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Unigene SGN-U205440

Unigene Basic Information

Unigene ID:	SGN-U205440
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	205440
mRNA sequence:	Length: 192 bp

>SGN-U205440 Capsicum annuum #1 (1 members)
AGAGAATTTTGGGTTATGGGTGGATATGGTGAGTCGAGGACTGTCTCCGGTGTGTTTCCTGTGGATCAATATTATAGGGATGCTGTAGTG
ATGGAAATGAAGAATGGTGGTGGTAAGTGGAGGGAGCTTGGTGATATGTGGGAAGAAGGGGAAAGGTGGAAGCCTGGTAAGATTGTGGTG
GTCGATGATGGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E495085
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At4g03030 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|1022809\|gb\|AAA79706.1\|	97.83	4.2e-20	70.77	192 bp (100.0%)	1
Description:	OR23peptide [Arabidopsis thaliana]
arabidopsis	blastx	At4g03030.1	97.83	1e-21	70.77	192 bp (100.0%)	1
Description:	At4g03030.1 68411.m00372 Kelch repeat containing F-box protein family
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (3)

Prediction based on longest six frame method

>SGN-P159589 (64 Aa)

PIIDHHNLTRLPPFPFFPHITKLPPLTTTILHFHHYSIPIILIHRKHTGDSPRLTISTHNPKFS

SignalP predicts non-secretion with a score of 0.162

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39816 (64 Aa)

REFWVMGGYGESRTVSGVFPVDQYYRDAVVMEMKNGGGKWRELGDMWEEGERWKPGKIVVVDDG

SignalP predicts non-secretion with a score of 0.148

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P159588 (64 Aa)

REFWVMGGYGESRTVSGVFPVDQYYRDAVVMEMKNGGGKWRELGDMWEEGERWKPGKIVVVDDG

SignalP predicts non-secretion with a score of 0.148

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	63	Kelch_rep	190
2	25239	F-box Kelch_rep	6
5	60800		4
1.1	101409	Galactose oxidase central	248
2	122543	Galactose oxidase central Cyclin-like F-box Kelch repeat	5
5	135869		3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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