| genbank/nr [blastx] | Showing best 25 hits recorded |
| Match: gi|169589|gb|AAA33847.1| |
score: 387 |
e-value: 1e-105 |
Identity: 99.57% |
Span: 693bp (72.0%) |
Frame: 3 |
| spliceosomal protein [Solanum tuberosum] |
| Match: gi|224146679|ref|XP_002326095.1| |
score: 322 |
e-value: 4e-86 |
Identity: 79.06% |
Span: 690bp (71.7%) |
Frame: 3 |
| predicted protein [Populus trichocarpa] >gi222862970|gb|EEF00477.1| predicted protein [Populus trichocarpa] |
| Match: gi|225434417|ref|XP_002271864.1| |
score: 319 |
e-value: 3e-85 |
Identity: 80.34% |
Span: 690bp (71.7%) |
Frame: 3 |
| PREDICTED: hypothetical protein [Vitis vinifera] >gi270227130|emb|CBI15863.1| unnamed protein product [Vitis vinifera] |
| Match: gi|255647802|gb|ACU24361.1| |
score: 317 |
e-value: 2e-84 |
Identity: 78.54% |
Span: 690bp (71.7%) |
Frame: 3 |
| unknown [Glycine max] |
| Match: gi|255627621|gb|ACU14155.1| |
score: 306 |
e-value: 2e-81 |
Identity: 76.82% |
Span: 690bp (71.7%) |
Frame: 3 |
| unknown [Glycine max] |
| Match: gi|255553401|ref|XP_002517742.1| |
score: 306 |
e-value: 2e-81 |
Identity: 79.06% |
Span: 690bp (71.7%) |
Frame: 3 |
| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis] >gi223543140|gb|EEF44674.1| small nuclear ribo... |
| Match: gi|15227729|ref|NP_180585.1| |
score: 296 |
e-value: 2e-78 |
Identity: 71.79% |
Span: 690bp (71.7%) |
Frame: 3 |
| U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis th... |
| Match: gi|21593001|gb|AAM64950.1| |
score: 291 |
e-value: 6e-77 |
Identity: 70.94% |
Span: 690bp (71.7%) |
Frame: 3 |
| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana] |
| Match: gi|116781538|gb|ABK22144.1| |
score: 284 |
e-value: 9e-75 |
Identity: 70.34% |
Span: 690bp (71.7%) |
Frame: 3 |
| unknown [Picea sitchensis] |
| Match: gi|30679892|ref|NP_850936.1| |
score: 284 |
e-value: 1e-74 |
Identity: 69.4% |
Span: 690bp (71.7%) |
Frame: 3 |
| small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative [Arabidopsis thaliana] >gi23296313|gb|... |
| Match: gi|30679897|ref|NP_172177.3| |
score: 283 |
e-value: 2e-74 |
Identity: 69.4% |
Span: 690bp (71.7%) |
Frame: 3 |
| small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative [Arabidopsis thaliana] |
| Match: gi|19347861|gb|AAL85989.1| |
score: 282 |
e-value: 4e-74 |
Identity: 68.53% |
Span: 690bp (71.7%) |
Frame: 3 |
| putative spliceosomal protein (U2B) [Arabidopsis thaliana] |
| Match: gi|8954049|gb|AAF82223.1|AC067971_31 |
score: 282 |
e-value: 4e-74 |
Identity: 65.99% |
Span: 690bp (71.7%) |
Frame: 3 |
| Strong similarity to a small nuclear ribonucleoprotein U2B'' - potato from Solanum tuberosum gbM72892. It contains a... |
| Match: gi|242036017|ref|XP_002465403.1| |
score: 280 |
e-value: 2e-73 |
Identity: 69.96% |
Span: 690bp (71.7%) |
Frame: 3 |
| hypothetical protein SORBIDRAFT_01g038060 [Sorghum bicolor] >gi241919257|gb|EER92401.1| hypothetical protein SORBIDRA... |
| Match: gi|226531516|ref|NP_001149883.1| |
score: 278 |
e-value: 8e-73 |
Identity: 69.53% |
Span: 690bp (71.7%) |
Frame: 3 |
| spliceosomal protein [Zea mays] >gi194696844|gb|ACF82506.1| unknown [Zea mays] >gi|195635261|gb|ACG37099.1| spliceoso... |
| Match: gi|224029017|gb|ACN33584.1| |
score: 276 |
e-value: 3e-72 |
Identity: 69.1% |
Span: 690bp (71.7%) |
Frame: 3 |
| unknown [Zea mays] |
| Match: gi|218192634|gb|EEC75061.1| |
score: 274 |
e-value: 9e-72 |
Identity: 68.53% |
Span: 690bp (71.7%) |
Frame: 3 |
| hypothetical protein OsI_11177 [Oryza sativa Indica Group] |
| Match: gi|115452491|ref|NP_001049846.1| |
score: 273 |
e-value: 2e-71 |
Identity: 68.1% |
Span: 690bp (71.7%) |
Frame: 3 |
| Os03g0298800 [Oryza sativa (japonica cultivar-group)] >gi108707669|gb|ABF95464.1| RNA recognition motif family protei... |
| Match: gi|108707670|gb|ABF95465.1| |
score: 269 |
e-value: 3e-70 |
Identity: 67.67% |
Span: 690bp (71.7%) |
Frame: 3 |
| RNA recognition motif family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| Match: gi|217069866|gb|ACJ83293.1| |
score: 254 |
e-value: 1e-65 |
Identity: 68.87% |
Span: 624bp (64.9%) |
Frame: 3 |
| unknown [Medicago truncatula] |
| Match: gi|145323766|ref|NP_001077472.1| |
score: 246 |
e-value: 4e-63 |
Identity: 65.99% |
Span: 585bp (60.8%) |
Frame: 3 |
| small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative [Arabidopsis thaliana] |
| Match: gi|168028479|ref|XP_001766755.1| |
score: 237 |
e-value: 2e-60 |
Identity: 60% |
Span: 690bp (71.7%) |
Frame: 3 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162681964|gb|EDQ68386.1| predicted protein [Physcomitrella... |
| Match: gi|217072842|gb|ACJ84781.1| |
score: 232 |
e-value: 4e-59 |
Identity: 57.45% |
Span: 672bp (69.9%) |
Frame: 3 |
| unknown [Medicago truncatula] |
| Match: gi|1050840|emb|CAA90282.1| |
score: 232 |
e-value: 5e-59 |
Identity: 57.38% |
Span: 681bp (70.8%) |
Frame: 3 |
| U1snRNP-specific protein, U1A [Solanum tuberosum] |
| Match: gi|225437410|ref|XP_002270967.1| |
score: 230 |
e-value: 2e-58 |
Identity: 57.56% |
Span: 681bp (70.8%) |
Frame: 3 |
| PREDICTED: hypothetical protein [Vitis vinifera] |
|
| 252 lower scoring hits censored -- only 25 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 5 hits recorded |
| Match: At2G30260.1 |
score: 296 |
e-value: 1e-80 |
Identity: 71.79% |
Span: 690bp (71.7%) |
Frame: 3 |
| Symbols: U2B'' | U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding | chr2:12912634-12914511 REVERSE |
| Match: At1G06960.1 |
score: 284 |
e-value: 6e-77 |
Identity: 69.4% |
Span: 690bp (71.7%) |
Frame: 3 |
| small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | chr1:2135929-2137532 FORWARD |
| Match: At1G06960.2 |
score: 283 |
e-value: 8e-77 |
Identity: 69.4% |
Span: 690bp (71.7%) |
Frame: 3 |
| small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | chr1:2135929-2137532 FORWARD |
| Match: At1G06960.3 |
score: 246 |
e-value: 2e-65 |
Identity: 65.99% |
Span: 585bp (60.8%) |
Frame: 3 |
| small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | chr1:2135981-2137532 FORWARD |
| Match: At2G47580.1 |
score: 206 |
e-value: 2e-53 |
Identity: 53.97% |
Span: 678bp (70.5%) |
Frame: 3 |
| Symbols: U1A | U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding | chr2:19524299-19525756 FORWARD |
|
| swissprot [blastx] | Showing best 16 hits recorded |
| Match: Q9CQI7 |
score: 206 |
e-value: 2e-52 |
Identity: 54.78% |
Span: 678bp (70.5%) |
Frame: 3 |
| U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=2 SV=1 |
| Match: P43332 |
score: 204 |
e-value: 7e-52 |
Identity: 53.36% |
Span: 669bp (69.5%) |
Frame: 3 |
| U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster GN=snf PE=1 SV=1 |
| Match: P08579 |
score: 203 |
e-value: 1e-51 |
Identity: 54.35% |
Span: 678bp (70.5%) |
Frame: 3 |
| U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1 |
| Match: Q54J05 |
score: 181 |
e-value: 7e-45 |
Identity: 42.98% |
Span: 678bp (70.5%) |
Frame: 3 |
| U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 |
| Match: O74968 |
score: 128 |
e-value: 5e-29 |
Identity: 35.11% |
Span: 669bp (69.5%) |
Frame: 3 |
| U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces pombe GN=usp102 PE=1 SV=1 |
| Match: Q2KIR1 |
score: 110 |
e-value: 2e-23 |
Identity: 61.39% |
Span: 303bp (31.5%) |
Frame: 3 |
| U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2 SV=1 |
| Match: Q06AA4 |
score: 110 |
e-value: 2e-23 |
Identity: 61.39% |
Span: 303bp (31.5%) |
Frame: 3 |
| U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2 SV=1 |
| Match: P09012 |
score: 110 |
e-value: 2e-23 |
Identity: 61.39% |
Span: 303bp (31.5%) |
Frame: 3 |
| U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1 SV=3 |
| Match: Q62189 |
score: 109 |
e-value: 2e-23 |
Identity: 66.67% |
Span: 279bp (29.0%) |
Frame: 3 |
| U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2 SV=3 |
| Match: P45429 |
score: 107 |
e-value: 9e-23 |
Identity: 60.82% |
Span: 291bp (30.2%) |
Frame: 3 |
| U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa PE=2 SV=1 |
| Match: P09012 |
score: 102 |
e-value: 5e-21 |
Identity: 48.21% |
Span: 330bp (34.3%) |
Frame: 3 |
| U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1 SV=3 |
| Match: Q06AA4 |
score: 102 |
e-value: 5e-21 |
Identity: 48.21% |
Span: 330bp (34.3%) |
Frame: 3 |
| U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2 SV=1 |
| Match: Q2KIR1 |
score: 102 |
e-value: 4e-21 |
Identity: 48.21% |
Span: 330bp (34.3%) |
Frame: 3 |
| U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2 SV=1 |
| Match: Q62189 |
score: 102 |
e-value: 5e-21 |
Identity: 48.21% |
Span: 330bp (34.3%) |
Frame: 3 |
| U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2 SV=3 |
| Match: P45429 |
score: 98.2 |
e-value: 7e-20 |
Identity: 57.14% |
Span: 231bp (24.0%) |
Frame: 3 |
| U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa PE=2 SV=1 |
| Match: Q7LL14 |
score: 80.9 |
e-value: 1e-14 |
Identity: 54.65% |
Span: 258bp (26.8%) |
Frame: 3 |
| Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe GN=SPBC8D2.09c PE=2 SV=1 |
|
