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Unigene SGN-U212303

Unigene Basic Information

Unigene ID:	SGN-U212303
Unigene Build:	Petunia hybrida #1
Date:	2004-03-30
Organism:	P.hybrida
Alternative ID:	212303
mRNA sequence:	Length: 330 bp

>SGN-U212303 Petunia hybrida #1 (1 members)
TCAAAGTGAGCTGAAACAGTTAAGTCCAGGTTATTTGGACTTCACATATACTAGCAATTATGTTTTTTGACGGATATGGATATCATGGAA
CATCATTTGAGCAAACATACCGCTGTTACCCTGCTTCCTTCATTGATAAGCCACAGTTAGAGAATGGTGACAAAATTATAATGCCCCCCT
CTGCCCTGGATCGTCTAGCATCACTTCATATTGATTACCCAATGTTGTTTGAGCTTCGAAACACTTCAACTGACCGTGGTTCTCACTGTG
GGGTTCTGGAGTTTATTGCAGAAGAGGGCATGATATACATGCCTTACTGGATGATGGAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Petunia x hybrida	Petunia-PP	all floral organs anthesis	1824	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18399646\|ref\|NP_565504.1\|	174.9	2.5e-43	87.78	270 bp (81.8%)	3
Description:	ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] >gi79322611\|ref\|NP_0010…
arabidopsis	blastx	At2g21270.1	174.9	5.9e-45	87.78	270 bp (81.8%)	3
Description:	At2g21270.1 68409.m02293 ubiquitin fusion degradation (UFD) protein, putative similar to SP\|P70…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0006511 ubiquitin-dependent protein catabolism

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P207698 (102 Aa)

VQVIWTSHILAIMFFDGYGYHGTSFEQTYRCYPASFIDKPQLENGDKIIMPPSALDRLASLHIDYPMLFELRNTSTDRGSHCGVLEFIAE
EGMIYMPYWMME

SignalP predicts non-secretion with a score of 0.415

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P44869 (110 Aa)

QSELKQLSPGYLDFTILAIMFFDGYGYHGTSFEQTYRCYPASFIDKPQLENGDKIIMPPSALDRLASLHIDYPMLFELRNTSTDRGSHCG
VLEFIAEEGMIYMPYWMMEX

SignalP predicts non-secretion with a score of 0.209

IPR004854 Ubiquitin fusion degradation protein UFD1

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	566	UFD1	32
2	23251	UFD1	14
5	57442	UFD1	13
1.1	102147	Ubiquitin fusion degradation protein UFD1 - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	20
2	120674	Ubiquitin fusion degradation protein UFD1 - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	8
5	130939	Ubiquitin fusion degradation protein UFD1 - Biological Process: ubiquitin-dependent protein catabolism (GO:0006511)	8

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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