| genbank/nr [blastx] | Showing best 100 hits recorded |
| Match: gi|421960|pir||S34448 |
score: 374 |
e-value: 2e-102 |
Identity: 97.85% |
Span: 699bp (72.7%) |
Frame: 1 |
| gi|421960|pir||S34448 small nuclear ribonucleoprotein U2B'' - potato gi|169589|gb|AAA33847.1| spliceosomal protein |
| Match: gi|15227729|ref|NP_180585.1| |
score: 290.8 |
e-value: 2.4e-77 |
Identity: 68.1% |
Span: 696bp (72.3%) |
Frame: 1 |
| U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis th... |
| Match: gi|21593001|gb|AAM64950.1| |
score: 286.2 |
e-value: 5.9e-76 |
Identity: 67.24% |
Span: 696bp (72.3%) |
Frame: 1 |
| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana] |
| Match: gi|30679897|ref|NP_172177.3| |
score: 282.7 |
e-value: 6.5e-75 |
Identity: 70.09% |
Span: 696bp (72.3%) |
Frame: 1 |
| small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative [Arabidopsis thaliana] |
| Match: gi|30679892|ref|NP_850936.1| |
score: 282 |
e-value: 1.1e-74 |
Identity: 69.23% |
Span: 696bp (72.3%) |
Frame: 1 |
| small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative [Arabidopsis thaliana] >gi23296313|gb|... |
| Match: gi|19347861|gb|AAL85989.1| |
score: 281.6 |
e-value: 1.4e-74 |
Identity: 69.23% |
Span: 696bp (72.3%) |
Frame: 1 |
| putative spliceosomal protein (U2B) [Arabidopsis thaliana] |
| Match: gi|25294325|pir||C86204 |
score: 279.6 |
e-value: 5.5e-74 |
Identity: 66.27% |
Span: 696bp (72.3%) |
Frame: 1 |
| gi|25294325|pir||C86204 hypothetical protein [imported] - Arabidopsis thaliana gi|8954049|gb|AAF82223.1| Strong simil... |
| Match: gi|2119045|pir||S59117 |
score: 232.3 |
e-value: 1e-59 |
Identity: 56.49% |
Span: 687bp (71.4%) |
Frame: 1 |
| gi|2119045|pir||S59117 small nuclear ribonucleoprotein U1A - potato gi|1050840|emb|CAA90282.1| U1snRNP-specific prote... |
| Match: gi|34897622|ref|NP_910157.1| |
score: 206.8 |
e-value: 4.5e-52 |
Identity: 52.99% |
Span: 678bp (70.5%) |
Frame: 1 |
| gi|34897622|ref|NP_910157.1| putative small nuclear ribonucleoprotein U1A [Oryza sativa] gi|14595706|gb|AAK70905.1| p... |
| Match: gi|15226631|ref|NP_182280.1| |
score: 206.1 |
e-value: 7.7e-52 |
Identity: 54.81% |
Span: 684bp (71.1%) |
Frame: 1 |
| U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] >gi105... |
| Match: gi|23956110|ref|NP_067310.1| |
score: 205.3 |
e-value: 1.3e-51 |
Identity: 54.74% |
Span: 684bp (71.1%) |
Frame: 1 |
| gi|23956110|ref|NP_067310.1| U2 small nuclear ribonucleoprotein B [Mus musculus] gi|12847289|dbj|BAB27510.1| unnamed ... |
| Match: gi|34858820|ref|XP_342529.1| |
score: 204.1 |
e-value: 2.9e-51 |
Identity: 54.31% |
Span: 684bp (71.1%) |
Frame: 1 |
| gi|34858820|ref|XP_342529.1| similar to U2 small nuclear ribonucleoprotein B [Rattus norvegicus] |
| Match: gi|12850013|dbj|BAB28565.1| |
score: 203.8 |
e-value: 3.8e-51 |
Identity: 54.74% |
Span: 684bp (71.1%) |
Frame: 1 |
| gi|12850013|dbj|BAB28565.1| unnamed protein product [Mus musculus] |
| Match: gi|17737284|ref|NP_511045.1| |
score: 203.4 |
e-value: 5e-51 |
Identity: 52.89% |
Span: 675bp (70.2%) |
Frame: 1 |
| gi|17737284|ref|NP_511045.1| sans fille CG4528-PA [Drosophila melanogaster] gi|1173325|sp|P43332|RU1A_DROME U1 small ... |
| Match: gi|4507123|ref|NP_003083.1| |
score: 203.4 |
e-value: 5e-51 |
Identity: 54.31% |
Span: 684bp (71.1%) |
Frame: 1 |
| gi|4507123|ref|NP_003083.1| small nuclear ribonucleoprotein polypeptide B''; U2 small nuclear ribonucleoprotein B'' [... |
| Match: gi|37748043|gb|AAH59527.1| |
score: 199.1 |
e-value: 9.4e-50 |
Identity: 52.08% |
Span: 708bp (73.6%) |
Frame: 1 |
| gi|37748043|gb|AAH59527.1| Unknown (protein for IMAGE:4201535) [Danio rerio] |
| Match: gi|48139036|ref|XP_393440.1| |
score: 198 |
e-value: 2.1e-49 |
Identity: 52.59% |
Span: 684bp (71.1%) |
Frame: 1 |
| gi|48139036|ref|XP_393440.1| similar to ENSANGP00000019197 [Apis mellifera] |
| Match: gi|31240911|ref|XP_320869.1| |
score: 193.7 |
e-value: 4e-48 |
Identity: 50.21% |
Span: 705bp (73.3%) |
Frame: 1 |
| gi|31240911|ref|XP_320869.1| ENSANGP00000019197 [Anopheles gambiae] gi|21288097|gb|EAA00418.1| ENSANGP00000019197 [An... |
| Match: gi|47211375|emb|CAF89828.1| |
score: 193 |
e-value: 6.8e-48 |
Identity: 53.28% |
Span: 684bp (71.1%) |
Frame: 1 |
| gi|47211375|emb|CAF89828.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|47225009|emb|CAF97424.1| |
score: 185.3 |
e-value: 1.4e-45 |
Identity: 45.22% |
Span: 696bp (72.3%) |
Frame: 1 |
| gi|47225009|emb|CAF97424.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|38093549|ref|XP_358059.1| |
score: 172.6 |
e-value: 9.5e-42 |
Identity: 48.46% |
Span: 672bp (69.9%) |
Frame: 1 |
| gi|38093549|ref|XP_358059.1| similar to U2 small nuclear ribonucleoprotein B [Mus musculus] |
| Match: gi|38090057|ref|XP_356179.1| |
score: 172.2 |
e-value: 1.2e-41 |
Identity: 44.88% |
Span: 696bp (72.3%) |
Frame: 1 |
| gi|38090057|ref|XP_356179.1| similar to U1 small nuclear ribonucleoprotein A (U1 snRNP A protein) [Mus musculus] |
| Match: gi|38073622|ref|XP_138180.3| |
score: 169.1 |
e-value: 1e-40 |
Identity: 50% |
Span: 672bp (69.9%) |
Frame: 1 |
| gi|38073622|ref|XP_138180.3| similar to U2 small nuclear ribonucleoprotein B [Mus musculus] |
| Match: gi|38073944|ref|XP_354725.1| |
score: 166 |
e-value: 8.9e-40 |
Identity: 44.72% |
Span: 672bp (69.9%) |
Frame: 1 |
| gi|38073944|ref|XP_354725.1| similar to U2 small nuclear ribonucleoprotein B [Mus musculus] |
| Match: gi|17541322|ref|NP_500505.1| |
score: 156.8 |
e-value: 5.4e-37 |
Identity: 44.1% |
Span: 684bp (71.1%) |
Frame: 1 |
| gi|17541322|ref|NP_500505.1| small nuclear ribonucleoprotein (rnp-3) [Caenorhabditis elegans] gi|7505521|pir||T29388 ... |
| Match: gi|39585996|emb|CAE68287.1| |
score: 156 |
e-value: 9.2e-37 |
Identity: 42.61% |
Span: 684bp (71.1%) |
Frame: 1 |
| gi|39585996|emb|CAE68287.1| Hypothetical protein CBG13972 [Caenorhabditis briggsae] |
| Match: gi|38081798|ref|XP_354985.1| |
score: 155.2 |
e-value: 1.6e-36 |
Identity: 44.31% |
Span: 672bp (69.9%) |
Frame: 1 |
| gi|38081798|ref|XP_354985.1| similar to small nuclear RNA [Mus musculus] |
| Match: gi|39585995|emb|CAE68286.1| |
score: 154.1 |
e-value: 3.5e-36 |
Identity: 39.91% |
Span: 684bp (71.1%) |
Frame: 1 |
| gi|39585995|emb|CAE68286.1| Hypothetical protein CBG13971 [Caenorhabditis briggsae] |
| Match: gi|17541324|ref|NP_500504.1| |
score: 150.6 |
e-value: 3.8e-35 |
Identity: 41.48% |
Span: 684bp (71.1%) |
Frame: 1 |
| gi|17541324|ref|NP_500504.1| small nuclear ribonucleoprotein (rnp-2) [Caenorhabditis elegans] gi|15055398|gb|AAA98032... |
| Match: gi|38641409|gb|AAR26269.1| |
score: 142.9 |
e-value: 8e-33 |
Identity: 37.32% |
Span: 696bp (72.3%) |
Frame: 1 |
| gi|38641409|gb|AAR26269.1| nuclear ribonucleoprotein A [Oryctolagus cuniculus] |
| Match: gi|7505522|pir||T29387 |
score: 138.3 |
e-value: 2e-31 |
Identity: 40.17% |
Span: 684bp (71.1%) |
Frame: 1 |
| gi|7505522|pir||T29387 hypothetical protein K08D10.4 - Caenorhabditis elegans |
| Match: gi|19113216|ref|NP_596424.1| |
score: 131 |
e-value: 3.2e-29 |
Identity: 35.11% |
Span: 675bp (70.2%) |
Frame: 1 |
| gi|19113216|ref|NP_596424.1| Small nuclear ribonucleoprotein [Schizosaccharomyces pombe] gi|7493412|pir||T40479 small... |
| Match: gi|38093673|ref|XP_111314.2| |
score: 127.9 |
e-value: 2.7e-28 |
Identity: 37.82% |
Span: 672bp (69.9%) |
Frame: 1 |
| gi|38093673|ref|XP_111314.2| similar to GLE1-like, RNA export mediator; GLE1 (yeast homolog)-like, RNA export mediato... |
| Match: gi|23485600|gb|EAA20485.1| |
score: 125.9 |
e-value: 1e-27 |
Identity: 37.5% |
Span: 672bp (69.9%) |
Frame: 1 |
| gi|23485600|gb|EAA20485.1| hypothetical protein [Plasmodium yoelii yoelii] |
| Match: gi|23613861|ref|NP_704882.1| |
score: 118.6 |
e-value: 1.6e-25 |
Identity: 35.81% |
Span: 687bp (71.4%) |
Frame: 1 |
| gi|23613861|ref|NP_704882.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium falciparum 3D7] gi|2350524... |
| Match: gi|12836810|dbj|BAB23823.1| |
score: 117.5 |
e-value: 3.6e-25 |
Identity: 68.04% |
Span: 291bp (30.2%) |
Frame: 1 |
| gi|12836810|dbj|BAB23823.1| unnamed protein product [Mus musculus] |
| Match: gi|27692318|gb|AAH08311.1| |
score: 117.5 |
e-value: 3.6e-25 |
Identity: 68.04% |
Span: 291bp (30.2%) |
Frame: 1 |
| gi|27692318|gb|AAH08311.1| Similar to small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens] |
| Match: gi|49084028|ref|XP_404246.1| |
score: 115.5 |
e-value: 1.4e-24 |
Identity: 31.97% |
Span: 684bp (71.1%) |
Frame: 1 |
| gi|49084028|ref|XP_404246.1| hypothetical protein AN0109.2 [Aspergillus nidulans FGSC A4] >gi|40746131|gb|EAA65287.1|... |
| Match: gi|3659937|pdb|1A9N|B |
score: 114.4 |
e-value: 3.1e-24 |
Identity: 68.42% |
Span: 285bp (29.6%) |
Frame: 1 |
| gi|3659937|pdb|1A9N|B Chain B, U2 B''A'RNA TERNARY COMPLEX gi|3659938|pdb|1A9N|D Chain D, U2 B''A'RNA TERNARY COMPLEX |
| Match: gi|38111102|gb|EAA56730.1| |
score: 112.8 |
e-value: 8.9e-24 |
Identity: 33.04% |
Span: 675bp (70.2%) |
Frame: 1 |
| gi|38111102|gb|EAA56730.1| hypothetical protein MG07085.4 [Magnaporthe grisea 70-15] |
| Match: gi|4759156|ref|NP_004587.1| |
score: 111.3 |
e-value: 2.6e-23 |
Identity: 62.38% |
Span: 303bp (31.5%) |
Frame: 1 |
| gi|4759156|ref|NP_004587.1| small nuclear ribonucleoprotein polypeptide A [Homo sapiens] gi|134092|sp|P09012|RU1A_HUM... |
| Match: gi|34855379|ref|XP_214845.2| |
score: 111.3 |
e-value: 2.6e-23 |
Identity: 62.38% |
Span: 303bp (31.5%) |
Frame: 1 |
| gi|34855379|ref|XP_214845.2| similar to U1 small nuclear ribonucleoprotein A (U1 snRNP A protein) [Rattus norvegicus] |
| Match: gi|1633231|pdb|1FHT| |
score: 110.9 |
e-value: 3.4e-23 |
Identity: 65.96% |
Span: 282bp (29.3%) |
Frame: 1 |
| gi|1633231|pdb|1FHT| Rna-Binding Domain Of The U1a Spliceosomal Protein U1a117, Nmr, 43 Structures |
| Match: gi|41017904|sp|Q62189|RU1A_MOUSE |
score: 110.9 |
e-value: 3.4e-23 |
Identity: 67.74% |
Span: 279bp (29.0%) |
Frame: 1 |
| gi|41017904|sp|Q62189|RU1A_MOUSE U1 small nuclear ribonucleoprotein A (U1 snRNP protein A) (U1A protein) (U1-A) >gi|5... |
| Match: gi|31980689|ref|NP_056597.2| |
score: 110.9 |
e-value: 3.4e-23 |
Identity: 67.74% |
Span: 279bp (29.0%) |
Frame: 1 |
| gi|31980689|ref|NP_056597.2| small nuclear ribonucleoprotein polypeptide A; protein A of the U1 small nuclear RNA; U1... |
| Match: gi|38093624|ref|XP_358084.1| |
score: 110.9 |
e-value: 3.4e-23 |
Identity: 33.47% |
Span: 600bp (62.4%) |
Frame: 1 |
| gi|38093624|ref|XP_358084.1| similar to small nuclear RNA [Mus musculus] |
| Match: gi|1173326|sp|P45429|RU1A_XENLA |
score: 109 |
e-value: 1.3e-22 |
Identity: 61.86% |
Span: 291bp (30.2%) |
Frame: 1 |
| gi|1173326|sp|P45429|RU1A_XENLA U1 small nuclear ribonucleoprotein A (U1 snRNP A protein) gi|345608|pir||S30564 small... |
| Match: gi|27924189|gb|AAH44979.1| |
score: 109 |
e-value: 1.3e-22 |
Identity: 61.86% |
Span: 291bp (30.2%) |
Frame: 1 |
| gi|27924189|gb|AAH44979.1| Snf-prov protein [Xenopus laevis] |
| Match: gi|41054443|ref|NP_955965.1| |
score: 107.5 |
e-value: 3.7e-22 |
Identity: 64.52% |
Span: 279bp (29.0%) |
Frame: 1 |
| gi|41054443|ref|NP_955965.1| Unknown (protein for MGC:77810); wu:fc19d01 [Danio rerio] >gi|39850066|gb|AAH64308.1| Un... |
| Match: gi|7546344|pdb|1DZ5|A |
score: 107.5 |
e-value: 3.7e-22 |
Identity: 63.83% |
Span: 282bp (29.3%) |
Frame: 1 |
| gi|7546344|pdb|1DZ5|A Chain A, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex Reveals The Basis Of Cooper... |
| Match: gi|2982060|pdb|1AUD|A |
score: 107.5 |
e-value: 3.7e-22 |
Identity: 63.83% |
Span: 282bp (29.3%) |
Frame: 1 |
| gi|2982060|pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures |
| Match: gi|32416524|ref|XP_328740.1| |
score: 106.7 |
e-value: 6.4e-22 |
Identity: 32.92% |
Span: 675bp (70.2%) |
Frame: 1 |
| gi|32416524|ref|XP_328740.1| hypothetical protein [Neurospora crassa] gi|28924315|gb|EAA33468.1| hypothetical protein... |
| Match: gi|22219383|pdb|1M5K|C |
score: 106.7 |
e-value: 6.4e-22 |
Identity: 61% |
Span: 300bp (31.2%) |
Frame: 1 |
| gi|22219383|pdb|1M5K|C Chain C, Crystal Structure Of A Hairpin Ribozyme In The Catalytically-Active Conformation gi|2... |
| Match: gi|1083555|pir||S54857 |
score: 104.8 |
e-value: 2.4e-21 |
Identity: 51.35% |
Span: 321bp (33.4%) |
Frame: 1 |
| gi|1083555|pir||S54857 small nuclear ribonucleoprotein U2B'' - mouse (fragment) gi|840823|emb|CAA44752.1| U2-snRNP-sp... |
| Match: gi|33357758|pdb|1OIA|A |
score: 104 |
e-value: 4.1e-21 |
Identity: 63.16% |
Span: 285bp (29.6%) |
Frame: 1 |
| gi|33357758|pdb|1OIA|A Chain A, U1a Rnp Domain 1-95 gi|33357759|pdb|1OIA|B Chain B, U1a Rnp Domain 1-95 |
| Match: gi|1431699|pdb|1URN|A |
score: 102.1 |
e-value: 1.6e-20 |
Identity: 65.17% |
Span: 267bp (27.8%) |
Frame: 1 |
| gi|1431699|pdb|1URN|A Chain A, U1aRNA COMPLEX gi|1431701|pdb|1URN|B Chain B, U1aRNA COMPLEX gi|1431703|pdb|1URN|C Cha... |
| Match: gi|4759156|ref|NP_004587.1| |
score: 100.9 |
e-value: 3.5e-20 |
Identity: 56.32% |
Span: 255bp (26.5%) |
Frame: 1 |
| gi|4759156|ref|NP_004587.1| small nuclear ribonucleoprotein polypeptide A [Homo sapiens] gi|134092|sp|P09012|RU1A_HUM... |
| Match: gi|31980689|ref|NP_056597.2| |
score: 100.9 |
e-value: 3.5e-20 |
Identity: 56.32% |
Span: 255bp (26.5%) |
Frame: 1 |
| gi|31980689|ref|NP_056597.2| small nuclear ribonucleoprotein polypeptide A; protein A of the U1 small nuclear RNA; U1... |
| Match: gi|34855379|ref|XP_214845.2| |
score: 100.9 |
e-value: 3.5e-20 |
Identity: 56.32% |
Span: 255bp (26.5%) |
Frame: 1 |
| gi|34855379|ref|XP_214845.2| similar to U1 small nuclear ribonucleoprotein A (U1 snRNP A protein) [Rattus norvegicus] |
| Match: gi|41017904|sp|Q62189|RU1A_MOUSE |
score: 100.9 |
e-value: 3.5e-20 |
Identity: 56.32% |
Span: 255bp (26.5%) |
Frame: 1 |
| gi|41017904|sp|Q62189|RU1A_MOUSE U1 small nuclear ribonucleoprotein A (U1 snRNP protein A) (U1A protein) (U1-A) >gi|5... |
| Match: gi|46116888|ref|XP_384462.1| |
score: 100.5 |
e-value: 4.6e-20 |
Identity: 29.79% |
Span: 666bp (69.2%) |
Frame: 1 |
| gi|46116888|ref|XP_384462.1| hypothetical protein FG04286.1 [Gibberella zeae PH-1] >gi|42550769|gb|EAA73612.1| hypoth... |
| Match: gi|41054443|ref|NP_955965.1| |
score: 99.37 |
e-value: 1e-19 |
Identity: 57.14% |
Span: 246bp (25.6%) |
Frame: 1 |
| gi|41054443|ref|NP_955965.1| Unknown (protein for MGC:77810); wu:fc19d01 [Danio rerio] >gi|39850066|gb|AAH64308.1| Un... |
| Match: gi|27924189|gb|AAH44979.1| |
score: 98.98 |
e-value: 1.3e-19 |
Identity: 47.37% |
Span: 333bp (34.6%) |
Frame: 1 |
| gi|27924189|gb|AAH44979.1| Snf-prov protein [Xenopus laevis] |
| Match: gi|1173326|sp|P45429|RU1A_XENLA |
score: 98.98 |
e-value: 1.3e-19 |
Identity: 47.37% |
Span: 333bp (34.6%) |
Frame: 1 |
| gi|1173326|sp|P45429|RU1A_XENLA U1 small nuclear ribonucleoprotein A (U1 snRNP A protein) gi|345608|pir||S30564 small... |
| Match: gi|2554638|pdb|2U1A| |
score: 98.6 |
e-value: 1.7e-19 |
Identity: 56.47% |
Span: 249bp (25.9%) |
Frame: 1 |
| gi|2554638|pdb|2U1A| Rna Binding Domain 2 Of Human U1a Protein, Nmr, 20 Structures |
| Match: gi|840821|emb|CAA44751.1| |
score: 98.21 |
e-value: 2.3e-19 |
Identity: 54.17% |
Span: 276bp (28.7%) |
Frame: 1 |
| gi|840821|emb|CAA44751.1| U2-snRNP-specific b'' [Mus musculus] |
| Match: gi|6730009|pdb|1DRZ|A |
score: 96.67 |
e-value: 6.6e-19 |
Identity: 61.54% |
Span: 273bp (28.4%) |
Frame: 1 |
| gi|6730009|pdb|1DRZ|A Chain A, U1a Spliceosomal ProteinHEPATITIS DELTA VIRUS GENOMIC Ribozyme Complex |
| Match: gi|6137598|pdb|1CX0|A |
score: 96.29 |
e-value: 8.6e-19 |
Identity: 62.92% |
Span: 267bp (27.8%) |
Frame: 1 |
| gi|6137598|pdb|1CX0|A Chain A, Hepatitis Delta Virus Ribozyme |
| Match: gi|49068266|ref|XP_398422.1| |
score: 92.82 |
e-value: 9.5e-18 |
Identity: 33.48% |
Span: 639bp (66.4%) |
Frame: 1 |
| gi|49068266|ref|XP_398422.1| hypothetical protein UM00807.1 [Ustilago maydis 521] >gi|46095668|gb|EAK80901.1| hypothe... |
| Match: gi|38103960|gb|EAA50592.1| |
score: 85.89 |
e-value: 1.2e-15 |
Identity: 41.84% |
Span: 288bp (29.9%) |
Frame: 1 |
| gi|38103960|gb|EAA50592.1| hypothetical protein MG04351.4 [Magnaporthe grisea 70-15] |
| Match: gi|32418980|ref|XP_329968.1| |
score: 85.11 |
e-value: 2e-15 |
Identity: 33.77% |
Span: 450bp (46.8%) |
Frame: 1 |
| gi|32418980|ref|XP_329968.1| hypothetical protein [Neurospora crassa] gi|28926050|gb|EAA35039.1| hypothetical protein... |
| Match: gi|19112345|ref|NP_595553.1| |
score: 79.72 |
e-value: 8.3e-14 |
Identity: 53.49% |
Span: 258bp (26.8%) |
Frame: 1 |
| gi|19112345|ref|NP_595553.1| spliceosomal protein [Schizosaccharomyces pombe] gi|2257544|dbj|BAA21437.1| spliceosomal... |
| Match: gi|19112363|ref|NP_595571.1| |
score: 79.72 |
e-value: 8.3e-14 |
Identity: 53.49% |
Span: 258bp (26.8%) |
Frame: 1 |
| gi|19112363|ref|NP_595571.1| U2 b'-like spliceosomal protein; similar to S. cerevisiae MSL1; U2 snRNA-associated prot... |
| Match: gi|40950383|gb|AAR97825.1| |
score: 77.41 |
e-value: 4.1e-13 |
Identity: 40.54% |
Span: 333bp (34.6%) |
Frame: 1 |
| gi|40950383|gb|AAR97825.1| sans fille [Drosophila mojavensis] >gi|40950385|gb|AAR97826.1| sans fille [Drosophila moja... |
| Match: gi|40950451|gb|AAR97859.1| |
score: 77.03 |
e-value: 5.4e-13 |
Identity: 40.91% |
Span: 330bp (34.3%) |
Frame: 1 |
| gi|40950451|gb|AAR97859.1| sans fille [Drosophila arizonae] |
| Match: gi|40950435|gb|AAR97851.1| |
score: 77.03 |
e-value: 5.4e-13 |
Identity: 40.54% |
Span: 333bp (34.6%) |
Frame: 1 |
| gi|40950435|gb|AAR97851.1| sans fille [Drosophila navojoa] >gi|40950437|gb|AAR97852.1| sans fille [Drosophila navojoa... |
| Match: gi|40950461|gb|AAR97864.1| |
score: 76.26 |
e-value: 9.2e-13 |
Identity: 39.64% |
Span: 333bp (34.6%) |
Frame: 1 |
| gi|40950461|gb|AAR97864.1| sans fille [Drosophila parisiena] >gi|40950463|gb|AAR97865.1| sans fille [Drosophila paris... |
| Match: gi|23481350|gb|EAA17655.1| |
score: 75.48 |
e-value: 1.6e-12 |
Identity: 40.98% |
Span: 357bp (37.1%) |
Frame: 1 |
| gi|23481350|gb|EAA17655.1| u1 small nuclear ribonucleoprotein a [Plasmodium yoelii yoelii] |
| Match: gi|46438288|gb|EAK97621.1| |
score: 73.17 |
e-value: 7.8e-12 |
Identity: 30.26% |
Span: 675bp (70.2%) |
Frame: 1 |
| gi|46438288|gb|EAK97621.1| hypothetical protein CaO19.7375 [Candida albicans SC5314] |
| Match: gi|49079014|ref|XP_403200.1| |
score: 71.25 |
e-value: 3e-11 |
Identity: 26.57% |
Span: 582bp (60.5%) |
Frame: 1 |
| gi|49079014|ref|XP_403200.1| hypothetical protein UM05585.1 [Ustilago maydis 521] >gi|46101218|gb|EAK86451.1| hypothe... |
| Match: gi|23619006|ref|NP_704968.1| |
score: 71.25 |
e-value: 3e-11 |
Identity: 42.71% |
Span: 288bp (29.9%) |
Frame: 1 |
| gi|23619006|ref|NP_704968.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium falciparum 3D7] gi|23615213|e... |
| Match: gi|45184845|ref|NP_982563.1| |
score: 59.69 |
e-value: 8.9e-08 |
Identity: 44.94% |
Span: 261bp (27.1%) |
Frame: 1 |
| gi|45184845|ref|NP_982563.1| AAR022Wp [Eremothecium gossypii] >gi|44980454|gb|AAS50387.1| AAR022Wp [Eremothecium goss... |
| Match: gi|49096912|ref|XP_409916.1| |
score: 58.54 |
e-value: 2e-07 |
Identity: 49.02% |
Span: 153bp (15.9%) |
Frame: 1 |
| gi|49096912|ref|XP_409916.1| hypothetical protein AN5779.2 [Aspergillus nidulans FGSC A4] >gi|40743682|gb|EAA62872.1|... |
| Match: gi|46445270|gb|EAL04539.1| |
score: 55.07 |
e-value: 2.2e-06 |
Identity: 34.75% |
Span: 354bp (36.8%) |
Frame: 1 |
| gi|46445270|gb|EAL04539.1| hypothetical protein CaO19.12210 [Candida albicans SC5314] |
| Match: gi|46445468|gb|EAL04736.1| |
score: 54.68 |
e-value: 2.9e-06 |
Identity: 38.04% |
Span: 276bp (28.7%) |
Frame: 1 |
| gi|46445468|gb|EAL04736.1| hypothetical protein CaO19.4748 [Candida albicans SC5314] |
| Match: gi|23619006|ref|NP_704968.1| |
score: 53.53 |
e-value: 6.4e-06 |
Identity: 34.52% |
Span: 252bp (26.2%) |
Frame: 1 |
| gi|23619006|ref|NP_704968.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium falciparum 3D7] gi|23615213|e... |
| Match: gi|42408101|dbj|BAD09242.1| |
score: 51.22 |
e-value: 3.2e-05 |
Identity: 32.29% |
Span: 264bp (27.4%) |
Frame: 1 |
| gi|42408101|dbj|BAD09242.1| putative RNA-binding protein [Oryza sativa (japonica cultivar-group)] >gi|42408712|dbj|BA... |
| Match: gi|47078331|gb|AAT09814.1| |
score: 50.83 |
e-value: 4.2e-05 |
Identity: 32.91% |
Span: 213bp (22.1%) |
Frame: 1 |
| gi|47078331|gb|AAT09814.1| MEG5 [Zea mays] |
| Match: gi|40950447|gb|AAR97857.1| |
score: 48.14 |
e-value: 0.00027 |
Identity: 34.83% |
Span: 267bp (27.8%) |
Frame: 1 |
| gi|40950447|gb|AAR97857.1| sans fille [Drosophila arizonae] |
| Match: gi|39595153|emb|CAE60190.1| |
score: 47.75 |
e-value: 0.00035 |
Identity: 35.71% |
Span: 279bp (29.0%) |
Frame: 1 |
| gi|39595153|emb|CAE60190.1| Hypothetical protein CBG03748 [Caenorhabditis briggsae] |
| Match: gi|23304837|emb|CAD48198.1| |
score: 47.75 |
e-value: 0.00035 |
Identity: 32.58% |
Span: 246bp (25.6%) |
Frame: 1 |
| RNA-binding protein [Medicago truncatula] |
| Match: gi|32129324|gb|AAP73851.1| |
score: 46.98 |
e-value: 0.0006 |
Identity: 29.67% |
Span: 267bp (27.8%) |
Frame: 1 |
| gi|32129324|gb|AAP73851.1| putative RNA binding protein [Oryza sativa (japonica cultivar-group)] |
| Match: gi|13124485|sp|Q9WVB0|RBMS_MOUSE |
score: 46.59 |
e-value: 0.00078 |
Identity: 29.7% |
Span: 291bp (30.2%) |
Frame: 1 |
| gi|13124485|sp|Q9WVB0|RBMS_MOUSE RNA-binding protein with multiple splicing (RBP-MS) (HEart, RRM Expressed Sequence) ... |
| Match: gi|48094614|ref|XP_394225.1| |
score: 46.59 |
e-value: 0.00078 |
Identity: 36.36% |
Span: 186bp (19.3%) |
Frame: 1 |
| gi|48094614|ref|XP_394225.1| similar to squamous cell carcinoma antigen recognized by T-cells 3 [Apis mellifera] |
| Match: gi|32398796|emb|CAD98506.1| |
score: 46.59 |
e-value: 0.00078 |
Identity: 34.09% |
Span: 264bp (27.4%) |
Frame: 1 |
| gi|32398796|emb|CAD98506.1| U1 snrnp, possible [Cryptosporidium parvum] |
| Match: gi|17508419|ref|NP_492508.1| |
score: 46.59 |
e-value: 0.00078 |
Identity: 32% |
Span: 279bp (29.0%) |
Frame: 1 |
| gi|17508419|ref|NP_492508.1| MEChanosensory abnormality MEC-8, regulator of alternative splicing, RNA-Binding Protein... |
| Match: gi|1370048|emb|CAA64866.1| |
score: 46.59 |
e-value: 0.00078 |
Identity: 32% |
Span: 279bp (29.0%) |
Frame: 1 |
| gi|1370048|emb|CAA64866.1| mec-8 [Caenorhabditis elegans] |
| Match: gi|31206383|ref|XP_312143.1| |
score: 46.21 |
e-value: 0.001 |
Identity: 28.87% |
Span: 285bp (29.6%) |
Frame: 1 |
| gi|31206383|ref|XP_312143.1| ENSANGP00000022192 [Anopheles gambiae] gi|21295636|gb|EAA07781.1| ENSANGP00000022192 [An... |
| Match: gi|26347873|dbj|BAC37585.1| |
score: 46.21 |
e-value: 0.001 |
Identity: 28.42% |
Span: 279bp (29.0%) |
Frame: 1 |
| gi|26347873|dbj|BAC37585.1| unnamed protein product [Mus musculus] |
| Match: gi|12848898|dbj|BAB28128.1| |
score: 46.21 |
e-value: 0.001 |
Identity: 28.42% |
Span: 279bp (29.0%) |
Frame: 1 |
| gi|12848898|dbj|BAB28128.1| unnamed protein product [Mus musculus] gi|12849426|dbj|BAB28336.1| unnamed protein produc... |
|
| 8 lower scoring hits censored -- only 100 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 10 hits recorded |
| Match: At2g30260.1 |
score: 290.8 |
e-value: 6.4e-79 |
Identity: 68.1% |
Span: 696bp (72.3%) |
Frame: 1 |
| At2g30260.1 68409.m03337 small nuclear ribonucleoprotein U2B (spliceosomal protein), putative similar to spliceosomal... |
| Match: At1g06960.2 |
score: 282.7 |
e-value: 1.8e-76 |
Identity: 70.09% |
Span: 696bp (72.3%) |
Frame: 1 |
| At1g06960.2 68408.m09158 small nuclear ribonucleoprotein U2B (spliceosomal protein), putative non-consensus splice do... |
| Match: At1g06960.1 |
score: 282 |
e-value: 3e-76 |
Identity: 69.23% |
Span: 696bp (72.3%) |
Frame: 1 |
| At1g06960.1 68408.m09157 small nuclear ribonucleoprotein U2B (spliceosomal protein), putative non-consensus splice do... |
| Match: At2g47580.1 |
score: 206.1 |
e-value: 2.1e-53 |
Identity: 54.81% |
Span: 684bp (71.1%) |
Frame: 1 |
| At2g47580.1 68409.m05362 small nuclear ribonucleoprotein (spliceosomal protein) U1A identical to GB:Z49991 U1snRNP-sp... |
| Match: At5g12190.1 |
score: 45.05 |
e-value: 6.2e-05 |
Identity: 29.87% |
Span: 225bp (23.4%) |
Frame: 1 |
| At5g12190.1 68412.m01323 RNA recognition motif (RRM) - containing protein similar to SP|P52298 20 kDa nuclear cap bin... |
| Match: At1g21312.1 |
score: 40.82 |
e-value: 0.001 |
Identity: 25.84% |
Span: 243bp (25.3%) |
Frame: 1 |
| At1g21312.1 68414.m02663 RNA recognition motif (RRM)-containing protein contains Pfam profile PF00076: RNA recognitio... |
| Match: At5g60980.1 |
score: 40.43 |
e-value: 0.002 |
Identity: 27% |
Span: 282bp (29.3%) |
Frame: 1 |
| At5g60980.1 68412.m08037 NTF2-containing RNA-binding protein, putative G3BP ras-GTPase-activating protein SH3-domain ... |
| Match: At1g76940.1 |
score: 40.05 |
e-value: 0.002 |
Identity: 24.72% |
Span: 243bp (25.3%) |
Frame: 1 |
| At1g76940.1 68408.m08222 expressed protein |
| Match: At4g12640.1 |
score: 38.89 |
e-value: 0.004 |
Identity: 23.3% |
Span: 597bp (62.1%) |
Frame: 1 |
| At4g12640.1 68411.m01803 RNA recognition motif (RRM) - containing protein contains InterPro entry IPR000504: RNA-bind... |
| Match: At3g13700.1 |
score: 37.74 |
e-value: 0.01 |
Identity: 40.68% |
Span: 171bp (17.8%) |
Frame: 1 |
| At3g13700.1 68410.m01551 RNA-binding protein, putative similar to mec-8 [Caenorhabditis elegans] GI:1370048; contains... |
|
