Sol Genomics Network

Unigene SGN-U199777

Unigene Basic Information

Unigene ID:	SGN-U199777
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199777
mRNA sequence:	Length: 518 bp

>SGN-U199777 Capsicum annuum #1 (1 members)
CTTCATCTTCTTTTCCATTCAAACAGTTTGATCTCAACACCACCTCCTGAGAGAGTTCCGATAAGAACACATCTTTCAGCTTACAGCACG
GACAAAGTAATATCAGCTATCAAGCATGAATTGGACCGTGGTGGCCGAGTTTTTTATGTCTTGCCCCGCATTAAGGGTCTTGAGGATGTT
ATGGAATTGTTAGAACAAGCATTTCCACGTGTTGAAATAGCTATTGCTCATGGAAAGCAATACTCAAAACAGCTTGAGGAAACTATGGAA
AGATTTGCACGGGGAGATATTAGAATTCTTATATGTACAAACATAGTAGAAAGTGGCCTTGATATTCAAAATGCAAACACAATCATCATT
CAAGATGTTCAGCAATTTGGACTTGCACAGTTGTATCAGCTGCGTGGAAGGGTTGGACGGGCGGATAAAGAAGCTCATGCACACTTATTT
TATCCTGACAAATCACTTCTTTCTGACCATGCACTAGAGAGGCTTGCTGCTCTTGAAGAGTGCTGTGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E512965
[Show Image]

Markers Information (1)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2084	Helicase_C Cas3_core DEAD RecG Mfd	9
2	25659	Helicase_C Cas3_core DEAD RecG Mfd	6
5	62419	TRCF CarD Helicase_C Cas3_core DEAD PriA RecQ DUF771 RecG Mfd	3
1.1	102914	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026) Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524)	9
2	121572	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	6
5	134945	Transcription factor CarD - Molecular Function: transcription factor activity (GO:0003700) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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