| genbank/nr [blastx] | Showing best 62 hits recorded |
| Match: gi|15229321|ref|NP_187112.1| |
score: 159.5 |
e-value: 6e-38 |
Identity: 71.77% |
Span: 369bp (41.5%) |
Frame: 3 |
| FLK (flowering locus KH domain); RNA binding / nucleic acid binding [Arabidopsis thaliana] >gi6175183|gb|AAF04909.1|A... |
| Match: gi|16924113|gb|AAL31692.1| |
score: 147.5 |
e-value: 2.4e-34 |
Identity: 69.11% |
Span: 369bp (41.5%) |
Frame: 3 |
| gi|16924113|gb|AAL31692.1| putative RNA binding protein [Oryza sativa] |
| Match: gi|37536904|ref|NP_922754.1| |
score: 94.36 |
e-value: 2.4e-18 |
Identity: 45.83% |
Span: 348bp (39.1%) |
Frame: 3 |
| gi|37536904|ref|NP_922754.1| putative nucleic acid binding protein [Oryza sativa (japonica cultivar-group)] gi|125978... |
| Match: gi|15236094|ref|NP_194330.1| |
score: 91.28 |
e-value: 2e-17 |
Identity: 49.48% |
Span: 288bp (32.4%) |
Frame: 3 |
| PEP (PEPPER); RNA binding / nucleic acid binding [Arabidopsis thaliana] >gi4538929|emb|CAB39665.1| putative nucleic a... |
| Match: gi|37534332|ref|NP_921468.1| |
score: 69.71 |
e-value: 6.2e-11 |
Identity: 38.83% |
Span: 306bp (34.4%) |
Frame: 3 |
| gi|37534332|ref|NP_921468.1| unknown protein [Oryza sativa (japonica cultivar-group)] gi|31432070|gb|AAP53755.1| unkn... |
| Match: gi|37535668|ref|NP_922136.1| |
score: 51.6 |
e-value: 1.8e-05 |
Identity: 38.46% |
Span: 195bp (21.9%) |
Frame: 3 |
| gi|37535668|ref|NP_922136.1| putative RNA-binding protein [Oryza sativa (japonica cultivar-group)] gi|22128716|gb|AAM... |
| Match: gi|22218811|pdb|1J5K|A |
score: 50.83 |
e-value: 3e-05 |
Identity: 37.04% |
Span: 243bp (27.3%) |
Frame: 3 |
| gi|22218811|pdb|1J5K|A Chain A, Complex Of The Kh3 Domain Of Hnrnp K With A Single_stranded 10mer Dna Oligonucleotide |
| Match: gi|32422371|ref|XP_331629.1| |
score: 49.68 |
e-value: 6.7e-05 |
Identity: 33.88% |
Span: 327bp (36.8%) |
Frame: 3 |
| gi|32422371|ref|XP_331629.1| hypothetical protein [Neurospora crassa] gi|28925551|gb|EAA34578.1| hypothetical protein... |
| Match: gi|15237393|ref|NP_199431.1| |
score: 49.68 |
e-value: 6.7e-05 |
Identity: 32.67% |
Span: 288bp (32.4%) |
Frame: 3 |
| KH domain-containing protein [Arabidopsis thaliana] >gi9757739|dbj|BAB08264.1| unnamed protein product [Arabidopsis t... |
| Match: gi|21553916|gb|AAM62999.1| |
score: 49.68 |
e-value: 6.7e-05 |
Identity: 32.67% |
Span: 288bp (32.4%) |
Frame: 3 |
| unknown [Arabidopsis thaliana] |
| Match: gi|32564028|ref|NP_491825.2| |
score: 49.29 |
e-value: 8.7e-05 |
Identity: 33.33% |
Span: 288bp (32.4%) |
Frame: 3 |
| gi|32564028|ref|NP_491825.2| putative RNA binding protein with KH domain(s) family member (40.5 kD) (1G895) [Caenorha... |
| Match: gi|460789|emb|CAA51267.1| |
score: 49.29 |
e-value: 8.7e-05 |
Identity: 40.91% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|460789|emb|CAA51267.1| transformation upregulated nuclear protein [Homo sapiens] |
| Match: gi|473912|gb|AAA21731.1| |
score: 49.29 |
e-value: 8.7e-05 |
Identity: 40.91% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|473912|gb|AAA21731.1| phosphoprotein |
| Match: gi|1083569|pir||A54143 |
score: 49.29 |
e-value: 8.7e-05 |
Identity: 40.91% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|1083569|pir||A54143 kappa-B motif-binding phosphoprotein - mouse |
| Match: gi|14165437|ref|NP_112553.1| |
score: 49.29 |
e-value: 8.7e-05 |
Identity: 40.91% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|14165437|ref|NP_112553.1| heterogeneous nuclear ribonucleoprotein K isoform a; dC-stretch binding protein; transfo... |
| Match: gi|26341878|dbj|BAC34601.1| |
score: 49.29 |
e-value: 8.7e-05 |
Identity: 40.91% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|26341878|dbj|BAC34601.1| unnamed protein product [Mus musculus] gi|26353476|dbj|BAC40368.1| unnamed protein produc... |
| Match: gi|25144314|ref|NP_740869.1| |
score: 49.29 |
e-value: 8.7e-05 |
Identity: 33.33% |
Span: 288bp (32.4%) |
Frame: 3 |
| gi|25144314|ref|NP_740869.1| putative RNA binding protein with KH domain(s) family member (1G895) [Caenorhabditis ele... |
| Match: gi|12230546|sp|O19049|ROK_RABIT |
score: 49.29 |
e-value: 8.7e-05 |
Identity: 40.91% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|12230546|sp|O19049|ROK_RABIT Heterogeneous nuclear ribonucleoprotein K (hnRNP K) gi|2644968|emb|CAA05815.1| hnRNP-... |
| Match: gi|13384620|ref|NP_079555.1| |
score: 49.29 |
e-value: 8.7e-05 |
Identity: 40.91% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|13384620|ref|NP_079555.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus] gi|14165435|ref|NP_112552.1| he... |
| Match: gi|6980674|pdb|1KHM|A |
score: 48.91 |
e-value: 0.00011 |
Identity: 40.91% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|6980674|pdb|1KHM|A Chain A, C-Terminal Kh Domain Of Hnrnp K (Kh3) |
| Match: gi|27882469|gb|AAH44711.1| |
score: 48.52 |
e-value: 0.00015 |
Identity: 39.39% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|27882469|gb|AAH44711.1| Hnrpk-prov protein [Xenopus laevis] |
| Match: gi|15217969|ref|NP_175569.1| |
score: 48.14 |
e-value: 0.00019 |
Identity: 33.75% |
Span: 240bp (27.0%) |
Frame: 3 |
| KH domain-containing protein [Arabidopsis thaliana] >gi12321677|gb|AAG50879.1|AC025294_17 hypothetical protein [Arabi... |
| Match: gi|542643|pir||S41224 |
score: 47.37 |
e-value: 0.00033 |
Identity: 39.39% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|542643|pir||S41224 hnRNP protein - African clawed frog gi|299029|gb|AAB26047.1| pre-mRNA binding K protein, hnRNP ... |
| Match: gi|38101960|gb|EAA48856.1| |
score: 46.21 |
e-value: 0.00074 |
Identity: 38.1% |
Span: 249bp (28.0%) |
Frame: 3 |
| gi|38101960|gb|EAA48856.1| hypothetical protein MG00514.4 [Magnaporthe grisea 70-15] |
| Match: gi|6006748|gb|AAF00596.1| |
score: 45.82 |
e-value: 0.001 |
Identity: 36.9% |
Span: 246bp (27.7%) |
Frame: 3 |
| gi|6006748|gb|AAF00596.1| hnRNP K protein homolog [Drosophila melanogaster] |
| Match: gi|24656342|ref|NP_665890.2| |
score: 45.82 |
e-value: 0.001 |
Identity: 36.9% |
Span: 246bp (27.7%) |
Frame: 3 |
| gi|24656342|ref|NP_665890.2| bancal CG13425-PB [Drosophila melanogaster] gi|23240206|gb|AAM68390.2| CG13425-PB [Droso... |
| Match: gi|6687391|emb|CAB64936.1| |
score: 45.82 |
e-value: 0.001 |
Identity: 36.9% |
Span: 246bp (27.7%) |
Frame: 3 |
| gi|6687391|emb|CAB64936.1| heterogeneous nuclear ribonucleoprotein (hnRNP) [Drosophila melanogaster] |
| Match: gi|8699624|gb|AAF78762.1| |
score: 45.82 |
e-value: 0.001 |
Identity: 36.9% |
Span: 246bp (27.7%) |
Frame: 3 |
| gi|8699624|gb|AAF78762.1| bancal protein [Drosophila melanogaster] |
| Match: gi|37550496|ref|XP_209517.2| |
score: 45.82 |
e-value: 0.001 |
Identity: 39.39% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|37550496|ref|XP_209517.2| similar to heterogeneous nuclear ribonucleoprotein K isoform a; dC-stretch binding prote... |
| Match: gi|25012664|gb|AAN71427.1| |
score: 45.82 |
e-value: 0.001 |
Identity: 36.9% |
Span: 246bp (27.7%) |
Frame: 3 |
| gi|25012664|gb|AAN71427.1| RE50346p [Drosophila melanogaster] |
| Match: gi|17862704|gb|AAL39829.1| |
score: 45.82 |
e-value: 0.001 |
Identity: 36.9% |
Span: 246bp (27.7%) |
Frame: 3 |
| gi|17862704|gb|AAL39829.1| LD45549p [Drosophila melanogaster] |
| Match: gi|28261403|gb|AAO37828.1| |
score: 44.28 |
e-value: 0.003 |
Identity: 31.51% |
Span: 219bp (24.6%) |
Frame: 3 |
| HEN4 [Arabidopsis thaliana] |
| Match: gi|22328051|ref|NP_201244.2| |
score: 44.28 |
e-value: 0.003 |
Identity: 31.51% |
Span: 219bp (24.6%) |
Frame: 3 |
| HEN4 (HUA ENHANCER 4); RNA binding / nucleic acid binding [Arabidopsis thaliana] |
| Match: gi|5453854|ref|NP_006187.1| |
score: 42.74 |
e-value: 0.008 |
Identity: 36.36% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|5453854|ref|NP_006187.1| poly(rC) binding protein 1; heterogenous nuclear ribonucleoprotein X; poly(rC)-binding pr... |
| Match: gi|6754994|ref|NP_035995.1| |
score: 42.74 |
e-value: 0.008 |
Identity: 36.36% |
Span: 198bp (22.3%) |
Frame: 3 |
| gi|6754994|ref|NP_035995.1| poly(rC) binding protein 1; poly(rC)-binding protein 1 [Mus musculus] gi|12230408|sp|O190... |
| Match: gi|21753335|dbj|BAC04327.1| |
score: 42.74 |
e-value: 0.008 |
Identity: 33.77% |
Span: 222bp (25.0%) |
Frame: 3 |
| gi|21753335|dbj|BAC04327.1| unnamed protein product [Homo sapiens] |
| Match: gi|30696273|ref|NP_200118.3| |
score: 42.36 |
e-value: 0.011 |
Identity: 30.21% |
Span: 288bp (32.4%) |
Frame: 3 |
| KH domain-containing protein [Arabidopsis thaliana] >gi17065220|gb|AAL32764.1| RNA-binding protein-like [Arabidopsis ... |
| Match: gi|8809595|dbj|BAA97146.1| |
score: 42.36 |
e-value: 0.011 |
Identity: 30.21% |
Span: 288bp (32.4%) |
Frame: 3 |
| RNA-binding protein-like [Arabidopsis thaliana] |
| Match: gi|10092617|ref|NP_065389.1| |
score: 41.97 |
e-value: 0.014 |
Identity: 32.94% |
Span: 255bp (28.7%) |
Frame: 3 |
| gi|10092617|ref|NP_065389.1| poly(rC) binding protein 3; poly(rC)-binding protein 3; poly (rC)-binding protein 3 [Hom... |
| Match: gi|10947014|ref|NP_067543.1| |
score: 41.97 |
e-value: 0.014 |
Identity: 32.94% |
Span: 255bp (28.7%) |
Frame: 3 |
| gi|10947014|ref|NP_067543.1| poly(rC) binding protein 3; poly(rC)-binding protein 3 [Mus musculus] gi|12230428|sp|P57... |
| Match: gi|15082311|gb|AAH12061.1| |
score: 41.97 |
e-value: 0.014 |
Identity: 32.94% |
Span: 255bp (28.7%) |
Frame: 3 |
| gi|15082311|gb|AAH12061.1| PCBP3 protein [Homo sapiens] |
| Match: gi|15236863|ref|NP_193572.1| |
score: 41.97 |
e-value: 0.014 |
Identity: 32.31% |
Span: 195bp (21.9%) |
Frame: 3 |
| KH domain-containing protein [Arabidopsis thaliana] >gi15214341|sp|P58223.1|Y4837_ARATH RecName: Full=KH domain-conta... |
| Match: gi|34852374|ref|XP_215373.2| |
score: 41.97 |
e-value: 0.014 |
Identity: 32.94% |
Span: 255bp (28.7%) |
Frame: 3 |
| gi|34852374|ref|XP_215373.2| similar to poly(rC) binding protein 3; poly(rC)-binding protein 3; poly (rC)-binding pro... |
| Match: gi|26330216|dbj|BAC28838.1| |
score: 41.97 |
e-value: 0.014 |
Identity: 32.94% |
Span: 255bp (28.7%) |
Frame: 3 |
| gi|26330216|dbj|BAC28838.1| unnamed protein product [Mus musculus] |
| Match: gi|26348076|dbj|BAC37686.1| |
score: 41.97 |
e-value: 0.014 |
Identity: 32.94% |
Span: 255bp (28.7%) |
Frame: 3 |
| gi|26348076|dbj|BAC37686.1| unnamed protein product [Mus musculus] |
| Match: gi|32451938|gb|AAH54653.1| |
score: 41.2 |
e-value: 0.024 |
Identity: 38.33% |
Span: 180bp (20.2%) |
Frame: 3 |
| gi|32451938|gb|AAH54653.1| Unknown (protein for MGC:66162) [Danio rerio] |
| Match: gi|15225229|ref|NP_180167.1| |
score: 40.82 |
e-value: 0.031 |
Identity: 29.81% |
Span: 294bp (33.1%) |
Frame: 3 |
| KH domain-containing protein [Arabidopsis thaliana] >gi19310435|gb|AAL84954.1| F17H15.1/F17H15.1 [Arabidopsis thalian... |
| Match: gi|31206125|ref|XP_312014.1| |
score: 40.43 |
e-value: 0.041 |
Identity: 30.34% |
Span: 255bp (28.7%) |
Frame: 3 |
| gi|31206125|ref|XP_312014.1| ENSANGP00000018709 [Anopheles gambiae] gi|21295883|gb|EAA08028.1| ENSANGP00000018709 [An... |
| Match: gi|31981202|ref|NP_067542.2| |
score: 40.43 |
e-value: 0.041 |
Identity: 34.18% |
Span: 216bp (24.3%) |
Frame: 3 |
| gi|31981202|ref|NP_067542.2| poly(rC) binding protein 4; poly(rC)-binding protein 4 [Mus musculus] gi|26346528|dbj|BA... |
| Match: gi|14715061|gb|AAH10694.1| |
score: 40.43 |
e-value: 0.041 |
Identity: 34.18% |
Span: 216bp (24.3%) |
Frame: 3 |
| gi|14715061|gb|AAH10694.1| Poly(rC) binding protein 4 [Mus musculus] |
| Match: gi|12837891|dbj|BAB23990.1| |
score: 40.43 |
e-value: 0.041 |
Identity: 34.18% |
Span: 216bp (24.3%) |
Frame: 3 |
| gi|12837891|dbj|BAB23990.1| unnamed protein product [Mus musculus] |
| Match: gi|31212109|ref|XP_315039.1| |
score: 40.43 |
e-value: 0.041 |
Identity: 29.59% |
Span: 285bp (32.1%) |
Frame: 3 |
| gi|31212109|ref|XP_315039.1| ENSANGP00000002408 [Anopheles gambiae] gi|30176258|gb|EAA10386.2| ENSANGP00000002408 [An... |
| Match: gi|34865871|ref|XP_343469.1| |
score: 40.43 |
e-value: 0.041 |
Identity: 34.18% |
Span: 216bp (24.3%) |
Frame: 3 |
| gi|34865871|ref|XP_343469.1| similar to poly(rC) binding protein 4 [Rattus norvegicus] |
| Match: gi|12239354|gb|AAG49443.1| |
score: 40.05 |
e-value: 0.053 |
Identity: 34.18% |
Span: 216bp (24.3%) |
Frame: 3 |
| gi|12239354|gb|AAG49443.1| LYST-interacting protein LIP4 [Homo sapiens] |
| Match: gi|12230430|sp|P57724|PCB4_MOUSE |
score: 40.05 |
e-value: 0.053 |
Identity: 37.14% |
Span: 210bp (23.6%) |
Frame: 3 |
| gi|12230430|sp|P57724|PCB4_MOUSE Poly(rC)-binding protein 4 (Alpha-CP4) gi|9957163|gb|AAG09239.1| alphaCP-4 [Mus musc... |
| Match: gi|14670369|ref|NP_127501.1| |
score: 40.05 |
e-value: 0.053 |
Identity: 34.18% |
Span: 216bp (24.3%) |
Frame: 3 |
| gi|14670369|ref|NP_127501.1| poly(rC) binding protein 4 isoform c; RNA binding protein MCG10; poly(rC)-binding protei... |
| Match: gi|14670371|ref|NP_127502.1| |
score: 40.05 |
e-value: 0.053 |
Identity: 34.18% |
Span: 216bp (24.3%) |
Frame: 3 |
| gi|14670371|ref|NP_127502.1| poly(rC) binding protein 4 isoform b; RNA binding protein MCG10; poly(rC)-binding protei... |
| Match: gi|33150676|gb|AAP97216.1| |
score: 40.05 |
e-value: 0.053 |
Identity: 34.18% |
Span: 216bp (24.3%) |
Frame: 3 |
| gi|33150676|gb|AAP97216.1| CBP [Homo sapiens] |
| Match: gi|28571865|ref|NP_788733.1| |
score: 40.05 |
e-value: 0.053 |
Identity: 24.49% |
Span: 294bp (33.1%) |
Frame: 3 |
| gi|28571865|ref|NP_788733.1| multiple ankyrin repeats single KH domain CG33106-PA [Drosophila melanogaster] gi|285718... |
| Match: gi|18251232|gb|AAL65911.1| |
score: 40.05 |
e-value: 0.053 |
Identity: 24.49% |
Span: 294bp (33.1%) |
Frame: 3 |
| gi|18251232|gb|AAL65911.1| multiple ankyrin repeat single KH domain protein [Drosophila melanogaster] |
| Match: gi|9966803|ref|NP_065151.1| |
score: 40.05 |
e-value: 0.053 |
Identity: 34.18% |
Span: 216bp (24.3%) |
Frame: 3 |
| gi|9966803|ref|NP_065151.1| poly(rC) binding protein 4 isoform a; RNA binding protein MCG10; poly(rC)-binding protein... |
| Match: gi|16877720|gb|AAH17098.1| |
score: 40.05 |
e-value: 0.053 |
Identity: 34.18% |
Span: 216bp (24.3%) |
Frame: 3 |
| gi|16877720|gb|AAH17098.1| PCBP4 protein [Homo sapiens] |
|
| arabidopsis/peptide [blastx] | Showing best 8 hits recorded |
| Match: At3g04610.1 |
score: 159.5 |
e-value: 2e-39 |
Identity: 71.77% |
Span: 369bp (41.5%) |
Frame: 3 |
| At3g04610.1 68410.m00455 KH domain protein similar putative nucleic acid binding protein GB:CAB39665 [Arabidopsis tha... |
| Match: At4g26000.1 |
score: 91.28 |
e-value: 6.8e-19 |
Identity: 49.48% |
Span: 288bp (32.4%) |
Frame: 3 |
| At4g26000.1 68411.m03409 KH domain protein single-stranded nucleic acid-binding protein CBP - mouse, PIR2:S78515 |
| Match: At5g46190.1 |
score: 49.68 |
e-value: 2.3e-06 |
Identity: 32.67% |
Span: 288bp (32.4%) |
Frame: 3 |
| At5g46190.1 68412.m05122 KH domain protein strong similarity to unknown protein (pir||T04533) |
| Match: At1g51580.1 |
score: 48.14 |
e-value: 6.6e-06 |
Identity: 33.75% |
Span: 240bp (27.0%) |
Frame: 3 |
| At1g51580.1 68408.m05330 KH domain protein |
| Match: At5g64390.1 |
score: 44.28 |
e-value: 9.5e-05 |
Identity: 31.51% |
Span: 219bp (24.6%) |
Frame: 3 |
| At5g64390.1 68412.m07317 KH domain protein contains similarity to RNA-binding protein |
| Match: At5g53060.1 |
score: 42.36 |
e-value: 0.00036 |
Identity: 30.21% |
Span: 288bp (32.4%) |
Frame: 3 |
| At5g53060.1 68412.m05959 KH domain protein |
| Match: At4g18375.2 |
score: 41.97 |
e-value: 0.00047 |
Identity: 32.31% |
Span: 195bp (21.9%) |
Frame: 3 |
| At4g18375.2 68411.m02488 KH domain protein contains similarity to RNA-binding KH-domains PF:00013 |
| Match: At2g25970.1 |
score: 40.82 |
e-value: 0.001 |
Identity: 29.81% |
Span: 294bp (33.1%) |
Frame: 3 |
| At2g25970.1 68409.m02825 KH domain protein |
|
