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Unigene SGN-U591983

Unigene Basic Information

Unigene ID:	SGN-U591983
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 289 bp

>SGN-U591983 Tomato 200607 #2 (1 members)
ATAAATCAAAGAGAAAAAATTAAGATTTTTTTTTCAAAAAAAAAAAAAACATATGGGGAAAGCACGTATAATAGGAATTGGAATGGATTA
TTCAGCAACAAGCAAAATAGCTCTAAAATGGGCAATTGATAATTTAATTGAAGAAGGTGACACAATTATTATTATTCATGTTGTTTCTTC
TAACGTTGAACCAACCAGTAACCTACTCTTTGAAGACACTGAATCACCTTTGATACCTTAGGATAGACTTAAACGAAATAAAGTTGAATC
ACTAAATAGCTTTTCTTCT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tfhs1	Solanum lycopersicum heat shock protein

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E393262
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (1)

TOM1 data for Unigene: SGN-U591983

SGN-C	SGN-E	Dir.	Chip	SpotID	Order	Info
SGN-C181998	SGN-E393262	Unknown	TOM1	1-1-5.3.10.16TUS38G20	Order Array	TMD

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18396497\|ref\|NP_566198.1\|	89.7	7e-17	62.9	186 bp (64.4%)	2
Description:	universal stress protein (USP) family protein / early nodulin ENOD18 family protein [Arabidopsi…
arabidopsis	blastx	At3G03270.2	89.7	4e-19	62.9	186 bp (64.4%)	2
Description:	universal stress protein (USP) family protein / early nodulin ENOD18 family protein \| chr3:762…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P723761 (78 Aa)

IKEKKLRFFFQKKKKHMGKARIIGIGMDYSATSKIALKWAIDNLIEEGDTIIIIHVVSSNVEPTSNLLFEDTESPLIP

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P682566 (62 Aa)

MGKARIIGIGMDYSATSKIALKWAIDNLIEEGDTIIIIHVVSSNVEPTSNLLFEDTESPLIP*

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U314284	Tomato 200607 #1

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