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Unigene SGN-U203157

Unigene Basic Information

Unigene ID:	SGN-U203157
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	203157
mRNA sequence:	Length: 449 bp

>SGN-U203157 Capsicum annuum #1 (1 members)
CCCGGGCTGAGGAATTCGCACGAGGGTAACAGAGAGCTTTAACAAAGTCCTACAACTCAAGGATATTTTTTGCTTGCTCAAGAGTAGCGT
AACACTTTCACTACCAACAGTCATTGGTTTCTTGAATGGTCTAGGGGAAGGTGGACAACAAACTCCATTTTTGTACTTCTTGAAGGCTCG
ACTTCACTACAACAAAGACAACTTTGCTATTGTAATGCTTATTGGCTACAGTGCAGCAGCGATTGGCCAGTTATTCTTGATGCCTCGGTT
GGCCCCTATTATGGGAGAGGAGGCAATTCTCTCTTTATCCCTCATCGCGCAATTTATAAATATGCTAATTGATAGCATTGCATGGGCAGT
CTGGGTTCCTTATGTTGCTAATTTGTTGCCTATCATTGCCTTCCTAACAAGACCTGCTTTACAAACCATTGTTTCAAAACAAGTTGGGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E508497
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15227341\|ref\|NP_179291.1\|	81.65	2.2e-15	44.21	285 bp (63.5%)	2
Description:	gi\|15227341\|ref\|NP_179291.1\| tetracycline transporter protein -related [Arabidopsis thaliana] g…
arabidopsis	blastx	At2g16990.1	81.65	1.6e-16	44.21	285 bp (63.5%)	2
Description:	At2g16990.1 68409.m01763 tetracycline transporter protein -related
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P157250 (146 Aa)

GIRTRVTESFNKVLQLKDIFCLLKSSVTLSLPTVIGFLNGLGEGGQQTPFLYFLKARLHYNKDNFAIVMLIGYSAAAIGQLFLMPRLAPI
MGEEAILSLSLIAQFINMLIDSIAWAVWVPYVANLLPIIAFLTRPALQTIVSKQVG

SignalP predicts non-secretion with a score of 0.304

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P37599 (150 Aa)

RAEEFXTRVTESFNKVLQLKDIFCLLKSSVTLSLPTVIGFLNGLGEGGQQTPFLYFLKARLHYNKDNFAIVMLIGYSAAAIGQLFLMPRL
APIMGEEAILSLSLIAQFINMLIDSIAWAVWVPYVANLLPIIAFLTRPALQTIVSKQVGX

SignalP predicts non-secretion with a score of 0.261

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1040	Drug_resist Dgal_transporter GlpT_transporter NO3_transporter Bnzte_transport	18
2	23404	Drug_resist Dgal_transporter GlpT_transporter NO3_transporter Bnzte_transport	13
5	58302	Drug_resist Dgal_transporter GlpT_transporter NO3_transporter Bnzte_transport	9
1.1	102517	Major facilitator superfamily MFS_1	13
2	120382	Major facilitator superfamily MFS_1	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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