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Unigene SGN-U199529

Unigene Basic Information

Unigene ID:	SGN-U199529
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199529
mRNA sequence:	Length: 394 bp

>SGN-U199529 Capsicum annuum #1 (1 members)
TTCTAAGTTTTGGGCTGAAAAAGCTAGTCCTTGGCAGCAGGATCTGCAGTATGATTCTGTCGATTCACTTCACCATTTAAAGCATTTTGT
AGCAAGAAGGGAAGCCCCTTGGAAGATAGATGGTGAATCAACAGGAGTCTCCTCCAAACTAAAGTTACTTGAGCAGGAGCTACTGAATTT
GGAAAAAATTGGGAAGACAGATGTATCCAAGGTACCATCATCAACGCGGAAGCAGGTGAAGAGATACCAAGCTCTTGCAGGCAAGATCGA
TGATCTATGCAGAAGAATGGTAATTCTTGCCCTAAAAATTTAGTACATGGATTTGAAAGCTTGTTGCATGCATGCGAAGGGTTCTCTAAG
AATGGACAATATGTTGGTTTTCCTCAAGAAAAAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E498405
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g45900 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|29126359\|gb\|AAO66551.1\|	97.44	4.2e-20	62.37	279 bp (70.8%)	2
Description:	gi\|29126359\|gb\|AAO66551.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)]
arabidopsis	blastx	At3g45900.1	92.82	5.1e-20	69.41	252 bp (64.0%)	2
Description:	At3g45900.1 68410.m04600 expressed protein
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P153539 (119 Aa)

GKPTYCPFLENPSHACNKLSNPCTKFLGQELPFFCIDHRSCLQELGISSPASALMMVPWIHLSSQFFPNSVAPAQVTLVWRRLLLIHHLS
SKGLPFLLQNALNGEVNRQNHTADPAAKD

SignalP predicts non-secretion with a score of 0.046

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34085 (132 Aa)

SKFWAEKASPWQQDLQYDSVDSLHHLKHFVARREAPWKIDGESTGVSSKLKLLEQELLNLEKIGKTDVSKVPSSTRKQVKRYQALAGKID
DXMQKNGNSCPKNLVHGFESLLHACEGFSKNGQYVGFPQEKX

SignalP predicts non-secretion with a score of 0.043

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2027	DUF904 Phd_fam Myosin_tail HAP1_N Ez/rad/moesin DUF164	9
2	24893	DUF904 Phd_fam Myosin_tail HAP1_N Ez/rad/moesin DUF164	7
5	60973	DUF904 Phd_fam HAP1_N	4
1.1	101367	Kinesin motor region - Molecular Function: microtubule motor activity (GO:0003777) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: microtubule associated complex (GO:0005875) - Biological Process: microtubule-based movement (GO:0007018)	846
2	124741		3
5	135079		3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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