| genbank/nr [blastx] | Showing best 64 hits recorded |
| Match: gi|15231127|ref|NP_190777.1| |
score: 204.1 |
e-value: 1.4e-51 |
Identity: 82.76% |
Span: 348bp (54.6%) |
Frame: 1 |
| NRPB11; DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] >gi3219858|sp|Q38859.1|RPB11_ARATH RecName: ... |
| Match: gi|34394446|dbj|BAC83620.1| |
score: 187.6 |
e-value: 1.4e-46 |
Identity: 78.57% |
Span: 336bp (52.7%) |
Frame: 1 |
| gi|34394446|dbj|BAC83620.1| putative DNA-directed RNA polymerase II 13.6K chain [Oryza sativa (japonica cultivar-group)] |
| Match: gi|6755362|ref|NP_035423.1| |
score: 126.3 |
e-value: 3.8e-28 |
Identity: 51.38% |
Span: 327bp (51.3%) |
Frame: 1 |
| gi|6755362|ref|NP_035423.1| polymerase (RNA) II (DNA directed) polypeptide J; RNA polymerase II 4 (14 kDa subunit); R... |
| Match: gi|47211212|emb|CAF90169.1| |
score: 125.2 |
e-value: 8.4e-28 |
Identity: 54.29% |
Span: 315bp (49.5%) |
Frame: 1 |
| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|31239143|ref|XP_319985.1| |
score: 124 |
e-value: 1.9e-27 |
Identity: 57.14% |
Span: 315bp (49.5%) |
Frame: 1 |
| gi|31239143|ref|XP_319985.1| ENSANGP00000016837 [Anopheles gambiae] gi|21302568|gb|EAA14713.1| ENSANGP00000016837 [An... |
| Match: gi|5453932|ref|NP_006225.1| |
score: 123.6 |
e-value: 2.4e-27 |
Identity: 52.38% |
Span: 315bp (49.5%) |
Frame: 1 |
| gi|5453932|ref|NP_006225.1| DNA directed RNA polymerase II polypeptide J [Homo sapiens] gi|27664048|ref|XP_213753.1| ... |
| Match: gi|11595485|emb|CAC18368.1| |
score: 123.6 |
e-value: 2.4e-27 |
Identity: 52.38% |
Span: 315bp (49.5%) |
Frame: 1 |
| RPB11a protein [Homo sapiens] |
| Match: gi|28828983|gb|AAO51563.1| |
score: 123.6 |
e-value: 2.4e-27 |
Identity: 47.75% |
Span: 333bp (52.3%) |
Frame: 1 |
| gi|28828983|gb|AAO51563.1| similar to DNA-directed RNA polymerase II 13.6K chain; protein id: At3g52090.1, supported ... |
| Match: gi|19921456|ref|NP_609836.1| |
score: 123.2 |
e-value: 3.2e-27 |
Identity: 53.77% |
Span: 318bp (49.9%) |
Frame: 1 |
| gi|19921456|ref|NP_609836.1| CG6840-PA [Drosophila melanogaster] gi|11387116|sp|Q9VJE4|RPBY_DROME DNA-directed RNA po... |
| Match: gi|21704274|ref|NP_663165.1| |
score: 118.2 |
e-value: 1e-25 |
Identity: 51.43% |
Span: 315bp (49.5%) |
Frame: 1 |
| gi|21704274|ref|NP_663165.1| DNA directed RNA polymerase II polypeptide J-related gene isoform 1; RPB11b1alpha protei... |
| Match: gi|21704272|ref|NP_116581.2| |
score: 118.2 |
e-value: 1e-25 |
Identity: 51.43% |
Span: 315bp (49.5%) |
Frame: 1 |
| gi|21704272|ref|NP_116581.2| DNA directed RNA polymerase II polypeptide J-related gene isoform 3; RPB11b1alpha protei... |
| Match: gi|19401711|gb|AAL87672.1| |
score: 117.5 |
e-value: 1.7e-25 |
Identity: 51.43% |
Span: 315bp (49.5%) |
Frame: 1 |
| gi|19401711|gb|AAL87672.1| DNA-directed RNA polymerase II subunit 11 [Homo sapiens] |
| Match: gi|11595478|emb|CAC18331.1| |
score: 117.5 |
e-value: 1.7e-25 |
Identity: 51.43% |
Span: 315bp (49.5%) |
Frame: 1 |
| gi|11595478|emb|CAC18331.1| RPB11b2alpha protein [Homo sapiens] gi|30172701|gb|AAP22342.1| unknown [Homo sapiens] |
| Match: gi|42658298|ref|XP_379819.1| |
score: 116.3 |
e-value: 3.9e-25 |
Identity: 50% |
Span: 315bp (49.5%) |
Frame: 1 |
| gi|42658298|ref|XP_379819.1| similar to DNA directed RNA polymerase II polypeptide J-related gene isoform 3; RPB11b1a... |
| Match: gi|40226460|gb|AAH17341.2| |
score: 116.3 |
e-value: 3.9e-25 |
Identity: 50% |
Span: 315bp (49.5%) |
Frame: 1 |
| gi|40226460|gb|AAH17341.2| MGC13098 protein [Homo sapiens] |
| Match: gi|33878913|gb|AAH17250.1| |
score: 116.3 |
e-value: 3.9e-25 |
Identity: 50% |
Span: 315bp (49.5%) |
Frame: 1 |
| gi|33878913|gb|AAH17250.1| MGC13098 protein [Homo sapiens] |
| Match: gi|39591340|emb|CAE73393.1| |
score: 115.2 |
e-value: 8.7e-25 |
Identity: 48.36% |
Span: 366bp (57.5%) |
Frame: 1 |
| gi|39591340|emb|CAE73393.1| Hypothetical protein CBG20834 [Caenorhabditis briggsae] |
| Match: gi|38571609|gb|AAH62722.1| |
score: 114 |
e-value: 1.9e-24 |
Identity: 49.06% |
Span: 315bp (49.5%) |
Frame: 1 |
| gi|38571609|gb|AAH62722.1| Unknown (protein for IMAGE:4074285) [Homo sapiens] |
| Match: gi|17536663|ref|NP_496942.1| |
score: 113.2 |
e-value: 3.3e-24 |
Identity: 50% |
Span: 342bp (53.7%) |
Frame: 1 |
| gi|17536663|ref|NP_496942.1| polymerase II (13.7 kD) (2O351) [Caenorhabditis elegans] gi|11387118|sp|Q9XVH6|RPBY_CAEE... |
| Match: gi|25012186|gb|AAN71209.1| |
score: 112.1 |
e-value: 7.3e-24 |
Identity: 45.6% |
Span: 318bp (49.9%) |
Frame: 1 |
| gi|25012186|gb|AAN71209.1| GM15177p [Drosophila melanogaster] |
| Match: gi|45185683|ref|NP_983399.1| |
score: 109.8 |
e-value: 3.6e-23 |
Identity: 50% |
Span: 324bp (50.9%) |
Frame: 1 |
| gi|45185683|ref|NP_983399.1| ACL005Cp [Eremothecium gossypii] >gi|44981438|gb|AAS51223.1| ACL005Cp [Eremothecium goss... |
| Match: gi|49093890|ref|XP_408406.1| |
score: 109.4 |
e-value: 4.7e-23 |
Identity: 50% |
Span: 324bp (50.9%) |
Frame: 1 |
| gi|49093890|ref|XP_408406.1| hypothetical protein AN4269.2 [Aspergillus nidulans FGSC A4] >gi|40739747|gb|EAA58937.1|... |
| Match: gi|745556|prf||2016335A |
score: 108.2 |
e-value: 1.1e-22 |
Identity: 51.61% |
Span: 279bp (43.8%) |
Frame: 1 |
| gi|745556|prf||2016335A RNA polymerase II:SUBUNIT=14kD |
| Match: gi|6324569|ref|NP_014638.1| |
score: 102.4 |
e-value: 5.8e-21 |
Identity: 47.22% |
Span: 324bp (50.9%) |
Frame: 1 |
| gi|6324569|ref|NP_014638.1| RNA polymerase II subunit, homologous to S. pombe Rpb11p subunit; Rpb11p [Saccharomyces c... |
| Match: gi|19114245|ref|NP_593333.1| |
score: 98.6 |
e-value: 8.4e-20 |
Identity: 46.3% |
Span: 324bp (50.9%) |
Frame: 1 |
| gi|19114245|ref|NP_593333.1| dna-directed rna polymerase ii 14.1 kd polypeptide [Schizosaccharomyces pombe] gi|321985... |
| Match: gi|49071300|ref|XP_399939.1| |
score: 91.28 |
e-value: 1.3e-17 |
Identity: 40.74% |
Span: 324bp (50.9%) |
Frame: 1 |
| gi|49071300|ref|XP_399939.1| hypothetical protein UM02324.1 [Ustilago maydis 521] >gi|46097891|gb|EAK83124.1| hypothe... |
| Match: gi|12718487|emb|CAC28816.1| |
score: 82.03 |
e-value: 8.1e-15 |
Identity: 38.18% |
Span: 330bp (51.8%) |
Frame: 1 |
| gi|12718487|emb|CAC28816.1| related to DNA-directed RNA polymerase 13.3K chain [Neurospora crassa] |
| Match: gi|32404940|ref|XP_323083.1| |
score: 69.32 |
e-value: 5.4e-11 |
Identity: 34.62% |
Span: 312bp (49.0%) |
Frame: 1 |
| gi|32404940|ref|XP_323083.1| hypothetical protein ( (AL513466) related to DNA-directed RNA polymerase 13.3K chain [Ne... |
| Match: gi|38108468|gb|EAA54478.1| |
score: 68.55 |
e-value: 9.3e-11 |
Identity: 33.33% |
Span: 306bp (48.0%) |
Frame: 1 |
| gi|38108468|gb|EAA54478.1| hypothetical protein MG02463.4 [Magnaporthe grisea 70-15] |
| Match: gi|46124881|ref|XP_386994.1| |
score: 67.4 |
e-value: 2.1e-10 |
Identity: 30.84% |
Span: 321bp (50.4%) |
Frame: 1 |
| gi|46124881|ref|XP_386994.1| hypothetical protein FG06818.1 [Gibberella zeae PH-1] >gi|42553907|gb|EAA76750.1| hypoth... |
| Match: gi|21842229|gb|AAM77741.1| |
score: 65.08 |
e-value: 1e-09 |
Identity: 31.25% |
Span: 312bp (49.0%) |
Frame: 1 |
| gi|21842229|gb|AAM77741.1| RNA polymerase II subunit Rpb11 [Giardia intestinalis] gi|29249407|gb|EAA40919.1| GLP_186_... |
| Match: gi|23618985|ref|NP_704947.1| |
score: 64.7 |
e-value: 1.3e-09 |
Identity: 32.43% |
Span: 333bp (52.3%) |
Frame: 1 |
| gi|23618985|ref|NP_704947.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7] gi|23615192|emb|CAD5... |
| Match: gi|23509371|ref|NP_702038.1| |
score: 63.93 |
e-value: 2.3e-09 |
Identity: 36.17% |
Span: 282bp (44.3%) |
Frame: 1 |
| gi|23509371|ref|NP_702038.1| RNA polymerase small subunit, putative [Plasmodium falciparum 3D7] gi|23497215|gb|AAN367... |
| Match: gi|49069020|ref|XP_398799.1| |
score: 62.77 |
e-value: 5.1e-09 |
Identity: 43.42% |
Span: 228bp (35.8%) |
Frame: 1 |
| gi|49069020|ref|XP_398799.1| hypothetical protein UM01184.1 [Ustilago maydis 521] >gi|46096735|gb|EAK81968.1| hypothe... |
| Match: gi|39590793|emb|CAE65166.1| |
score: 62.39 |
e-value: 6.7e-09 |
Identity: 34.78% |
Span: 276bp (43.3%) |
Frame: 1 |
| gi|39590793|emb|CAE65166.1| Hypothetical protein CBG10036 [Caenorhabditis briggsae] |
| Match: gi|19114031|ref|NP_593119.1| |
score: 62.39 |
e-value: 6.7e-09 |
Identity: 31.4% |
Span: 258bp (40.5%) |
Frame: 1 |
| gi|19114031|ref|NP_593119.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide [Schizosaccharomyces pombe] gi|... |
| Match: gi|2500635|sp|Q09177|RPC9_SCHPO |
score: 62.39 |
e-value: 6.7e-09 |
Identity: 31.4% |
Span: 258bp (40.5%) |
Frame: 1 |
| gi|2500635|sp|Q09177|RPC9_SCHPO DNA-directed RNA polymerases I and III 14 kDa polypeptide gi|11279187|pir||T43414 DNA... |
| Match: gi|23479513|gb|EAA16320.1| |
score: 61.62 |
e-value: 1.1e-08 |
Identity: 50% |
Span: 174bp (27.3%) |
Frame: 1 |
| gi|23479513|gb|EAA16320.1| RNA polymerases L / 13 to 16 kDa subunit [Plasmodium yoelii yoelii] |
| Match: gi|17553746|ref|NP_499132.1| |
score: 61.62 |
e-value: 1.1e-08 |
Identity: 35.63% |
Span: 261bp (41.0%) |
Frame: 1 |
| gi|17553746|ref|NP_499132.1| rna polymerase (16.6 kD) (3K718) [Caenorhabditis elegans] gi|464673|sp|P34476|RPC9_CAEEL... |
| Match: gi|7705740|ref|NP_057056.1| |
score: 60.08 |
e-value: 3.3e-08 |
Identity: 33.33% |
Span: 243bp (38.1%) |
Frame: 1 |
| gi|7705740|ref|NP_057056.1| RNA polymerase I 16 kDa subunit [Homo sapiens] gi|11387119|sp|Q9Y2S0|RPA9_HUMAN DNA-direc... |
| Match: gi|31232297|ref|XP_318678.1| |
score: 60.08 |
e-value: 3.3e-08 |
Identity: 32.14% |
Span: 252bp (39.6%) |
Frame: 1 |
| gi|31232297|ref|XP_318678.1| ENSANGP00000022241 [Anopheles gambiae] gi|30174498|gb|EAA14103.2| ENSANGP00000022241 [An... |
| Match: gi|13811975|ref|NP_113104.1| |
score: 59.31 |
e-value: 5.6e-08 |
Identity: 33.68% |
Span: 285bp (44.7%) |
Frame: 1 |
| gi|13811975|ref|NP_113104.1| dna directed RNA polymerase II 13.6 kDa chain [Guillardia theta] gi|25396913|pir||H90122... |
| Match: gi|46431930|gb|EAK91447.1| |
score: 59.31 |
e-value: 5.6e-08 |
Identity: 33.77% |
Span: 231bp (36.3%) |
Frame: 1 |
| gi|46431930|gb|EAK91447.1| hypothetical protein CaO19.7805 [Candida albicans SC5314] >gi|46431945|gb|EAK91461.1| hypo... |
| Match: gi|6324215|ref|NP_014286.1| |
score: 58.92 |
e-value: 7.4e-08 |
Identity: 34.21% |
Span: 228bp (35.8%) |
Frame: 1 |
| gi|6324215|ref|NP_014286.1| subunit common to RNA polymerases I (A) and III (C); Rpc19p [Saccharomyces cerevisiae] gi... |
| Match: gi|25453545|pir||JC4847 |
score: 58.54 |
e-value: 9.6e-08 |
Identity: 34.15% |
Span: 246bp (38.6%) |
Frame: 1 |
| gi|25453545|pir||JC4847 DNA-directed RNA polymerase (EC 2.7.7.6) chain III - Arabidopsis thaliana |
| Match: gi|15227556|ref|NP_180514.1| |
score: 58.54 |
e-value: 9.6e-08 |
Identity: 34.15% |
Span: 246bp (38.6%) |
Frame: 1 |
| ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/ protein dimerization [Arabidopsis... |
| Match: gi|6677791|ref|NP_033113.1| |
score: 57.77 |
e-value: 1.6e-07 |
Identity: 34.62% |
Span: 234bp (36.7%) |
Frame: 1 |
| gi|6677791|ref|NP_033113.1| RNA polymerase 1-3; RIKEN cDNA 1110003G10 [Mus musculus] gi|11387094|sp|P97304|RPA9_MOUSE... |
| Match: gi|29250803|gb|EAA42291.1| |
score: 55.84 |
e-value: 6.2e-07 |
Identity: 50% |
Span: 156bp (24.5%) |
Frame: 1 |
| gi|29250803|gb|EAA42291.1| GLP_440_20098_20403 [Giardia lamblia ATCC 50803] |
| Match: gi|15897236|ref|NP_341841.1| |
score: 55.45 |
e-value: 8.1e-07 |
Identity: 35.44% |
Span: 237bp (37.2%) |
Frame: 1 |
| gi|15897236|ref|NP_341841.1| DNA-directed RNA polymerase, subunit L (rpoL) [Sulfolobus solfataricus] gi|21263959|sp|Q... |
| Match: gi|49098727|ref|XP_410695.1| |
score: 55.45 |
e-value: 8.1e-07 |
Identity: 34.21% |
Span: 228bp (35.8%) |
Frame: 1 |
| gi|49098727|ref|XP_410695.1| hypothetical protein AN6558.2 [Aspergillus nidulans FGSC A4] >gi|40738708|gb|EAA57898.1|... |
| Match: gi|14702175|ref|NP_116580.1| |
score: 54.68 |
e-value: 1.4e-06 |
Identity: 48.94% |
Span: 141bp (22.1%) |
Frame: 1 |
| gi|14702175|ref|NP_116580.1| DNA directed RNA polymerase II polypeptide J-related gene isoform 2; RPB11b1alpha protei... |
| Match: gi|29791497|gb|AAH50405.1| |
score: 53.91 |
e-value: 2.4e-06 |
Identity: 48.94% |
Span: 141bp (22.1%) |
Frame: 1 |
| gi|29791497|gb|AAH50405.1| Similar to DNA directed RNA polymerase II polypeptide J-related gene [Homo sapiens] |
| Match: gi|30172700|gb|AAP22341.1| |
score: 53.91 |
e-value: 2.4e-06 |
Identity: 48.94% |
Span: 141bp (22.1%) |
Frame: 1 |
| gi|30172700|gb|AAP22341.1| unknown [Homo sapiens] |
| Match: gi|42658567|ref|XP_379908.1| |
score: 53.91 |
e-value: 2.4e-06 |
Identity: 48.94% |
Span: 141bp (22.1%) |
Frame: 1 |
| gi|42658567|ref|XP_379908.1| similar to DNA directed RNA polymerase II polypeptide J-related gene isoform 2; RPB11b1a... |
| Match: gi|45198301|ref|NP_985330.1| |
score: 53.53 |
e-value: 3.1e-06 |
Identity: 33.33% |
Span: 225bp (35.3%) |
Frame: 1 |
| gi|45198301|ref|NP_985330.1| AFL220Cp [Eremothecium gossypii] >gi|44984188|gb|AAS53154.1| AFL220Cp [Eremothecium goss... |
| Match: gi|32403784|ref|XP_322505.1| |
score: 52.37 |
e-value: 6.9e-06 |
Identity: 31.58% |
Span: 228bp (35.8%) |
Frame: 1 |
| gi|32403784|ref|XP_322505.1| hypothetical protein [Neurospora crassa] gi|28918394|gb|EAA28069.1| hypothetical protein... |
| Match: gi|24585154|ref|NP_609950.1| |
score: 51.6 |
e-value: 1.2e-05 |
Identity: 33.75% |
Span: 240bp (37.7%) |
Frame: 1 |
| gi|24585154|ref|NP_609950.1| CG10685-PA [Drosophila melanogaster] gi|7298551|gb|AAF53770.1| CG10685-PA [Drosophila me... |
| Match: gi|15922592|ref|NP_378261.1| |
score: 51.6 |
e-value: 1.2e-05 |
Identity: 35.44% |
Span: 225bp (35.3%) |
Frame: 1 |
| gi|15922592|ref|NP_378261.1| 93aa long hypothetical DNA-directed RNA polymerase subunit L [Sulfolobus tokodaii] gi|21... |
| Match: gi|23489608|gb|EAA21618.1| |
score: 51.6 |
e-value: 1.2e-05 |
Identity: 47.73% |
Span: 132bp (20.7%) |
Frame: 1 |
| gi|23489608|gb|EAA21618.1| RNA polymerases L / 13 to 16 kDa subunit, putative [Plasmodium yoelii yoelii] |
| Match: gi|38110653|gb|EAA56340.1| |
score: 51.22 |
e-value: 1.5e-05 |
Identity: 33.33% |
Span: 228bp (35.8%) |
Frame: 1 |
| gi|38110653|gb|EAA56340.1| hypothetical protein MG06311.4 [Magnaporthe grisea 70-15] |
| Match: gi|46125119|ref|XP_387113.1| |
score: 48.91 |
e-value: 7.6e-05 |
Identity: 32.89% |
Span: 228bp (35.8%) |
Frame: 1 |
| gi|46125119|ref|XP_387113.1| hypothetical protein FG06937.1 [Gibberella zeae PH-1] >gi|42554141|gb|EAA76984.1| hypoth... |
| Match: gi|47187235|emb|CAG14790.1| |
score: 48.52 |
e-value: 9.9e-05 |
Identity: 45.65% |
Span: 138bp (21.7%) |
Frame: 1 |
| gi|47187235|emb|CAG14790.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|1173166|sp|P46217|RPOL_SULAC |
score: 46.59 |
e-value: 0.00038 |
Identity: 38.1% |
Span: 189bp (29.7%) |
Frame: 1 |
| gi|1173166|sp|P46217|RPOL_SULAC DNA-directed RNA polymerase subunit L gi|7447311|pir||S78047 DNA-directed RNA polymer... |
| Match: gi|19173564|ref|NP_597367.1| |
score: 45.44 |
e-value: 0.00084 |
Identity: 24.18% |
Span: 273bp (42.9%) |
Frame: 1 |
| gi|19173564|ref|NP_597367.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi] gi|19170770|emb|CAD26544.1| DN... |
|
| arabidopsis/peptide [blastx] | Showing best 2 hits recorded |
| Match: At3g52090.1 |
score: 204.1 |
e-value: 4.2e-53 |
Identity: 82.76% |
Span: 348bp (54.6%) |
Frame: 1 |
| At3g52090.1 68410.m05296 DNA-directed RNA polymerase II 13.6K chain |
| Match: At2g29540.1 |
score: 58.54 |
e-value: 2.9e-09 |
Identity: 34.15% |
Span: 246bp (38.6%) |
Frame: 1 |
| At2g29540.1 68409.m03248 DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14) identical to GB:U35049, contains RNA p... |
|
