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Unigene SGN-U200183

Unigene Basic Information

Unigene ID:	SGN-U200183
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200183
mRNA sequence:	Length: 402 bp

>SGN-U200183 Capsicum annuum #1 (1 members)
ACCAAATTCTCCAGCTTTTGCCATACTGAAAAAAATACAGAGAAAAAAGTCATGGCAACAGCTTGCTTATCTTCTTCTTGTTGGAGCTTA
ACTACAAAATTCAACACCCTTTCTCTCAATGGACCAAATTCCAATGCTGATGCATTAAGCCATCTTAGCTTTTCTGCTAACACTTCACTT
AATCTTTTCTCTAAAGGGACTGTTTCACTGACTCCAGTGCAAGTGCCATACCGCCGTCCCATCGTCTGTGAAGCTGCTCCTGCAAAGAAA
GCGGATTCTGCAGCCAAAAGGGCAAGGCAAGCTGAAAAGAGGCGACTTTACAACAAAGCGAAAAAATCTGAAGTCAAGACTCGGATTAAG
AAAGTTTTGGAAGGATTGGACAGGTTGAAGAAGAAAACCGAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E507749
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g15190 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	At3g15190.1	64.31	2e-11	55.47	339 bp (84.3%)	1
Description:	At3g15190.1 68410.m01724 chloroplast 30S ribosomal protein S20, putative contains Pfam profile:…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34726 (134 Aa)

PNSPAFAILKKIQRKKSWQQLAYLLLVGALTTKFNTLSLNGPNSNADALSHLSFSANTSLNLFSKGTVSLTPVQVPYRRPIVCEAAPAKK
ADSAAKRARQAEKRRLYNKAKKSEVKTRIKKVLEGLDRLKKKTD

SignalP predicts non-secretion with a score of 0.324

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P154211 (134 Aa)

TKFSSFCHTEKNTEKKVMATACLSSSCWSLTTKFNTLSLNGPNSNADALSHLSFSANTSLNLFSKGTVSLTPVQVPYRRPIVCEAAPAKK
ADSAAKRARQAEKRRLYNKAKKSEVKTRIKKVLEGLDRLKKKTD

SignalP predicts non-secretion with a score of 0.153

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3222	Ribosomal_S20p	5
2	26111	Ribosomal_S20p	5
5	64506		2
1.1	104383	Ribosomal protein S20 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein S20p - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) - Molecular Function: rRNA binding (GO:0019843)	4
2	123461	Ribosomal protein S20p - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) - Molecular Function: rRNA binding (GO:0019843) Ribosomal protein S20 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	4
5	135638		3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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