| arabidopsis/peptide [blastx] | Showing best 22 hits recorded |
| Match: At1G57800.1 |
score: 59.7 |
e-value: 2e-09 |
Identity: 47.83% |
Span: 177bp (21.0%) |
Frame: 2 |
| Symbols: VIM5 | zinc finger (C3HC4-type RING finger) family protein | chr1:21412412-21415948 REVERSE |
| Match: At1G66040.1 |
score: 59.3 |
e-value: 3e-09 |
Identity: 47.83% |
Span: 177bp (21.0%) |
Frame: 2 |
| Symbols: VIM4 | zinc finger (C3HC4-type RING finger) family protein | chr1:24587483-24590344 REVERSE |
| Match: At1G66050.1 |
score: 59.3 |
e-value: 3e-09 |
Identity: 47.83% |
Span: 177bp (21.0%) |
Frame: 2 |
| Symbols: VIM2 | zinc finger (C3HC4-type RING finger) family protein | chr1:24593197-24596279 FORWARD |
| Match: At1G57820.2 |
score: 58.5 |
e-value: 5e-09 |
Identity: 44% |
Span: 195bp (23.2%) |
Frame: 2 |
| Symbols: VIM1 | VIM1 (VARIANT IN METHYLATION 1); DNA binding | chr1:21418007-21421567 REVERSE |
| Match: At4G08590.1 |
score: 58.5 |
e-value: 5e-09 |
Identity: 46.75% |
Span: 195bp (23.2%) |
Frame: 2 |
| zinc finger (C3HC4-type RING finger) family protein | chr4:5464082-5466632 REVERSE |
| Match: At5G39550.1 |
score: 58.2 |
e-value: 6e-09 |
Identity: 46.38% |
Span: 177bp (21.0%) |
Frame: 2 |
| Symbols: VIM3 | zinc finger (C3HC4-type RING finger) family protein | chr5:15854636-15857731 REVERSE |
| Match: At1G57820.1 |
score: 56.6 |
e-value: 2e-08 |
Identity: 46.38% |
Span: 177bp (21.0%) |
Frame: 2 |
| Symbols: VIM1 | VIM1 (VARIANT IN METHYLATION 1); DNA binding | chr1:21418007-21421567 REVERSE |
| Match: At1G57800.1 |
score: 56.2 |
e-value: 2e-08 |
Identity: 51.02% |
Span: 147bp (17.5%) |
Frame: 2 |
| Symbols: VIM5 | zinc finger (C3HC4-type RING finger) family protein | chr1:21412412-21415948 REVERSE |
| Match: At1G57820.2 |
score: 50.1 |
e-value: 2e-06 |
Identity: 44.9% |
Span: 147bp (17.5%) |
Frame: 2 |
| Symbols: VIM1 | VIM1 (VARIANT IN METHYLATION 1); DNA binding | chr1:21418007-21421567 REVERSE |
| Match: At1G66050.1 |
score: 50.1 |
e-value: 7e-07 |
Identity: 45.83% |
Span: 144bp (17.1%) |
Frame: 2 |
| Symbols: VIM2 | zinc finger (C3HC4-type RING finger) family protein | chr1:24593197-24596279 FORWARD |
| Match: At1G57820.1 |
score: 50.1 |
e-value: 2e-06 |
Identity: 44.9% |
Span: 147bp (17.5%) |
Frame: 2 |
| Symbols: VIM1 | VIM1 (VARIANT IN METHYLATION 1); DNA binding | chr1:21418007-21421567 REVERSE |
| Match: At1G66040.1 |
score: 50.1 |
e-value: 7e-07 |
Identity: 45.83% |
Span: 144bp (17.1%) |
Frame: 2 |
| Symbols: VIM4 | zinc finger (C3HC4-type RING finger) family protein | chr1:24587483-24590344 REVERSE |
| Match: At5G39550.1 |
score: 50.1 |
e-value: 2e-06 |
Identity: 45.83% |
Span: 144bp (17.1%) |
Frame: 2 |
| Symbols: VIM3 | zinc finger (C3HC4-type RING finger) family protein | chr5:15854636-15857731 REVERSE |
| Match: At1G66040.1 |
score: 47 |
e-value: 1e-05 |
Identity: 38.67% |
Span: 183bp (21.7%) |
Frame: 2 |
| Symbols: VIM4 | zinc finger (C3HC4-type RING finger) family protein | chr1:24587483-24590344 REVERSE |
| Match: At1G66050.1 |
score: 47 |
e-value: 1e-05 |
Identity: 38.67% |
Span: 183bp (21.7%) |
Frame: 2 |
| Symbols: VIM2 | zinc finger (C3HC4-type RING finger) family protein | chr1:24593197-24596279 FORWARD |
| Match: At5G39550.1 |
score: 46.2 |
e-value: 2e-05 |
Identity: 63.64% |
Span: 96bp (11.4%) |
Frame: 2 |
| Symbols: VIM3 | zinc finger (C3HC4-type RING finger) family protein | chr5:15854636-15857731 REVERSE |
| Match: At1G57820.2 |
score: 45.8 |
e-value: 3e-05 |
Identity: 67.86% |
Span: 84bp (10.0%) |
Frame: 2 |
| Symbols: VIM1 | VIM1 (VARIANT IN METHYLATION 1); DNA binding | chr1:21418007-21421567 REVERSE |
| Match: At1G57820.1 |
score: 45.8 |
e-value: 3e-05 |
Identity: 67.86% |
Span: 84bp (10.0%) |
Frame: 2 |
| Symbols: VIM1 | VIM1 (VARIANT IN METHYLATION 1); DNA binding | chr1:21418007-21421567 REVERSE |
| Match: At4G08590.1 |
score: 45.1 |
e-value: 5e-05 |
Identity: 47.92% |
Span: 144bp (17.1%) |
Frame: 2 |
| zinc finger (C3HC4-type RING finger) family protein | chr4:5464082-5466632 REVERSE |
| Match: At1G57800.1 |
score: 43.9 |
e-value: 0.0001 |
Identity: 56.76% |
Span: 111bp (13.2%) |
Frame: 2 |
| Symbols: VIM5 | zinc finger (C3HC4-type RING finger) family protein | chr1:21412412-21415948 REVERSE |
| Match: At1G66050.1 |
score: 20.8 |
e-value: 7e-07 |
Identity: 72.73% |
Span: 33bp (3.9%) |
Frame: 1 |
| Symbols: VIM2 | zinc finger (C3HC4-type RING finger) family protein | chr1:24593197-24596279 FORWARD |
| Match: At1G66040.1 |
score: 20.8 |
e-value: 7e-07 |
Identity: 72.73% |
Span: 33bp (3.9%) |
Frame: 1 |
| Symbols: VIM4 | zinc finger (C3HC4-type RING finger) family protein | chr1:24587483-24590344 REVERSE |
|
| 4 lower scoring hits censored -- only 22 best hits are stored. |
| genbank/nr [blastx] | Showing best 37 hits recorded |
| Match: gi|11079520|gb|AAG29230.1| |
score: 62.8 |
e-value: 2e-08 |
Identity: 47.22% |
Span: 186bp (22.1%) |
Frame: 2 |
| hypothetical |
| Match: gi|42562797|ref|NP_176091.2| |
score: 59.7 |
e-value: 2e-07 |
Identity: 47.83% |
Span: 177bp (21.0%) |
Frame: 2 |
| gi|42562797|ref|NP_176091.2| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] |
| Match: gi|34365759|gb|AAQ65191.1| |
score: 59.3 |
e-value: 2e-07 |
Identity: 47.83% |
Span: 177bp (21.0%) |
Frame: 2 |
| gi|34365759|gb|AAQ65191.1| At1g66050 [Arabidopsis thaliana] |
| Match: gi|15218910|ref|NP_176778.1| |
score: 59.3 |
e-value: 2e-07 |
Identity: 47.83% |
Span: 177bp (21.0%) |
Frame: 2 |
| VIM4 (VARIANT IN METHYLATION 4); protein binding / zinc ion binding [Arabidopsis thaliana] >gi12322600|gb|AAG51294.1|... |
| Match: gi|42562989|ref|NP_176779.2| |
score: 59.3 |
e-value: 2e-07 |
Identity: 47.83% |
Span: 177bp (21.0%) |
Frame: 2 |
| VIM2 (VARIANT IN METHYLATION 2); protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] ... |
| Match: gi|2565009|gb|AAB81879.1| |
score: 58.5 |
e-value: 3e-07 |
Identity: 48.65% |
Span: 186bp (22.1%) |
Frame: 2 |
| putative |
| Match: gi|42566339|ref|NP_192599.2| |
score: 58.5 |
e-value: 3e-07 |
Identity: 46.75% |
Span: 195bp (23.2%) |
Frame: 2 |
| gi|42566339|ref|NP_192599.2| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] |
| Match: gi|3377817|gb|AAC28190.1| |
score: 58.5 |
e-value: 3e-07 |
Identity: 46.75% |
Span: 195bp (23.2%) |
Frame: 2 |
| contains |
| Match: gi|42571909|ref|NP_974045.1| |
score: 58.5 |
e-value: 3e-07 |
Identity: 44% |
Span: 195bp (23.2%) |
Frame: 2 |
| VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone b... |
| Match: gi|51971753|dbj|BAD44541.1| |
score: 58.2 |
e-value: 4e-07 |
Identity: 46.38% |
Span: 177bp (21.0%) |
Frame: 2 |
| zinc finger-like protein [Arabidopsis thaliana] |
| Match: gi|15241791|ref|NP_198771.1| |
score: 58.2 |
e-value: 4e-07 |
Identity: 46.38% |
Span: 177bp (21.0%) |
Frame: 2 |
| VIM3 (VARIANT IN METHYLATION 3); methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / protein binding /... |
| Match: gi|63147378|gb|AAY34162.1| |
score: 57.4 |
e-value: 7e-07 |
Identity: 48.61% |
Span: 180bp (21.4%) |
Frame: 2 |
| At4g08590 |
| Match: gi|11079528|gb|AAG29238.1| |
score: 56.6 |
e-value: 1e-06 |
Identity: 46.38% |
Span: 177bp (21.0%) |
Frame: 2 |
| transcription |
| Match: gi|22330295|ref|NP_176092.2| |
score: 56.6 |
e-value: 1e-06 |
Identity: 46.38% |
Span: 177bp (21.0%) |
Frame: 2 |
| VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone b... |
| Match: gi|42562797|ref|NP_176091.2| |
score: 56.2 |
e-value: 2e-06 |
Identity: 51.02% |
Span: 147bp (17.5%) |
Frame: 2 |
| gi|42562797|ref|NP_176091.2| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] |
| Match: gi|11079520|gb|AAG29230.1| |
score: 56.2 |
e-value: 2e-06 |
Identity: 51.02% |
Span: 147bp (17.5%) |
Frame: 2 |
| hypothetical |
| Match: gi|46359889|gb|AAS88821.1| |
score: 55.1 |
e-value: 4e-06 |
Identity: 44.93% |
Span: 177bp (21.0%) |
Frame: 2 |
| gi|46359889|gb|AAS88821.1| putative zinc finger protein [Oryza sativa (japonica cultivar-group)] |
| Match: gi|50949031|ref|XP_493873.1| |
score: 55.1 |
e-value: 4e-06 |
Identity: 44.93% |
Span: 177bp (21.0%) |
Frame: 2 |
| similar |
| Match: gi|50949031|ref|XP_493873.1| |
score: 53.9 |
e-value: 8e-06 |
Identity: 51.02% |
Span: 147bp (17.5%) |
Frame: 2 |
| similar |
| Match: gi|46359889|gb|AAS88821.1| |
score: 53.9 |
e-value: 8e-06 |
Identity: 51.02% |
Span: 147bp (17.5%) |
Frame: 2 |
| gi|46359889|gb|AAS88821.1| putative zinc finger protein [Oryza sativa (japonica cultivar-group)] |
| Match: gi|22775495|dbj|BAC11916.1| |
score: 53.1 |
e-value: 1e-05 |
Identity: 42.86% |
Span: 180bp (21.4%) |
Frame: 2 |
| gi|22775495|dbj|BAC11916.1| similar to A. thaliana AT4g08590 [Arabis gemmifera] |
| Match: gi|22775495|dbj|BAC11916.1| |
score: 50.4 |
e-value: 9e-05 |
Identity: 47.92% |
Span: 144bp (17.1%) |
Frame: 2 |
| gi|22775495|dbj|BAC11916.1| similar to A. thaliana AT4g08590 [Arabis gemmifera] |
| Match: gi|42562989|ref|NP_176779.2| |
score: 50.1 |
e-value: 5e-05 |
Identity: 45.83% |
Span: 144bp (17.1%) |
Frame: 2 |
| VIM2 (VARIANT IN METHYLATION 2); protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] ... |
| Match: gi|11079528|gb|AAG29238.1| |
score: 50.1 |
e-value: 0.0001 |
Identity: 44.9% |
Span: 147bp (17.5%) |
Frame: 2 |
| transcription |
| Match: gi|34365759|gb|AAQ65191.1| |
score: 50.1 |
e-value: 5e-05 |
Identity: 45.83% |
Span: 144bp (17.1%) |
Frame: 2 |
| gi|34365759|gb|AAQ65191.1| At1g66050 [Arabidopsis thaliana] |
| Match: gi|22330295|ref|NP_176092.2| |
score: 50.1 |
e-value: 0.0001 |
Identity: 44.9% |
Span: 147bp (17.5%) |
Frame: 2 |
| VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone b... |
| Match: gi|51971753|dbj|BAD44541.1| |
score: 50.1 |
e-value: 0.0001 |
Identity: 45.83% |
Span: 144bp (17.1%) |
Frame: 2 |
| zinc finger-like protein [Arabidopsis thaliana] |
| Match: gi|15218910|ref|NP_176778.1| |
score: 50.1 |
e-value: 5e-05 |
Identity: 45.83% |
Span: 144bp (17.1%) |
Frame: 2 |
| VIM4 (VARIANT IN METHYLATION 4); protein binding / zinc ion binding [Arabidopsis thaliana] >gi12322600|gb|AAG51294.1|... |
| Match: gi|42571909|ref|NP_974045.1| |
score: 50.1 |
e-value: 0.0001 |
Identity: 44.9% |
Span: 147bp (17.5%) |
Frame: 2 |
| VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone b... |
| Match: gi|15241791|ref|NP_198771.1| |
score: 50.1 |
e-value: 0.0001 |
Identity: 45.83% |
Span: 144bp (17.1%) |
Frame: 2 |
| VIM3 (VARIANT IN METHYLATION 3); methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / protein binding /... |
| Match: gi|12322611|gb|AAG51305.1| |
score: 48.5 |
e-value: 3e-10 |
Identity: 82.61% |
Span: 69bp (8.2%) |
Frame: 2 |
| RING |
| Match: gi|46359889|gb|AAS88821.1| |
score: 47 |
e-value: 1e-05 |
Identity: 66.67% |
Span: 90bp (10.7%) |
Frame: 2 |
| gi|46359889|gb|AAS88821.1| putative zinc finger protein [Oryza sativa (japonica cultivar-group)] |
| Match: gi|12322611|gb|AAG51305.1| |
score: 40 |
e-value: 3e-10 |
Identity: 80.95% |
Span: 63bp (7.5%) |
Frame: 1 |
| RING |
| Match: gi|46359889|gb|AAS88821.1| |
score: 26.2 |
e-value: 1e-05 |
Identity: 29.47% |
Span: 285bp (33.8%) |
Frame: 1 |
| gi|46359889|gb|AAS88821.1| putative zinc finger protein [Oryza sativa (japonica cultivar-group)] |
| Match: gi|42562989|ref|NP_176779.2| |
score: 20.8 |
e-value: 5e-05 |
Identity: 72.73% |
Span: 33bp (3.9%) |
Frame: 1 |
| VIM2 (VARIANT IN METHYLATION 2); protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] ... |
| Match: gi|15218910|ref|NP_176778.1| |
score: 20.8 |
e-value: 5e-05 |
Identity: 72.73% |
Span: 33bp (3.9%) |
Frame: 1 |
| VIM4 (VARIANT IN METHYLATION 4); protein binding / zinc ion binding [Arabidopsis thaliana] >gi12322600|gb|AAG51294.1|... |
| Match: gi|34365759|gb|AAQ65191.1| |
score: 20.8 |
e-value: 5e-05 |
Identity: 72.73% |
Span: 33bp (3.9%) |
Frame: 1 |
| gi|34365759|gb|AAQ65191.1| At1g66050 [Arabidopsis thaliana] |
|
| 67 lower scoring hits censored -- only 37 best hits are stored. |
