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Unigene SGN-U199940

Unigene Basic Information

Unigene ID:	SGN-U199940
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199940
mRNA sequence:	Length: 433 bp

>SGN-U199940 Capsicum annuum #1 (1 members)
GTCTACAGGTTGTGAACACTATGTCGGAGGAACTTTCTAATGTTGCTATAGAAGCCTCAGTTTGGGATTTGGAAGGAGAATGTCCATACT
ATAAAACCTCTGAAAAACTTACTGTGCCACCCAAAAAAGTTGTACCTACATTTGAGATGAAGTATCCGAAGTCGAAGAATCCAAAGCCAG
TTTACTTTCTTCTTCTCAAACTCTATGATGTGTCCGATAATCGCATATACTCGAGGAACTTTTACTGGTTGCACCTAACAGGTGATGATT
ACAAGCTTTTGGAGCCATTCAAGGAGAGAAGACCACCTCTCAAAATAACTTCTCTAACCTTTATTAAAGGGTCGAGCTATGAAATGCGCT
TGCATATCCAGAACACATCAAAGAAGCCAGATTCTAACACTCCACTGTATAGAAATAGCTTTATCAGAAGAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E508689
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At1g09010 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|28195699\|gb\|AAO27794.1\|	210.3	4.2e-54	69.93	429 bp (99.1%)	3
Description:	glycosyl hydrolase [Gossypium hirsutum]
arabidopsis	blastx	At1g09010.1	166	6e-42	60.63	381 bp (88.0%)	3
Description:	At1g09010.1 68408.m00902 glycoside hydrolase family 2 low similarity to mannosidase [gi:5359712…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P153960 (143 Aa)

LQVVNTMSEELSNVAIEASVWDLEGECPYYKTSEKLTVPPKKVVPTFEMKYPKSKNPKPVYFLLLKLYDVSDNRIYSRNFYWLHLTGDDY
KLLEPFKERRPPLKITSLTFIKGSSYEMRLHIQNTSKKPDSNTPLYRNSFIRR

SignalP predicts non-secretion with a score of 0.038

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34490 (144 Aa)

LQVVNTMSEELSNVAIEASVWDLEGECPYYKTSEKLTVPPKKVVPTFEMKYPKSKNPKPVYFLLLKLYDVSDNRIYSRNFYWLHLTGDDY
KLLEPFKERRPPLKITSLTFIKGSSYEMRLHIQNTSKKPDSNTPLYRNALSEEX

SignalP predicts non-secretion with a score of 0.038

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2461	Glyco_hydro_2Ig Glyco_hydro_2TIM Glyco_hydro_2SB	7
2	24860	Glyco_hydro_2Ig Glyco_hydro_2TIM Glyco_hydro_2SB	7
5	58900	Glyco_hydro_2Ig Glyco_hydro_2TIM Glyco_hydro_2SB	7
1.1	103170	Glycoside hydrolase family 2 sugar binding - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycoside hydrolase family 2 immunoglobulin-like beta-sandwich - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Galactose-binding like	7
2	120898	Galactose-binding like Glycoside hydrolase family 2 immunoglobulin-like beta-sandwich - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycoside hydrolase family 2 sugar binding - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	7
5	135628		3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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