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Unigene SGN-U200317

Unigene Basic Information

Unigene ID:	SGN-U200317
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200317
mRNA sequence:	Length: 299 bp

>SGN-U200317 Capsicum annuum #1 (1 members)
GTTAAAGAAACAGGCTCCCATTAAGTCTTTGCAAGTGAGAGCAATAGCTTCTCCTGCTGAAGACACTGCTGGATTTGATGAAATGGTTTC
TGGCACCCAGCGGAAGTATTACATGCTAGGTGGTAAAGGAGGAGTTGGGAAGACAAGTTGTGCTGCTTCACTTGCTGTAAAATTTGCAAA
TAATGGTCATCCCACTTTACTAGTTTCAACCTGACCCCGCACACTCCTTAAGTGATCCTTTTGCTCAGGATTTGACTGGCGGGACACTAC
TGGCAGTTGAAGGCCTGCATTCTCCATTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E502155
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g10350 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|5824321\|emb\|CAB54139.1\|	118.2	2.6e-26	79.49	234 bp (78.3%)	2
Description:	ATPase [Solanum tuberosum]
arabidopsis	blastx	At3g10350.1	111.7	6.4e-26	69.88	249 bp (83.3%)	2
Description:	At3g10350.1 68410.m01120 ATPase -related similar to ATPase GB:CAB54139 [Solanum tuberosum], Pfa…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34856 (99 Aa)

LKKQAPIKSLQVRAIASPAEDTAGFDEMVSGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLQFQPDPAHSLSDPFAQDLTGGTLL
AVEGLHSPL

SignalP predicts non-secretion with a score of 0.086

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P154347 (70 Aa)

LKKQAPIKSLQVRAIASPAEDTAGFDEMVSGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLLVST

SignalP predicts non-secretion with a score of 0.086

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1214	ArsA_ATPase	16
2	23981	ArsA_ATPase	10
5	58044	ArsA_ATPase	10
1.1	102413	Anion-transporting ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: anion transport (GO:0006820) - Cellular Component: membrane (GO:0016020)	14
2	120432	Anion-transporting ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: anion transport (GO:0006820) - Cellular Component: membrane (GO:0016020)	9
5	130718	Anion-transporting ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: anion transport (GO:0006820) - Cellular Component: membrane (GO:0016020)	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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