| arabidopsis/peptide [blastx] | Showing best 1 hits recorded |
| Match: At1G56345.1 |
score: 186 |
e-value: 1e-47 |
Identity: 65.99% |
Span: 441bp (68.4%) |
Frame: 3 |
| pseudouridine synthase family protein | chr1:21097074-21098119 REVERSE |
|
| 4 lower scoring hits censored -- only 1 best hits are stored. |
| genbank/nr [blastx] | Showing best 100 hits recorded |
| Match: gi|92886361|gb|ABE88286.1| |
score: 186 |
e-value: 8e-46 |
Identity: 66.67% |
Span: 441bp (68.4%) |
Frame: 3 |
| Pseudouridine |
| Match: gi|30696108|ref|NP_176031.2| |
score: 186 |
e-value: 6e-46 |
Identity: 65.99% |
Span: 441bp (68.4%) |
Frame: 3 |
| pseudouridine synthase family protein [Arabidopsis thaliana] >gi75140931|sp|Q7XA65.1|PUS1_ARATH RecName: Full=RNA pse... |
| Match: gi|12323024|gb|AAG51501.1| |
score: 186 |
e-value: 6e-46 |
Identity: 65.99% |
Span: 441bp (68.4%) |
Frame: 3 |
| gi|12323024|gb|AAG51501.1| unknown protein [Arabidopsis thaliana] |
| Match: gi|77556134|gb|ABA98930.1| |
score: 177 |
e-value: 3e-43 |
Identity: 62.5% |
Span: 498bp (77.2%) |
Frame: 3 |
| gi|77556134|gb|ABA98930.1| RNA pseudouridylate synthase, putative [Oryza sativa (japonica cultivar-group)] |
| Match: gi|12321745|gb|AAG50905.1| |
score: 171 |
e-value: 3e-41 |
Identity: 63.41% |
Span: 369bp (57.2%) |
Frame: 3 |
| gi|12321745|gb|AAG50905.1| RNA pseudouridylate synthase, putative [Arabidopsis thaliana] |
| Match: gi|106891130|ref|ZP_01358319.1| |
score: 94.7 |
e-value: 3e-18 |
Identity: 40.77% |
Span: 366bp (56.7%) |
Frame: 3 |
| Pseudouridine |
| Match: gi|76260969|ref|ZP_00768594.1| |
score: 76.3 |
e-value: 9e-13 |
Identity: 35.88% |
Span: 369bp (57.2%) |
Frame: 3 |
| gi|76260969|ref|ZP_00768594.1| Pseudouridine synthase [Chloroflexus aurantiacus J-10-fl] >gi|76164158|gb|EAO58313.1| ... |
| Match: gi|110609605|ref|ZP_01397637.1| |
score: 67.8 |
e-value: 3e-10 |
Identity: 38.14% |
Span: 279bp (43.3%) |
Frame: 3 |
| Pseudouridine |
| Match: gi|83858519|ref|ZP_00952041.1| |
score: 64.7 |
e-value: 3e-09 |
Identity: 39.78% |
Span: 267bp (41.4%) |
Frame: 3 |
| ribosomal |
| Match: gi|13423445|gb|AAK23955.1| |
score: 63.5 |
e-value: 6e-09 |
Identity: 39.77% |
Span: 255bp (39.5%) |
Frame: 3 |
| gi|13423445|gb|AAK23955.1| ribosomal large subunit pseudouridine synthase C [Caulobacter crescentus CB15] >gi|1612622... |
| Match: gi|99034362|ref|ZP_01314387.1| |
score: 63.2 |
e-value: 8e-09 |
Identity: 36.56% |
Span: 270bp (41.9%) |
Frame: 3 |
| hypothetical |
| Match: gi|58698525|ref|ZP_00373428.1| |
score: 63.2 |
e-value: 8e-09 |
Identity: 36.56% |
Span: 270bp (41.9%) |
Frame: 3 |
| gi|58698525|ref|ZP_00373428.1| ribosomal large subunit pseudouridine synthase C, putative [Wolbachia endosymbiont of ... |
| Match: gi|42410028|gb|AAS14139.1| |
score: 63.2 |
e-value: 8e-09 |
Identity: 36.56% |
Span: 270bp (41.9%) |
Frame: 3 |
| ribosomal |
| Match: gi|84701461|ref|ZP_01016036.1| |
score: 62.4 |
e-value: 1e-08 |
Identity: 39.33% |
Span: 258bp (40.0%) |
Frame: 3 |
| Ribosomal |
| Match: gi|88607689|ref|YP_505141.1| |
score: 62 |
e-value: 2e-08 |
Identity: 40% |
Span: 261bp (40.5%) |
Frame: 3 |
| ribosomal |
| Match: gi|58418782|gb|AAW70797.1| |
score: 62 |
e-value: 2e-08 |
Identity: 35.48% |
Span: 270bp (41.9%) |
Frame: 3 |
| Pseudouridylate |
| Match: gi|6459564|gb|AAF11343.1| |
score: 61.6 |
e-value: 2e-08 |
Identity: 31.82% |
Span: 354bp (54.9%) |
Frame: 3 |
| ribosomal |
| Match: gi|91068615|gb|ABE04337.1| |
score: 59.7 |
e-value: 9e-08 |
Identity: 32.52% |
Span: 360bp (55.8%) |
Frame: 3 |
| Ribosomal |
| Match: gi|23128341|ref|ZP_00110190.1| |
score: 58.9 |
e-value: 2e-07 |
Identity: 37.5% |
Span: 261bp (40.5%) |
Frame: 3 |
| gi|23128341|ref|ZP_00110190.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Nostoc punctiforme] |
| Match: gi|94984711|ref|YP_604075.1| |
score: 58.5 |
e-value: 2e-07 |
Identity: 31.3% |
Span: 303bp (47.0%) |
Frame: 3 |
| Pseudouridine |
| Match: gi|17133215|dbj|BAB75779.1| |
score: 58.2 |
e-value: 3e-07 |
Identity: 36.46% |
Span: 261bp (40.5%) |
Frame: 3 |
| gi|17133215|dbj|BAB75779.1| ribosomal large chain pseudouridine synthase A [Nostoc sp. PCC 7120] >gi|25535478|pir||AI... |
| Match: gi|75909345|ref|YP_323641.1| |
score: 57.4 |
e-value: 4e-07 |
Identity: 36.46% |
Span: 261bp (40.5%) |
Frame: 3 |
| gi|75909345|ref|YP_323641.1| Pseudouridine synthase [Anabaena variabilis ATCC 29413] >gi|75703070|gb|ABA22746.1| Pseu... |
| Match: gi|86156624|ref|YP_463409.1| |
score: 57 |
e-value: 6e-07 |
Identity: 31.62% |
Span: 369bp (57.2%) |
Frame: 3 |
| Pseudouridine |
| Match: gi|72127019|ref|XP_792641.1| |
score: 57 |
e-value: 6e-07 |
Identity: 37.62% |
Span: 267bp (41.4%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|53732594|ref|ZP_00349525.1| |
score: 57 |
e-value: 6e-07 |
Identity: 30.63% |
Span: 327bp (50.7%) |
Frame: 3 |
| gi|53732594|ref|ZP_00349525.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Haemophilus influenzae R2846] |
| Match: gi|102191573|ref|ZP_01347385.1| |
score: 56.6 |
e-value: 8e-07 |
Identity: 35.96% |
Span: 258bp (40.0%) |
Frame: 3 |
| hypothetical |
| Match: gi|33863383|ref|NP_894943.1| |
score: 56.6 |
e-value: 8e-07 |
Identity: 36.78% |
Span: 255bp (39.5%) |
Frame: 3 |
| gi|33863383|ref|NP_894943.1| putative pseudouridylate synthase [Prochlorococcus marinus str. MIT 9313] gi|33640832|em... |
| Match: gi|58617049|ref|YP_196248.1| |
score: 56.6 |
e-value: 8e-07 |
Identity: 30% |
Span: 261bp (40.5%) |
Frame: 3 |
| Ribosomal |
| Match: gi|94499595|ref|ZP_01306132.1| |
score: 56.2 |
e-value: 1e-06 |
Identity: 33.61% |
Span: 342bp (53.0%) |
Frame: 3 |
| ribosomal |
| Match: gi|58578991|ref|YP_197203.1| |
score: 56.2 |
e-value: 1e-06 |
Identity: 30% |
Span: 261bp (40.5%) |
Frame: 3 |
| Ribosomal |
| Match: gi|88857814|ref|ZP_01132456.1| |
score: 55.8 |
e-value: 1e-06 |
Identity: 34.02% |
Span: 270bp (41.9%) |
Frame: 3 |
| tRNA |
| Match: gi|89900510|ref|YP_522981.1| |
score: 55.8 |
e-value: 1e-06 |
Identity: 32.32% |
Span: 288bp (44.7%) |
Frame: 3 |
| Pseudouridine |
| Match: gi|93006645|ref|YP_581082.1| |
score: 55.5 |
e-value: 2e-06 |
Identity: 35.87% |
Span: 255bp (39.5%) |
Frame: 3 |
| Pseudouridylate |
| Match: gi|3860820|emb|CAA14720.1| |
score: 55.5 |
e-value: 2e-06 |
Identity: 33.64% |
Span: 312bp (48.4%) |
Frame: 3 |
| unknown |
| Match: gi|33504213|emb|CAD83475.1| |
score: 55.5 |
e-value: 2e-06 |
Identity: 37.78% |
Span: 255bp (39.5%) |
Frame: 3 |
| ribosomal |
| Match: gi|89095308|ref|ZP_01168227.1| |
score: 55.5 |
e-value: 2e-06 |
Identity: 34.31% |
Span: 279bp (43.3%) |
Frame: 3 |
| putative |
| Match: gi|58002512|gb|AAW61406.1| |
score: 55.5 |
e-value: 2e-06 |
Identity: 37.36% |
Span: 255bp (39.5%) |
Frame: 3 |
| Ribosomal |
| Match: gi|57240409|ref|ZP_00368358.1| |
score: 55.5 |
e-value: 2e-06 |
Identity: 33.64% |
Span: 321bp (49.8%) |
Frame: 3 |
| Pseudouridylate |
| Match: gi|1572988|gb|AAC21720.1| |
score: 55.1 |
e-value: 2e-06 |
Identity: 29.31% |
Span: 342bp (53.0%) |
Frame: 3 |
| conserved |
| Match: gi|39575486|emb|CAE79654.1| |
score: 55.1 |
e-value: 2e-06 |
Identity: 34.09% |
Span: 240bp (37.2%) |
Frame: 3 |
| ribosomal |
| Match: gi|68056792|gb|AAX87045.1| |
score: 55.1 |
e-value: 2e-06 |
Identity: 30.63% |
Span: 327bp (50.7%) |
Frame: 3 |
| conserved |
| Match: gi|49529668|emb|CAG67380.1| |
score: 55.1 |
e-value: 2e-06 |
Identity: 35.63% |
Span: 255bp (39.5%) |
Frame: 3 |
| 23S |
| Match: gi|109672078|ref|ZP_01374320.1| |
score: 54.7 |
e-value: 3e-06 |
Identity: 37.21% |
Span: 258bp (40.0%) |
Frame: 3 |
| hypothetical |
| Match: gi|13422619|gb|AAK23265.1| |
score: 54.7 |
e-value: 3e-06 |
Identity: 41.57% |
Span: 255bp (39.5%) |
Frame: 3 |
| ribosomal |
| Match: gi|85373063|ref|YP_457125.1| |
score: 54.3 |
e-value: 4e-06 |
Identity: 29.57% |
Span: 309bp (47.9%) |
Frame: 3 |
| pseudouridine |
| Match: gi|71851393|gb|AAZ44002.1| |
score: 54.3 |
e-value: 4e-06 |
Identity: 28.12% |
Span: 249bp (38.6%) |
Frame: 3 |
| ribosomal |
| Match: gi|23464749|ref|NP_695352.1| |
score: 54.3 |
e-value: 4e-06 |
Identity: 29.13% |
Span: 351bp (54.4%) |
Frame: 3 |
| gi|23464749|ref|NP_695352.1| widely conserved hypothetical protein in the Rlu family of pseudouridine synthases [Bifi... |
| Match: gi|75853970|ref|ZP_00761701.1| |
score: 53.9 |
e-value: 5e-06 |
Identity: 34.74% |
Span: 255bp (39.5%) |
Frame: 3 |
| COG0564: |
| Match: gi|42632011|ref|ZP_00157549.1| |
score: 53.9 |
e-value: 5e-06 |
Identity: 29.73% |
Span: 327bp (50.7%) |
Frame: 3 |
| gi|42632011|ref|ZP_00157549.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Haemophilus influenzae R2866] |
| Match: gi|28807320|dbj|BAC60585.1| |
score: 53.9 |
e-value: 5e-06 |
Identity: 34.74% |
Span: 255bp (39.5%) |
Frame: 3 |
| pseudouridine |
| Match: gi|91223469|ref|ZP_01258734.1| |
score: 53.9 |
e-value: 5e-06 |
Identity: 34.74% |
Span: 255bp (39.5%) |
Frame: 3 |
| pseudouridine |
| Match: gi|69949554|ref|ZP_00637551.1| |
score: 53.5 |
e-value: 6e-06 |
Identity: 34.74% |
Span: 255bp (39.5%) |
Frame: 3 |
| Pseudouridylate |
| Match: gi|89891472|ref|ZP_01202977.1| |
score: 53.5 |
e-value: 6e-06 |
Identity: 33.67% |
Span: 267bp (41.4%) |
Frame: 3 |
| ribosomal |
| Match: gi|9655343|gb|AAF94050.1| |
score: 53.5 |
e-value: 6e-06 |
Identity: 33.68% |
Span: 255bp (39.5%) |
Frame: 3 |
| pseudouridine |
| Match: gi|75814628|ref|ZP_00745194.1| |
score: 53.5 |
e-value: 6e-06 |
Identity: 33.68% |
Span: 255bp (39.5%) |
Frame: 3 |
| COG0564: |
| Match: gi|51459767|gb|AAU03730.1| |
score: 53.5 |
e-value: 6e-06 |
Identity: 33.64% |
Span: 312bp (48.4%) |
Frame: 3 |
| ribosomal |
| Match: gi|91798101|gb|ABE60240.1| |
score: 53.5 |
e-value: 6e-06 |
Identity: 34.38% |
Span: 267bp (41.4%) |
Frame: 3 |
| pseudouridine |
| Match: gi|14021325|dbj|BAB47938.1| |
score: 53.1 |
e-value: 8e-06 |
Identity: 34.74% |
Span: 273bp (42.3%) |
Frame: 3 |
| ribosomal |
| Match: gi|84711245|ref|ZP_01019547.1| |
score: 53.1 |
e-value: 8e-06 |
Identity: 29.41% |
Span: 297bp (46.0%) |
Frame: 3 |
| Pseudouridine |
| Match: gi|110676009|gb|ABG84996.1| |
score: 53.1 |
e-value: 8e-06 |
Identity: 30.36% |
Span: 306bp (47.4%) |
Frame: 3 |
| pseudouridine |
| Match: gi|84685385|ref|ZP_01013283.1| |
score: 53.1 |
e-value: 8e-06 |
Identity: 36.54% |
Span: 294bp (45.6%) |
Frame: 3 |
| ribosomal |
| Match: gi|82739078|ref|ZP_00901894.1| |
score: 53.1 |
e-value: 8e-06 |
Identity: 26.92% |
Span: 351bp (54.4%) |
Frame: 3 |
| Pseudouridine |
| Match: gi|15828769|ref|NP_326129.1| |
score: 53.1 |
e-value: 8e-06 |
Identity: 27.84% |
Span: 255bp (39.5%) |
Frame: 3 |
| gi|15828769|ref|NP_326129.1| RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D (PSEUDOURIDYLATE SYNTHASE) (URACIL HYDR... |
| Match: gi|84394418|ref|ZP_00993135.1| |
score: 52.8 |
e-value: 1e-05 |
Identity: 34.74% |
Span: 255bp (39.5%) |
Frame: 3 |
| pseudouridine |
| Match: gi|86146894|ref|ZP_01065213.1| |
score: 52.8 |
e-value: 1e-05 |
Identity: 34.74% |
Span: 255bp (39.5%) |
Frame: 3 |
| pseudouridine |
| Match: gi|110684317|gb|ABG87687.1| |
score: 52.8 |
e-value: 1e-05 |
Identity: 31.25% |
Span: 306bp (47.4%) |
Frame: 3 |
| pseudouridine |
| Match: gi|50418114|gb|AAH78405.1| |
score: 52.8 |
e-value: 1e-05 |
Identity: 32.98% |
Span: 255bp (39.5%) |
Frame: 3 |
| Zgc:92006 |
| Match: gi|83644955|ref|YP_433390.1| |
score: 52.8 |
e-value: 1e-05 |
Identity: 30.53% |
Span: 276bp (42.8%) |
Frame: 3 |
| Pseudouridylate |
| Match: gi|75819612|ref|ZP_00749684.1| |
score: 52.8 |
e-value: 1e-05 |
Identity: 33.68% |
Span: 255bp (39.5%) |
Frame: 3 |
| COG0564: |
| Match: gi|82500309|ref|ZP_00885729.1| |
score: 52.8 |
e-value: 1e-05 |
Identity: 30.93% |
Span: 267bp (41.4%) |
Frame: 3 |
| Pseudouridine |
| Match: gi|108461967|gb|ABF87152.1| |
score: 52.8 |
e-value: 1e-05 |
Identity: 33.33% |
Span: 255bp (39.5%) |
Frame: 3 |
| ribosomal |
| Match: gi|39945994|ref|XP_362534.1| |
score: 52.8 |
e-value: 1e-05 |
Identity: 32.99% |
Span: 279bp (43.3%) |
Frame: 3 |
| hypothetical |
| Match: gi|82498948|ref|ZP_00884402.1| |
score: 52.4 |
e-value: 1e-05 |
Identity: 26.8% |
Span: 258bp (40.0%) |
Frame: 3 |
| Pseudouridine |
| Match: gi|46914528|emb|CAG21307.1| |
score: 52.4 |
e-value: 1e-05 |
Identity: 32.61% |
Span: 255bp (39.5%) |
Frame: 3 |
| gi|46914528|emb|CAG21307.1| putative pseudouridine synthase Rlu family protein [Photobacterium profundum] |
| Match: gi|86133476|ref|ZP_01052058.1| |
score: 52.4 |
e-value: 1e-05 |
Identity: 30.39% |
Span: 279bp (43.3%) |
Frame: 3 |
| Pseudouridylate |
| Match: gi|91789509|ref|YP_550461.1| |
score: 52.4 |
e-value: 1e-05 |
Identity: 30.39% |
Span: 297bp (46.0%) |
Frame: 3 |
| Pseudouridine |
| Match: gi|84515394|ref|ZP_01002756.1| |
score: 52.4 |
e-value: 1e-05 |
Identity: 28.87% |
Span: 258bp (40.0%) |
Frame: 3 |
| ribosomal |
| Match: gi|94497617|ref|ZP_01304185.1| |
score: 52.4 |
e-value: 1e-05 |
Identity: 36.56% |
Span: 258bp (40.0%) |
Frame: 3 |
| pseudouridylate |
| Match: gi|85667426|ref|ZP_01029645.1| |
score: 52.4 |
e-value: 1e-05 |
Identity: 31.25% |
Span: 354bp (54.9%) |
Frame: 3 |
| hypothetical |
| Match: gi|59800728|ref|YP_207440.1| |
score: 52.4 |
e-value: 1e-05 |
Identity: 30.17% |
Span: 318bp (49.3%) |
Frame: 3 |
| RluD |
| Match: gi|52698646|ref|ZP_00340054.1| |
score: 52.4 |
e-value: 1e-05 |
Identity: 32.58% |
Span: 258bp (40.0%) |
Frame: 3 |
| gi|52698646|ref|ZP_00340054.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Rickettsia akari str. Hartford] |
| Match: gi|59802102|ref|YP_208814.1| |
score: 52.4 |
e-value: 1e-05 |
Identity: 31.87% |
Span: 264bp (40.9%) |
Frame: 3 |
| RluC |
| Match: gi|89268931|emb|CAJ83700.1| |
score: 52 |
e-value: 2e-05 |
Identity: 33.33% |
Span: 255bp (39.5%) |
Frame: 3 |
| RNA |
| Match: gi|110639847|ref|YP_680057.1| |
score: 52 |
e-value: 2e-05 |
Identity: 31.09% |
Span: 306bp (47.4%) |
Frame: 3 |
| pseudouridylate |
| Match: gi|108463463|gb|ABF88648.1| |
score: 52 |
e-value: 2e-05 |
Identity: 30.17% |
Span: 342bp (53.0%) |
Frame: 3 |
| pseudouridine |
| Match: gi|56416692|ref|YP_153766.1| |
score: 52 |
e-value: 2e-05 |
Identity: 32.58% |
Span: 258bp (40.0%) |
Frame: 3 |
| gi|56416692|ref|YP_153766.1| ribosomal large subunit pseudouridine synthase [Anaplasma marginale str. St. Maries] >gi... |
| Match: gi|91769359|ref|ZP_01271193.1| |
score: 52 |
e-value: 2e-05 |
Identity: 35.87% |
Span: 255bp (39.5%) |
Frame: 3 |
| Pseudouridylate |
| Match: gi|26553465|ref|NP_757399.1| |
score: 52 |
e-value: 2e-05 |
Identity: 32.63% |
Span: 258bp (40.0%) |
Frame: 3 |
| gi|26553465|ref|NP_757399.1| pseudouridine synthase [Mycoplasma penetrans] gi|26453471|dbj|BAC43803.1| pseudouridine ... |
| Match: gi|109898450|ref|YP_661705.1| |
score: 52 |
e-value: 2e-05 |
Identity: 35.48% |
Span: 270bp (41.9%) |
Frame: 3 |
| pseudouridine |
| Match: gi|67004948|gb|AAY61874.1| |
score: 52 |
e-value: 2e-05 |
Identity: 33.71% |
Span: 258bp (40.0%) |
Frame: 3 |
| gi|67004948|gb|AAY61874.1| Ribosomal large subunit pseudouridine synthase [Rickettsia felis URRWXCal2] >gi|67459415|r... |
| Match: gi|77814790|ref|ZP_00814043.1| |
score: 52 |
e-value: 2e-05 |
Identity: 35.87% |
Span: 255bp (39.5%) |
Frame: 3 |
| Pseudouridylate |
| Match: gi|88658198|ref|YP_507572.1| |
score: 52 |
e-value: 2e-05 |
Identity: 29.21% |
Span: 258bp (40.0%) |
Frame: 3 |
| ribosomal |
| Match: gi|86357851|ref|YP_469743.1| |
score: 52 |
e-value: 2e-05 |
Identity: 34.74% |
Span: 273bp (42.3%) |
Frame: 3 |
| pseudouridylate |
| Match: gi|60492029|emb|CAH06791.1| |
score: 51.6 |
e-value: 2e-05 |
Identity: 28.12% |
Span: 279bp (43.3%) |
Frame: 3 |
| putative |
| Match: gi|110669704|ref|YP_666261.1| |
score: 51.6 |
e-value: 2e-05 |
Identity: 33.33% |
Span: 288bp (44.7%) |
Frame: 3 |
| ribosomal |
| Match: gi|90413524|ref|ZP_01221515.1| |
score: 51.6 |
e-value: 2e-05 |
Identity: 32.61% |
Span: 255bp (39.5%) |
Frame: 3 |
| putative |
| Match: gi|89257067|ref|YP_514429.1| |
score: 51.6 |
e-value: 2e-05 |
Identity: 33.33% |
Span: 288bp (44.7%) |
Frame: 3 |
| ribosomal |
| Match: gi|52215298|dbj|BAD47891.1| |
score: 51.6 |
e-value: 2e-05 |
Identity: 28.12% |
Span: 279bp (43.3%) |
Frame: 3 |
| ribosomal |
| Match: gi|54114079|gb|AAV29673.1| |
score: 51.6 |
e-value: 2e-05 |
Identity: 33.33% |
Span: 288bp (44.7%) |
Frame: 3 |
| NT02FT1763 |
| Match: gi|78363286|gb|ABB41251.1| |
score: 51.6 |
e-value: 2e-05 |
Identity: 37.5% |
Span: 255bp (39.5%) |
Frame: 3 |
| Pseudouridine |
|
| 150 lower scoring hits censored -- only 100 best hits are stored. |
