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Unigene SGN-U297717

Unigene Basic Information

Unigene ID:	SGN-U297717
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	297717
mRNA sequence:	Length: 395 bp

>SGN-U297717 Solanum tuberosum #4 (1 members)
CAATGTCTCTTATGATTATCGATGCTTTTCCAATATCATATTCTTCCTATGAGCAAAGTACTAATTACAATTACTACTATACTACTCAAA
TACATCCAGAATTGAGTTACTCTGTACACAACTCTGTTGAGCCAAAACTAATCCAGTATGCAAATTGGTCCTAATTCATTGGAAACAAGA
ACCATAGTTTCTTGTTATACCAAAGAACAGGATGACACTCAGTTTGATGAATATGATCCAACCCCTTATGGTGGTGGTATTGATATGGCT
CAAATCTATGGAAAACCCCTTCCTCCCTCGGAATGAAATATGTTATCCTCCTTCGAATCCAAGTCTAATGGACTTCAATTACATGGTTTC
GACTATGGATCAAATAATTCGCCTATGTAAACCTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TBSK	Tuber Skin	4812	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P240027 (69 Aa)

FLVIPKNRMTLSLMNMIQPLMVVVLIWLKSMENPFLPRNEICYPPSNPSLMDFNYMVSTMDQIIRLCKP

SignalP predicts secretion with a score of 0.462

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P95617 (131 Aa)

MSLMIIDAFPISYSSYEQSTNYNYYYTTQIHPELSYSVHNSVEPKLIQYANGPNSLETRTIVSCYTKEQDDTQFDEYDPTPYGGGIDMAQ
IYGKXPSSLGMKYVILLRIKSNGLQLHGFDYGSNNSPSKPX

SignalP predicts non-secretion with a score of 0.148

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	313	Nucleoplasmin Hs1/Cortactin	51
2	26149	Nucleoplasmin	5
5	63057		3
1.1	101472	Prenylated rab acceptor PRA1	112
2	125563		3
5	136232		3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U265041	Solanum tuberosum #3

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