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Unigene SGN-U200107

Unigene Basic Information

Unigene ID:	SGN-U200107
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200107
mRNA sequence:	Length: 414 bp

>SGN-U200107 Capsicum annuum #1 (1 members)
CAATTCTGAGGATGTTAGAAGTTGAGCATCCAGCTGCTAAGGTTCTTGTTGAGTTGGCTGAACTCCAAGATCGAGAAGTTGGTGATGGAA
CAACCTCAGTTGTTATTATAGCTGCAGAATTACTTAAGGGAGCAAATGAGTTGGTGAGGCACAAAATTCACCCAACCTCGATAATCAGTG
GATATAGGCTGCCAATGAGGGAAGCATGCAAATATGTCGAAGAAAAATTGGCTGTTAAGGTCGATAAGCTTGGAAAAGATTCTCTTATAA
ACTGTGCCAAGACAAGCATGTCGTCAAAGTTAATAGCAGATGACAGTGACTTCTTTGCTAATATGGTTGTTGAAGCAGTACAGGCTGTCC
AGATGAGTAATGTCAGGGGCGAAATCAAATATCCTATAAAGGGTATTAATTTAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E504778
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g20050 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|24371053\|dbj\|BAC22124.1\|	236.9	4.3e-62	87.59	411 bp (99.3%)	3
Description:	t-complex polypeptide 1 [Bruguiera sexangula]
arabidopsis	blastx	At3g20050.1	228	1.2e-60	84.67	411 bp (99.3%)	3
Description:	At3g20050.1 68410.m02295 T-complex protein 1, alpha subunit/chaperonin identical to SWISS-PROT:…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005524 ATP binding
GO:0051082 unfolded protein binding
GO:0006457 protein folding

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P154133 (137 Aa)

ILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIIAAELLKGANELVRHKIHPTSIISGYRLPMREACKYVEEKLAVKVDKLGKDSLIN
CAKTSMSSKLIADDSDFFANMVVEAVQAVQMSNVRGEIKYPIKGINL

SignalP predicts non-secretion with a score of 0.075

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34653 (138 Aa)

ILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIIAAELLKGANELVRHKIHPTSIISGYRLPMREACKYVEEKLAVKVDKLGKDSLIN
CAKTSMSSKLIADDSDFFANMVVEAVQAVQMSNVRGEIKYPIKGINLX

SignalP predicts non-secretion with a score of 0.075

IPR002194 Chaperonin TCP-1

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	86	Cpn60/TCP-1	147
2	22101	Cpn60/TCP-1 Chaperonin_TCP-1	67
5	57156	Chaprnin_Cpn60 Cpn60/TCP-1 Chaperonin_TCP-1	16
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118577	GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	50
5	130313	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) Chaperonin TCP-1	11

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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