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Unigene SGN-U202491

Unigene Basic Information

Unigene ID:	SGN-U202491
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	202491
mRNA sequence:	Length: 434 bp

>SGN-U202491 Capsicum annuum #1 (1 members)
CTTAATAAGTACTGGTTTCCAGTTTCTCGTATGCCTAAAAGAGGAGGAGATTGGCCTACAGTGGATGACATGGTCAAGCAGAATCAACGT
CTTGTAGTCTTCACCTCTAAATCATCAAAGGAGGCTTCTGAGGGCATTGCTTACGAGTGGAGATACGTTGTAGAAAACCAATATGGAAAC
GGCGGGATGAATGTTGGTTCCTGTGGAAGTCGTTCTGAATCATCTGTTATGAGTACATCTTCAGTATCTTTGGTTCTGCAGAATTATTTT
CCTGACAATCCCAACAAAACAGAATCTTGTATGGATAATTCTGCTCCACTGGTTGCAATGACGAAGACTTGCTTCCAACCAGCTGGCAAT
CGGTGGCCAAACTTTATTGCTGTTGATTTTCATCAGAAAAGTGATGGTGGTGGAGCTCCAGAAGCTGTAGATGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|25407778\|pir\|\|D85436	199.1	9.7e-51	70.14	432 bp (99.5%)	1
Description:	gi\|25407778\|pir\|\|D85436 MAP3K-like protein kinase [imported] - Arabidopsis thaliana gi\|4006878\|…
arabidopsis	blastx	At1g49740.1	188.7	8.8e-49	65.28	432 bp (99.5%)	1
Description:	At1g49740.1 68408.m05109 expressed protein similar to MAP3K-like protein kinase GB:CAB16796 GI:…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P156571 (145 Aa)

LNKYWFPVSRMPKRGGDWPTVDDMVKQNQRLVVFTSKSSKEASEGIAYEWRYVVENQYGNGGMNVGSCGSRSESSVMSTSSVSLVLQNYF
PDNPNKTESCMDNSAPLVAMTKTCFQPAGNRWPNFIAVDFHQKSDGGGAPEAVDG

SignalP predicts non-secretion with a score of 0.111

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36954 (145 Aa)

LNKYWFPVSRMPKRGGDWPTVDDMVKQNQRLVVFTSKSSKEASEGIAYEWRYVVENQYGNGGMNVGSCGSRSESSVMSTSSVSLVLQNYF
PDNPNKTESCMDNSAPLVAMTKTCFQPAGNRWPNFIAVDFHQKSDGGGAPEAVDG

SignalP predicts non-secretion with a score of 0.111

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1411	PI_PLC_Xdom	13
2	23349	PI_PLC_Xdom	13
5	57579	PI_PLC_Xdom	12
1.1	102476	Phosphatidylinositol-specific phospholipase C X region - Molecular Function: phospholipase C activity (GO:0004629) - Biological Process: signal transduction (GO:0007165) - Biological Process: intracellular signaling cascade (GO:0007242)	13
2	119642	Phosphatidylinositol-specific phospholipase C X region - Molecular Function: phospholipase C activity (GO:0004629) - Biological Process: signal transduction (GO:0007165) - Biological Process: intracellular signaling cascade (GO:0007242)	13
5	129976	Phosphatidylinositol-specific phospholipase C X region - Molecular Function: phospholipase C activity (GO:0004629) - Biological Process: signal transduction (GO:0007165) - Biological Process: intracellular signaling cascade (GO:0007242)	13

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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