| genbank/nr [blastx] | Showing best 25 hits recorded |
| Match: gi|67515354|gb|AAY68206.1| |
score: 428 |
e-value: 4e-118 |
Identity: 91.37% |
Span: 765bp (87.6%) |
Frame: 2 |
| RNA polymerase IV second largest subunit [Solanum lycopersicum] |
| Match: gi|67515338|gb|AAY68198.1| |
score: 397 |
e-value: 7e-119 |
Identity: 81.85% |
Span: 765bp (87.6%) |
Frame: 2 |
| RNA polymerase IV second largest subunit [Rhododendron macrophyllum] |
| Match: gi|224141967|ref|XP_002324332.1| |
score: 384 |
e-value: 2e-114 |
Identity: 81.18% |
Span: 765bp (87.6%) |
Frame: 2 |
| predicted protein [Populus trichocarpa] >gi222865766|gb|EEF02897.1| predicted protein [Populus trichocarpa] |
| Match: gi|255548744|ref|XP_002515428.1| |
score: 380 |
e-value: 1e-113 |
Identity: 80.39% |
Span: 765bp (87.6%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit, putative [Ricinus communis] >gi223545372|gb|EEF46877.1| DNA-directed RNA polymer... |
| Match: gi|270231812|emb|CBI21137.1| |
score: 378 |
e-value: 3e-112 |
Identity: 79.22% |
Span: 765bp (87.6%) |
Frame: 2 |
| unnamed protein product [Vitis vinifera] |
| Match: gi|225430474|ref|XP_002283296.1| |
score: 378 |
e-value: 3e-112 |
Identity: 79.22% |
Span: 765bp (87.6%) |
Frame: 2 |
| PREDICTED: hypothetical protein [Vitis vinifera] |
| Match: gi|67515342|gb|AAY68200.1| |
score: 367 |
e-value: 7e-110 |
Identity: 78.43% |
Span: 765bp (87.6%) |
Frame: 2 |
| RNA polymerase IV second largest subunit [Antirrhinum majus] |
| Match: gi|222629653|gb|EEE61785.1| |
score: 349 |
e-value: 6e-103 |
Identity: 74.3% |
Span: 747bp (85.6%) |
Frame: 2 |
| hypothetical protein OsJ_16357 [Oryza sativa Japonica Group] |
| Match: gi|38344903|emb|CAD41847.2| |
score: 349 |
e-value: 6e-103 |
Identity: 74.3% |
Span: 747bp (85.6%) |
Frame: 2 |
| OSJNBb0079B02.6 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|218195684|gb|EEC78111.1| |
score: 349 |
e-value: 6e-103 |
Identity: 74.3% |
Span: 747bp (85.6%) |
Frame: 2 |
| hypothetical protein OsI_17620 [Oryza sativa Indica Group] |
| Match: gi|90399221|emb|CAJ86030.1| |
score: 349 |
e-value: 6e-103 |
Identity: 74.3% |
Span: 747bp (85.6%) |
Frame: 2 |
| B0414F07.4 [Oryza sativa (indica cultivar-group)] |
| Match: gi|115460882|ref|NP_001054041.1| |
score: 349 |
e-value: 6e-103 |
Identity: 74.3% |
Span: 747bp (85.6%) |
Frame: 2 |
| Os04g0641000 [Oryza sativa (japonica cultivar-group)] >gi113565612|dbj|BAF15955.1| Os04g0641000 [Oryza sativa Japonic... |
| Match: gi|38347314|emb|CAE05960.2| |
score: 349 |
e-value: 6e-103 |
Identity: 74.3% |
Span: 747bp (85.6%) |
Frame: 2 |
| OSJNBa0063C18.1 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|67515342|gb|AAY68200.1| |
score: 57.8 |
e-value: 7e-110 |
Identity: 100% |
Span: 81bp (9.3%) |
Frame: 3 |
| RNA polymerase IV second largest subunit [Antirrhinum majus] |
| Match: gi|67515338|gb|AAY68198.1| |
score: 57.8 |
e-value: 7e-119 |
Identity: 100% |
Span: 81bp (9.3%) |
Frame: 3 |
| RNA polymerase IV second largest subunit [Rhododendron macrophyllum] |
| Match: gi|255548744|ref|XP_002515428.1| |
score: 56.6 |
e-value: 1e-113 |
Identity: 96.3% |
Span: 81bp (9.3%) |
Frame: 3 |
| DNA-directed RNA polymerase subunit, putative [Ricinus communis] >gi223545372|gb|EEF46877.1| DNA-directed RNA polymer... |
| Match: gi|224141967|ref|XP_002324332.1| |
score: 55.5 |
e-value: 2e-114 |
Identity: 92.59% |
Span: 81bp (9.3%) |
Frame: 3 |
| predicted protein [Populus trichocarpa] >gi222865766|gb|EEF02897.1| predicted protein [Populus trichocarpa] |
| Match: gi|270231812|emb|CBI21137.1| |
score: 54.7 |
e-value: 3e-112 |
Identity: 96.15% |
Span: 78bp (8.9%) |
Frame: 3 |
| unnamed protein product [Vitis vinifera] |
| Match: gi|225430474|ref|XP_002283296.1| |
score: 54.7 |
e-value: 3e-112 |
Identity: 96.15% |
Span: 78bp (8.9%) |
Frame: 3 |
| PREDICTED: hypothetical protein [Vitis vinifera] |
| Match: gi|222629653|gb|EEE61785.1| |
score: 52.4 |
e-value: 6e-103 |
Identity: 88.89% |
Span: 81bp (9.3%) |
Frame: 3 |
| hypothetical protein OsJ_16357 [Oryza sativa Japonica Group] |
| Match: gi|90399221|emb|CAJ86030.1| |
score: 52.4 |
e-value: 6e-103 |
Identity: 88.89% |
Span: 81bp (9.3%) |
Frame: 3 |
| B0414F07.4 [Oryza sativa (indica cultivar-group)] |
| Match: gi|218195684|gb|EEC78111.1| |
score: 52.4 |
e-value: 6e-103 |
Identity: 88.89% |
Span: 81bp (9.3%) |
Frame: 3 |
| hypothetical protein OsI_17620 [Oryza sativa Indica Group] |
| Match: gi|38344903|emb|CAD41847.2| |
score: 52.4 |
e-value: 6e-103 |
Identity: 88.89% |
Span: 81bp (9.3%) |
Frame: 3 |
| OSJNBb0079B02.6 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|38347314|emb|CAE05960.2| |
score: 52.4 |
e-value: 6e-103 |
Identity: 88.89% |
Span: 81bp (9.3%) |
Frame: 3 |
| OSJNBa0063C18.1 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|115460882|ref|NP_001054041.1| |
score: 52.4 |
e-value: 6e-103 |
Identity: 88.89% |
Span: 81bp (9.3%) |
Frame: 3 |
| Os04g0641000 [Oryza sativa (japonica cultivar-group)] >gi113565612|dbj|BAF15955.1| Os04g0641000 [Oryza sativa Japonic... |
|
| 434 lower scoring hits censored -- only 25 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 10 hits recorded |
| Match: At3G18090.1 |
score: 342 |
e-value: 3e-104 |
Identity: 69.29% |
Span: 765bp (87.6%) |
Frame: 2 |
| Symbols: NRPD2b | NRPD2b (nuclear RNA polymerase D 2b); DNA binding / DNA-directed RNA polymerase | chr3:6195329-620... |
| Match: At3G23780.1 |
score: 340 |
e-value: 6e-104 |
Identity: 70.27% |
Span: 744bp (85.2%) |
Frame: 2 |
| Symbols: DRD2, NRPD2, NRPD2a | NRPD2a (NUCLEAR RNA POLYMERASE D 2A); DNA binding / DNA-directed RNA polymerase | chr... |
| Match: At4G21710.1 |
score: 179 |
e-value: 3e-50 |
Identity: 43.21% |
Span: 690bp (79.0%) |
Frame: 2 |
| Symbols: EMB1989, RPB2, NRPB2 | NRPB2 (EMBRYO DEFECTIVE 1989); DNA binding | chr4:11535696-11542212 REVERSE |
| Match: At5G45140.1 |
score: 116 |
e-value: 3e-30 |
Identity: 32.8% |
Span: 687bp (78.7%) |
Frame: 2 |
| Symbols: NRPC2 | NRPC2 (nuclear RNA polymerase C 2); DNA binding / DNA-directed RNA polymerase | chr5:18264643-18274... |
| Match: At1G29940.1 |
score: 107 |
e-value: 1e-27 |
Identity: 35.12% |
Span: 675bp (77.3%) |
Frame: 2 |
| Symbols: NRPA2 | NRPA2 (nuclear RNA polymerase A 2); DNA-directed RNA polymerase | chr1:10479306-10486654 REVERSE |
| Match: At3G23780.1 |
score: 56.6 |
e-value: 6e-104 |
Identity: 96.3% |
Span: 81bp (9.3%) |
Frame: 3 |
| Symbols: DRD2, NRPD2, NRPD2a | NRPD2a (NUCLEAR RNA POLYMERASE D 2A); DNA binding / DNA-directed RNA polymerase | chr... |
| Match: At3G18090.1 |
score: 56.6 |
e-value: 3e-104 |
Identity: 96.3% |
Span: 81bp (9.3%) |
Frame: 3 |
| Symbols: NRPD2b | NRPD2b (nuclear RNA polymerase D 2b); DNA binding / DNA-directed RNA polymerase | chr3:6195329-620... |
| Match: At4G21710.1 |
score: 38.5 |
e-value: 3e-50 |
Identity: 72% |
Span: 75bp (8.6%) |
Frame: 3 |
| Symbols: EMB1989, RPB2, NRPB2 | NRPB2 (EMBRYO DEFECTIVE 1989); DNA binding | chr4:11535696-11542212 REVERSE |
| Match: At1G29940.1 |
score: 35 |
e-value: 1e-27 |
Identity: 66.67% |
Span: 72bp (8.2%) |
Frame: 3 |
| Symbols: NRPA2 | NRPA2 (nuclear RNA polymerase A 2); DNA-directed RNA polymerase | chr1:10479306-10486654 REVERSE |
| Match: At5G45140.1 |
score: 34.3 |
e-value: 3e-30 |
Identity: 55.17% |
Span: 87bp (10.0%) |
Frame: 3 |
| Symbols: NRPC2 | NRPC2 (nuclear RNA polymerase C 2); DNA binding / DNA-directed RNA polymerase | chr5:18264643-18274... |
|
| swissprot [blastx] | Showing best 25 hits recorded |
| Match: P38420 |
score: 179 |
e-value: 4e-49 |
Identity: 43.21% |
Span: 690bp (79.0%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2 |
| Match: Q42877 |
score: 176 |
e-value: 2e-48 |
Identity: 42.8% |
Span: 690bp (79.0%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1 |
| Match: Q54J75 |
score: 167 |
e-value: 1e-45 |
Identity: 41.63% |
Span: 690bp (79.0%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1 |
| Match: Q02061 |
score: 166 |
e-value: 2e-40 |
Identity: 38.16% |
Span: 804bp (92.1%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces pombe GN=rpb2 PE=1 SV=2 |
| Match: Q753Q4 |
score: 160 |
e-value: 1e-43 |
Identity: 39.68% |
Span: 696bp (79.7%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii GN=RPB2 PE=3 SV=1 |
| Match: Q6FLD5 |
score: 159 |
e-value: 4e-43 |
Identity: 37.41% |
Span: 765bp (87.6%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata GN=RPB2 PE=3 SV=1 |
| Match: P08518 |
score: 159 |
e-value: 5e-43 |
Identity: 37.41% |
Span: 765bp (87.6%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces cerevisiae GN=RPB2 PE=1 SV=2 |
| Match: A5DHT2 |
score: 154 |
e-value: 2e-41 |
Identity: 38.46% |
Span: 696bp (79.7%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3 |
| Match: Q8SR75 |
score: 152 |
e-value: 1e-40 |
Identity: 39.83% |
Span: 681bp (78.0%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon cuniculi GN=RPB2 PE=3 SV=1 |
| Match: Q10578 |
score: 151 |
e-value: 6e-40 |
Identity: 39.92% |
Span: 681bp (78.0%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans GN=rpb-2 PE=2 SV=2 |
| Match: P08266 |
score: 149 |
e-value: 8e-40 |
Identity: 39.09% |
Span: 681bp (78.0%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2 |
| Match: P30876 |
score: 148 |
e-value: 6e-40 |
Identity: 39.92% |
Span: 681bp (78.0%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1 |
| Match: Q8CFI7 |
score: 147 |
e-value: 2e-39 |
Identity: 39.51% |
Span: 681bp (78.0%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=2 SV=2 |
| Match: Q6FLD5 |
score: 38.9 |
e-value: 4e-43 |
Identity: 72% |
Span: 75bp (8.6%) |
Frame: 3 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata GN=RPB2 PE=3 SV=1 |
| Match: Q753Q4 |
score: 38.9 |
e-value: 1e-43 |
Identity: 72% |
Span: 75bp (8.6%) |
Frame: 3 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii GN=RPB2 PE=3 SV=1 |
| Match: Q54J75 |
score: 38.9 |
e-value: 1e-45 |
Identity: 72% |
Span: 75bp (8.6%) |
Frame: 3 |
| DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1 |
| Match: Q8CFI7 |
score: 38.5 |
e-value: 2e-39 |
Identity: 70.37% |
Span: 81bp (9.3%) |
Frame: 3 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=2 SV=2 |
| Match: Q42877 |
score: 38.5 |
e-value: 2e-48 |
Identity: 72% |
Span: 75bp (8.6%) |
Frame: 3 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1 |
| Match: P38420 |
score: 38.5 |
e-value: 4e-49 |
Identity: 72% |
Span: 75bp (8.6%) |
Frame: 3 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2 |
| Match: P30876 |
score: 38.5 |
e-value: 6e-40 |
Identity: 70.37% |
Span: 81bp (9.3%) |
Frame: 3 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1 |
| Match: P08518 |
score: 37.7 |
e-value: 5e-43 |
Identity: 68% |
Span: 75bp (8.6%) |
Frame: 3 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces cerevisiae GN=RPB2 PE=1 SV=2 |
| Match: Q8SR75 |
score: 37.4 |
e-value: 1e-40 |
Identity: 64% |
Span: 75bp (8.6%) |
Frame: 3 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon cuniculi GN=RPB2 PE=3 SV=1 |
| Match: P08266 |
score: 37.4 |
e-value: 8e-40 |
Identity: 70.83% |
Span: 72bp (8.2%) |
Frame: 3 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2 |
| Match: A5DHT2 |
score: 37.4 |
e-value: 2e-41 |
Identity: 68% |
Span: 75bp (8.6%) |
Frame: 3 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3 |
| Match: Q10578 |
score: 35.8 |
e-value: 6e-40 |
Identity: 66.67% |
Span: 72bp (8.2%) |
Frame: 3 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans GN=rpb-2 PE=2 SV=2 |
|
| 262 lower scoring hits censored -- only 25 best hits are stored. |
