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Unigene SGN-U626265

Unigene Basic Information

Unigene ID:	SGN-U626265
Unigene Build:	Coffea canephora #3
Date:	2010-04-15
Organism:	C.canephora
Alternative ID:	none
mRNA sequence:	Length: 443 bp

>SGN-U626265 Coffea canephora #3 (1 members)
GTAGTTTCAGAGATCACAAATGGATGACTGGTCCCAGCTTCCATATGATGTCATTCAAATGATTGCAATTCGATTAGATGCTGTTGAAGA
TTTTCTAGCATTTTCTGCTGTTTGTAGTTCTTGGAGATCATTTTACGTGACCAAAAAATGGACTCCAGGTCCTCAAGTGCCTTGGCTAAT
GCTCTCTGATAACGAAAACAGTAACATGAGGAGTTTCTTTAGCTTGTACAGAGATAAGGTATACGAATTGGAGCTGCCTGAAGCTTGTGG
TCGGAGGTGCTGGGGATCCTCTGATGGGTGGCTTGTAACTATAGGCAGTGACCTCGAAATCCATCTTTTGAATGCTTTTACCAGAGACCA
AATAAGACTGCCTGCAGCAAGTACATTCCGGTTCCTCTTCAACGTGGCAGTTGATTGGTATCAGTTGATAGAGAAGGCCATTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Coffea canephora	cccs46w	Endosperm and perisperm 46 week after pollination	10903	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|225462773\|ref\|XP_002263708.1\|	130	7e-29	51.67	357 bp (80.6%)	3
Description:	PREDICTED: hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At2G33200.1	65.5	1e-11	34.45	351 bp (79.2%)	3
Description:	F-box family protein \| chr2:14076618-14077748 FORWARD
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P793014 (146 Aa)

FQRSQMDDWSQLPYDVIQMIAIRLDAVEDFLAFSAVCSSWRSFYVTKKWTPGPQVPWLMLSDNENSNMRSFFSLYRDKVYELELPEACGR
RCWGSSDGWLVTIGSDLEIHLLNAFTRDQIRLPAASTFRFLFNVAVDWYQLIEKAI

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P776527 (142 Aa)

MDDWSQLPYDVIQMIAIRLDAVEDFLAFSAVCSSWRSFYVTKKWTPGPQVPWLMLSDNENSNMRSFFSLYRDKVYELELPEACGGGAGGS
SDGWLVTIGSDLEIHLLNAFTRDQIRLPAASTFRFLFNVAVDWYQLIEKAIX

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U358419	Coffea canephora #2

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