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Unigene SGN-U199903

Unigene Basic Information

Unigene ID:	SGN-U199903
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199903
mRNA sequence:	Length: 455 bp

>SGN-U199903 Capsicum annuum #1 (1 members)
CTAAAACACCTCATGGTTAGAGCTTTCTGACTGTTTGCATCGTTTTGTCATTTGATGTTGTTCTTTGGCTGTTATGCAGGAACGAAAACA
ATCATATCTTTATTAAGTAGTTAATCGTTGCTTCAGTTGAAAAAAGAAATTCTTCTGCATTTACAACAGAATTATCATGACCTCAAACTG
CATTCCAGAATATGAGTTGTAAAAATGAGATCATTACTTAGAATTTTATGTCATTTAGTGAGTGTGTCAATGTTAGAAGTGTTTTCATCG
TAATTTTGAAGGTGTGTGTTAATTCTCAAGGAGGTAGCGGTATGGTCTGCGTACATCCTACCCTCCCCAGACCCTACTTTGTGGGAATAC
ACTGGGTTGGTGGTGGTGGTTGTGGTGTTAATCCTCAAGGAAGACGAGATGTAAAATCTCCTTTTATGTAGCAGCGATCATCATTTCCCT
ATCAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E502380
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34454 (33 Aa)

MVWYILPSPDPTLWEYTGLVVVVVVLILKEDEM

SignalP predicts non-secretion with a score of 0.28

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P153921 (69 Aa)

NFMSFSECVNVRSVFIVILKVCVNSQGGSGMVCVHPTLPRPYFVGIHWVGGGGCGVNPQGRRDVKSPFM

SignalP predicts secretion with a score of 0.546

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	# Members
1.2	2076	9
2	29817	2
5	64495	2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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