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This unigene is from an out-of-date build, Coffea canephora #1
It has been superseded by SGN-U614791 in the current build, Coffea canephora #3

Unigene SGN-U305637

Unigene Basic Information

Unigene ID:	SGN-U305637
Unigene Build:	Coffea canephora #1
Date:	2005-04-24
Organism:	C.canephora
Alternative ID:	130374
mRNA sequence:	Length: 309 bp

>SGN-U305637 Coffea canephora #1 (1 members)
GGAGTGAAAGATGCACCTGCATTGAAATTAGCAGATATTGGAATTGCTTTGGGAATTGCAGGAACTGACGTTGCAAAGGACGCTTCTGAC
ATGGTTCTGGCATACGATAATTTCAGCACAATTGTTGCTGCTGTTGGTGAAGGCAGATCCATTTACAACAATATGAAGGCATTCATCAGG
TACATGATTTCCTCAAACATTGGTGAGGTGTTCTCCATTTTTCTGACAGCAGCTTTAGGTATCCCTGAAGGTCTTATCCCGGTTCAGCTT
CTGTGGGTCAACCTGGTAACTGATGGACCACCAGCAACA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Coffea canephora	cccwc22w	Whole Cherry 22 week after pollination	11656	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E686082
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 5 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|1742951\|emb\|CAA70946.1\|	280	2.3e-74	77.72	552 bp (178.6%)	1
Description:	Ca2+-ATPase [Arabidopsis thaliana]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005524 ATP binding
GO:0016020 membrane
GO:0015992 proton transport
GO:0015662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0006812 cation transport

Protein prediction analysis (1)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P111757 (184 Aa)

ICPELGVFGSNEDISAATLSRKNFMDLHPPQSHYRRLGGLLFSGAEQTGLATNIQAAHIMGEVVSMTGDGVKDAPALKLADIGIALGIAG
TDVAKDASDMVLAYDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVFSIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPD
KDVM

SignalP predicts non-secretion with a score of 0.033

IPR001757 ATPase, E1-E2 type
IPR000695 H+ transporting ATPase, proton pump

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	66	ATPase_E1-E2	181
2	22193	ATPase-IIIB_Mg Flippase ATPase-IIIA_H ATPase-IB_hvy E1-E2_ATPase_reg ATPase-IIA2_Ca ATPase_E1-E2 ATPase-IB1_Cu Cation_ATPase_C Heavy_met_ATPase Hydrolase ATPase-IIB_Ca Calcium_ATPase ATPase-IID_KNa ATPase-IA_K+	47
5	57463	ATPase-IIIB_Mg Flippase ATPase-IIIA_H ATPase-IB_hvy E1-E2_ATPase_reg ATPase-IIA2_Ca SPP_like_arch ATPase_E1-E2 ATPase-IB1_Cu Cation_ATPase_C Heavy_met_ATPase Hydrolase ATPase-IIB_Ca Calcium_ATPase ATPase-IID_KNa ATPase-IA_K+	13

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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