |
Span: 246bp (40.3%) |
Frame: 2 |
| At3g54230.1 68410.m05544 RRM-containing protein KIAA0122 gene , Homo sapiens, EMBL:HSDKG02 |
| Match: At2g37220.1 |
score: 35.04 |
e-value: 0.032 |
Identity: 26.03% |
Span: 219bp (35.9%) |
Frame: 2 |
| At2g37220.1 68409.m04132 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative similar to SP|Q43... |
| Match: At5g24440.1 |
score: 34.65 |
e-value: 0.041 |
Identity: 38.98% |
Span: 177bp (29.0%) |
Frame: 2 |
| At5g24440.1 68412.m02635 RNA-binding protein, putative |
| Match: At4g39260.2 |
score: 34.27 |
e-value: 0.054 |
Identity: 25% |
Span: 228bp (37.4%) |
Frame: 2 |
| At4g39260.2 68411.m05437 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein ... |
| Match: At1g32790.1 |
score: 34.27 |
e-value: 0.054 |
Identity: 35% |
Span: 180bp (29.5%) |
Frame: 2 |
| At1g32790.1 68408.m03661 RNA-binding protein, putative similar to RNA-binding protein GB:CAB40027 GI:4539439 from [Ar... |
| Match: At4g39260.1 |
score: 34.27 |
e-value: 0.054 |
Identity: 25% |
Span: 228bp (37.4%) |
Frame: 2 |
| At4g39260.1 68411.m05436 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein ... |
| Match: At4g39260.3 |
score: 34.27 |
e-value: 0.054 |
Identity: 25% |
Span: 228bp (37.4%) |
Frame: 2 |
| At4g39260.3 68411.m05438 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein ... |
| Match: At2g21660.2 |
score: 33.88 |
e-value: 0.071 |
Identity: 23.68% |
Span: 228bp (37.4%) |
Frame: 2 |
| At2g21660.2 68409.m05725 glycine-rich RNA-binding protein (AtGRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arab... |
| Match: At1g71770.1 |
score: 33.88 |
e-value: 0.071 |
Identity: 25% |
Span: 216bp (35.4%) |
Frame: 2 |
| At1g71770.1 68408.m07610 polyadenylate-binding protein 5 (PABP5) identical to GB:Q05196 from [Arabidopsis thaliana] |
| Match: At2g21660.1 |
score: 33.88 |
e-value: 0.071 |
Identity: 23.68% |
Span: 228bp (37.4%) |
Frame: 2 |
| At2g21660.1 68409.m05724 glycine-rich RNA-binding protein (AtGRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arab... |
| Match: At2g27330.1 |
score: 33.88 |
e-value: 0.071 |
Identity: 27.16% |
Span: 243bp (39.8%) |
Frame: 2 |
| At2g27330.1 68409.m02980 RRM-containing protein |
| Match: At1g53650.1 |
score: 33.5 |
e-value: 0.092 |
Identity: 35% |
Span: 180bp (29.5%) |
Frame: 2 |
| At1g53650.1 68408.m05600 RNA-binding protein, putative similar to RNA-binding protein GB:AAA86641 GI:1174153 from [Ar... |
| Match: At5g50250.1 |
score: 33.5 |
e-value: 0.092 |
Identity: 25.68% |
Span: 222bp (36.4%) |
Frame: 2 |
| At5g50250.1 68412.m05614 31 kDa ribonucleoprotein, chloroplast (RNA-binding protein RNP-T / RNA-binding protein 1/2/3... |
|
