| genbank/nr [blastx] | Showing best 45 hits recorded |
| Match: gi|15239067|ref|NP_199096.1| |
score: 86.66 |
e-value: 4.4e-16 |
Identity: 45.38% |
Span: 390bp (52.6%) |
Frame: 3 |
| U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] >gi4257354... |
| Match: gi|15723293|gb|AAL06332.1| |
score: 83.19 |
e-value: 4.9e-15 |
Identity: 44.62% |
Span: 390bp (52.6%) |
Frame: 3 |
| gi|15723293|gb|AAL06332.1| U2 auxiliary factor small subunit [Arabidopsis thaliana] |
| Match: gi|13278055|gb|AAH03883.1| |
score: 80.49 |
e-value: 3.2e-14 |
Identity: 97.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|13278055|gb|AAH03883.1| Similar to RIKEN cDNA 2010107D16 gene [Mus musculus] |
| Match: gi|3850818|emb|CAA77133.1| |
score: 80.11 |
e-value: 4.2e-14 |
Identity: 45.19% |
Span: 387bp (52.2%) |
Frame: 3 |
| gi|3850818|emb|CAA77133.1| U2 snRNP auxiliary factor, small subunit [Oryza sativa] |
| Match: gi|15217666|ref|NP_174086.1| |
score: 72.02 |
e-value: 1.1e-11 |
Identity: 83.33% |
Span: 108bp (14.6%) |
Frame: 3 |
| ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] >gi75336... |
| Match: gi|3850819|emb|CAA77134.1| |
score: 69.32 |
e-value: 7.3e-11 |
Identity: 80% |
Span: 105bp (14.2%) |
Frame: 3 |
| U2 snRNP auxiliary factor, small subunit [Oryza sativa] |
| Match: gi|3850816|emb|CAA77132.1| |
score: 68.94 |
e-value: 9.6e-11 |
Identity: 80% |
Span: 105bp (14.2%) |
Frame: 3 |
| U2 snRNP auxiliary factor, small subunit [Oryza sativa] |
| Match: gi|15723291|gb|AAL06331.1| |
score: 65.85 |
e-value: 8.1e-10 |
Identity: 77.78% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|15723291|gb|AAL06331.1| U2 auxiliary factor small subunit [Arabidopsis thaliana] |
| Match: gi|47226948|emb|CAG05840.1| |
score: 62.39 |
e-value: 9e-09 |
Identity: 72.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|47226948|emb|CAG05840.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|47220971|emb|CAF98200.1| |
score: 62.39 |
e-value: 9e-09 |
Identity: 72.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|47220971|emb|CAF98200.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|13235096|emb|CAC33541.1| |
score: 62.39 |
e-value: 9e-09 |
Identity: 72.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|13235096|emb|CAC33541.1| U2snRNP auxiliary factor small subunit [Gallus gallus] gi|13235098|emb|CAC33542.1| U2snRN... |
| Match: gi|38084025|ref|XP_128982.2| |
score: 62.39 |
e-value: 9e-09 |
Identity: 72.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|38084025|ref|XP_128982.2| similar to Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 ... |
| Match: gi|12805423|gb|AAH02184.1| |
score: 62.39 |
e-value: 9e-09 |
Identity: 72.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|12805423|gb|AAH02184.1| U2af1 protein [Mus musculus] |
| Match: gi|29126228|ref|NP_803432.1| |
score: 62.39 |
e-value: 9e-09 |
Identity: 72.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|29126228|ref|NP_803432.1| U2(RNU2) small nuclear RNA auxillary factor 1 [Danio rerio] gi|21105405|gb|AAM34646.1| U... |
| Match: gi|31455228|gb|AAH05915.1| |
score: 62.39 |
e-value: 9e-09 |
Identity: 72.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|31455228|gb|AAH05915.1| U2AF1 protein [Homo sapiens] |
| Match: gi|33341702|gb|AAQ15222.1| |
score: 62.39 |
e-value: 9e-09 |
Identity: 72.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|33341702|gb|AAQ15222.1| FP793 [Homo sapiens] |
| Match: gi|46911414|emb|CAF29556.1| |
score: 62.39 |
e-value: 9e-09 |
Identity: 72.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|46911414|emb|CAF29556.1| U2 snRNP auxiliary factor small subunit [Homo sapiens] |
| Match: gi|5803207|ref|NP_006749.1| |
score: 62.39 |
e-value: 9e-09 |
Identity: 72.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|5803207|ref|NP_006749.1| U2 small nuclear RNA auxillary factor 1; U2 snRNP auxiliary factor small subunit; splicin... |
| Match: gi|4204470|gb|AAD13394.1| |
score: 62.39 |
e-value: 9e-09 |
Identity: 72.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|4204470|gb|AAD13394.1| splicing factor U2AF35 [Takifugu rubripes] |
| Match: gi|17368837|sp|Q9D883|U2AG_MOUSE |
score: 62.39 |
e-value: 9e-09 |
Identity: 72.22% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|17368837|sp|Q9D883|U2AG_MOUSE Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 snRNP a... |
| Match: gi|25072205|ref|NP_739566.1| |
score: 59.31 |
e-value: 7.6e-08 |
Identity: 70.59% |
Span: 102bp (13.8%) |
Frame: 3 |
| gi|25072205|ref|NP_739566.1| U2 auxiliary factor 26; auxiliary factor 26 [Mus musculus] gi|34855699|ref|XP_341829.1| ... |
| Match: gi|17530980|ref|NP_077149.1| |
score: 59.31 |
e-value: 7.6e-08 |
Identity: 73.53% |
Span: 102bp (13.8%) |
Frame: 3 |
| gi|17530980|ref|NP_077149.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1; U2 small nuclear ribonucle... |
| Match: gi|33086652|gb|AAP92638.1| |
score: 59.31 |
e-value: 7.6e-08 |
Identity: 70.59% |
Span: 102bp (13.8%) |
Frame: 3 |
| gi|33086652|gb|AAP92638.1| Cb2-806 [Rattus norvegicus] |
| Match: gi|17137284|ref|NP_477208.1| |
score: 57 |
e-value: 3.8e-07 |
Identity: 50.91% |
Span: 165bp (22.3%) |
Frame: 3 |
| gi|17137284|ref|NP_477208.1| U2 small nuclear riboprotein auxiliary factor 38 CG3582-PA [Drosophila melanogaster] gi|... |
| Match: gi|7512051|pir||JC6125 |
score: 57 |
e-value: 3.8e-07 |
Identity: 50.91% |
Span: 165bp (22.3%) |
Frame: 3 |
| gi|7512051|pir||JC6125 U2 small nuclear ribonucleoprotein auxiliary factor small chain - fruit fly (Drosophila melano... |
| Match: gi|31205983|ref|XP_311943.1| |
score: 56.61 |
e-value: 4.9e-07 |
Identity: 66.67% |
Span: 108bp (14.6%) |
Frame: 3 |
| gi|31205983|ref|XP_311943.1| ENSANGP00000011066 [Anopheles gambiae] gi|21295970|gb|EAA08115.1| ENSANGP00000011066 [An... |
| Match: gi|42659754|ref|XP_377230.1| |
score: 55.07 |
e-value: 1.4e-06 |
Identity: 65.71% |
Span: 105bp (14.2%) |
Frame: 3 |
| gi|42659754|ref|XP_377230.1| similar to U2af1 protein [Homo sapiens] |
| Match: gi|23508391|ref|NP_701060.1| |
score: 52.37 |
e-value: 9.3e-06 |
Identity: 58.82% |
Span: 102bp (13.8%) |
Frame: 3 |
| gi|23508391|ref|NP_701060.1| U2 snRNP auxiliary factor, small subunit, putative [Plasmodium falciparum 3D7] gi|234961... |
| Match: gi|49074800|ref|XP_401508.1| |
score: 51.99 |
e-value: 1.2e-05 |
Identity: 63.64% |
Span: 99bp (13.4%) |
Frame: 3 |
| gi|49074800|ref|XP_401508.1| hypothetical protein UM03893.1 [Ustilago maydis 521] >gi|46099833|gb|EAK85066.1| hypothe... |
| Match: gi|39585212|emb|CAE57455.1| |
score: 51.22 |
e-value: 2.1e-05 |
Identity: 58.82% |
Span: 102bp (13.8%) |
Frame: 3 |
| gi|39585212|emb|CAE57455.1| Hypothetical protein CBG00419 [Caenorhabditis briggsae] |
| Match: gi|17544466|ref|NP_503036.1| |
score: 51.22 |
e-value: 2.1e-05 |
Identity: 58.82% |
Span: 102bp (13.8%) |
Frame: 3 |
| gi|17544466|ref|NP_503036.1| auxiliary factor (30.9 kD) (4S62) [Caenorhabditis elegans] gi|7509376|pir||T31503 hypoth... |
| Match: gi|46228867|gb|EAK89737.1| |
score: 50.45 |
e-value: 3.5e-05 |
Identity: 55.88% |
Span: 102bp (13.8%) |
Frame: 3 |
| gi|46228867|gb|EAK89737.1| U2AG splicing factor U2AF U2snRNP auxilliary factor small subunit CCCh+RRM+CCCh-like [Cryp... |
| Match: gi|23479849|gb|EAA16571.1| |
score: 48.91 |
e-value: 0.0001 |
Identity: 54.55% |
Span: 99bp (13.4%) |
Frame: 3 |
| gi|23479849|gb|EAA16571.1| similar to RIKEN cDNA 2010107D16 gene [Plasmodium yoelii yoelii] |
| Match: gi|13278055|gb|AAH03883.1| |
score: 48.91 |
e-value: 0.0001 |
Identity: 40.26% |
Span: 219bp (29.6%) |
Frame: 3 |
| gi|13278055|gb|AAH03883.1| Similar to RIKEN cDNA 2010107D16 gene [Mus musculus] |
| Match: gi|15217666|ref|NP_174086.1| |
score: 47.75 |
e-value: 0.00023 |
Identity: 44.26% |
Span: 171bp (23.1%) |
Frame: 3 |
| ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] >gi75336... |
| Match: gi|15723291|gb|AAL06331.1| |
score: 47.75 |
e-value: 0.00023 |
Identity: 44.26% |
Span: 171bp (23.1%) |
Frame: 3 |
| gi|15723291|gb|AAL06331.1| U2 auxiliary factor small subunit [Arabidopsis thaliana] |
| Match: gi|15239067|ref|NP_199096.1| |
score: 46.59 |
e-value: 0.00051 |
Identity: 44.07% |
Span: 165bp (22.3%) |
Frame: 3 |
| U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] >gi4257354... |
| Match: gi|3850818|emb|CAA77133.1| |
score: 46.21 |
e-value: 0.00067 |
Identity: 46.94% |
Span: 147bp (19.8%) |
Frame: 3 |
| gi|3850818|emb|CAA77133.1| U2 snRNP auxiliary factor, small subunit [Oryza sativa] |
| Match: gi|15723293|gb|AAL06332.1| |
score: 45.82 |
e-value: 0.00087 |
Identity: 44.07% |
Span: 165bp (22.3%) |
Frame: 3 |
| gi|15723293|gb|AAL06332.1| U2 auxiliary factor small subunit [Arabidopsis thaliana] |
| Match: gi|19115857|ref|NP_594945.1| |
score: 45.82 |
e-value: 0.00087 |
Identity: 60.61% |
Span: 99bp (13.4%) |
Frame: 3 |
| gi|19115857|ref|NP_594945.1| splicing factor u2af 35 kd subunit [Schizosaccharomyces pombe] gi|6136086|sp|Q09176|U2AG... |
| Match: gi|3850816|emb|CAA77132.1| |
score: 43.51 |
e-value: 0.004 |
Identity: 53.66% |
Span: 114bp (15.4%) |
Frame: 3 |
| U2 snRNP auxiliary factor, small subunit [Oryza sativa] |
| Match: gi|13278055|gb|AAH03883.1| |
score: 43.51 |
e-value: 0.004 |
Identity: 66.67% |
Span: 81bp (10.9%) |
Frame: 3 |
| gi|13278055|gb|AAH03883.1| Similar to RIKEN cDNA 2010107D16 gene [Mus musculus] |
| Match: gi|9837383|gb|AAG00553.1| |
score: 42.36 |
e-value: 0.01 |
Identity: 30.85% |
Span: 267bp (36.0%) |
Frame: 3 |
| gi|9837383|gb|AAG00553.1| retinitis pigmentosa GTPase regulator [Bos taurus] |
| Match: gi|15217666|ref|NP_174086.1| |
score: 42.36 |
e-value: 0.01 |
Identity: 75% |
Span: 72bp (9.7%) |
Frame: 3 |
| ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] >gi75336... |
| Match: gi|15723291|gb|AAL06331.1| |
score: 42.36 |
e-value: 0.01 |
Identity: 75% |
Span: 72bp (9.7%) |
Frame: 3 |
| gi|15723291|gb|AAL06331.1| U2 auxiliary factor small subunit [Arabidopsis thaliana] |
|
| arabidopsis/peptide [blastx] | Showing best 8 hits recorded |
| Match: At5g42820.1 |
score: 86.66 |
e-value: 1.3e-17 |
Identity: 45.38% |
Span: 390bp (52.6%) |
Frame: 3 |
| At5g42820.1 68412.m04707 splicing factor U2AF small subunit, putative U2 snRNP auxiliary factor, small subunit |
| Match: At5g42820.2 |
score: 86.66 |
e-value: 1.3e-17 |
Identity: 45.38% |
Span: 390bp (52.6%) |
Frame: 3 |
| At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit, putative strong similarity to U2 snRNP auxiliary fa... |
| Match: At1g27650.1 |
score: 72.02 |
e-value: 3.2e-13 |
Identity: 83.33% |
Span: 108bp (14.6%) |
Frame: 3 |
| At1g27650.1 68408.m03065 splicing factor U2AF small subunit, putative Strong similarity to gb|Y18349 U2 snRNP auxilia... |
| Match: At1g27650.1 |
score: 47.75 |
e-value: 6.5e-06 |
Identity: 44.26% |
Span: 171bp (23.1%) |
Frame: 3 |
| At1g27650.1 68408.m03065 splicing factor U2AF small subunit, putative Strong similarity to gb|Y18349 U2 snRNP auxilia... |
| Match: At5g42820.1 |
score: 46.59 |
e-value: 1.4e-05 |
Identity: 44.07% |
Span: 165bp (22.3%) |
Frame: 3 |
| At5g42820.1 68412.m04707 splicing factor U2AF small subunit, putative U2 snRNP auxiliary factor, small subunit |
| Match: At5g42820.2 |
score: 46.59 |
e-value: 1.4e-05 |
Identity: 44.07% |
Span: 165bp (22.3%) |
Frame: 3 |
| At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit, putative strong similarity to U2 snRNP auxiliary fa... |
| Match: At1g27650.1 |
score: 42.36 |
e-value: 0.00027 |
Identity: 75% |
Span: 72bp (9.7%) |
Frame: 3 |
| At1g27650.1 68408.m03065 splicing factor U2AF small subunit, putative Strong similarity to gb|Y18349 U2 snRNP auxilia... |
| Match: At3g26560.1 |
score: 38.51 |
e-value: 0.004 |
Identity: 29.33% |
Span: 225bp (30.4%) |
Frame: 3 |
| At3g26560.1 68410.m03036 ATP-dependent RNA helicase, putative similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA h... |
|
