Sol Genomics Network

Unigene SGN-U203916

Unigene Basic Information

Unigene ID:	SGN-U203916
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	203916
mRNA sequence:	Length: 561 bp

>SGN-U203916 Capsicum annuum #1 (1 members)
GTCTCCAAAAACGTGATTGTTTCGTTCTTATGCCAACTGGAGGTGGTAAAAGTCTTTGCTACCAGCTTCCAGCGATTGTTCAACCTGGCG
TTATGATTGTTGTATCCCCCCTACTTTCGCTAATTCAGGATCAGATAATCACCCTTAACCTCAAGTTTGGGATACCAGCAACCTTTTTAA
ATTCGCAACAAAATCCATCACAAGCTGCAGCTGTACTACAAGAATTAAGGAAAGATATTCCATCTTGCAAGCTCCTCTATGTAACTCCAG
AGAGGATAGCTGGAAATTTGTCATTTCAAGAAACCTTAAAATGGACAATTGGCTGGTTTTGTTATCGATGAGGCTCACTGTGTGAGCCAA
TGGGGACATGACTTTCGCCCCAGATTATAGGGTATTAGGATGTCTTAAGCAAAATTTTCCAGATGTTCCAGTGATGGCATTAACTGCCAC
AGGAACCCACGCAGTCCGTCAAGATATCTTGAGTGCTTTAAGAATTCCTCGTGCCCTTGTCCTTCAAACCAGCTTTGATAGATCCAATTT
AAAGTATGAAGTAAACGGAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E508305
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	24	DEAD	331
2	23275	ATP_RecQ Helicase_C DEAD RecQ	14
5	60445	ATP_RecQ Helicase_C DEAD RecQ DEAH_box	5
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	119906	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026) ATP-dependent DNA helicase RecQ - Biological Process: DNA metabolism (GO:0006259) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	11
5	130570	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026) ATP-dependent DNA helicase RecQ - Biological Process: DNA metabolism (GO:0006259) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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