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Unigene SGN-U200394

Unigene Basic Information

Unigene ID:	SGN-U200394
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200394
mRNA sequence:	Length: 255 bp

>SGN-U200394 Capsicum annuum #1 (1 members)
GCCTAAATAAAATTCGTCTTCAATATTCAAACCCCCCAAAAGATAACTCCAATGGCGAATCAATCTGATAATTCTATCGCATTTTCAGCA
GAGGAGTTGGAGTTTTTAGCGGAAGATGAAATAGTTGAAATTGTGCCAAACATGAGAATGGAACCGCTAAATCTTATATCTGGAGATTTT
GGACCTTTCCGTCCACAAAATAGCTGCTCAGGTGCCTCTCTGGTTAGCTGTGGCTTTGAACAAAAGAGGGAAATG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E506583
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g12530 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0006260 DNA replication
GO:0005634 nucleus

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34931 (68 Aa)

MANQSDNSIAFSAEELEFLAEDEIVEIVPNMRMEPLNLISGDFGPFRPQNAAQVPLWLAVALNKRGKX

SignalP predicts non-secretion with a score of 0.025

IPR007257 GINS complex, Psf2 component

Prediction based on longest six frame method

>SGN-P154429 (83 Aa)

IKFVFNIQTPQKITPMANQSDNSIAFSAEELEFLAEDEIVEIVPNMRMEPLNLISGDFGPFRPQNSCSGASLVSCGFEQKREM

SignalP predicts non-secretion with a score of 0.04

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	4445	DUF392	3
2	28209	DUF392	3
5	62451	DUF392	3
1.1	104901	GINS complex Psf2 component - Cellular Component: nucleus (GO:0005634) - Biological Process: DNA replication (GO:0006260)	3
2	124672	GINS complex Psf2 component - Cellular Component: nucleus (GO:0005634) - Biological Process: DNA replication (GO:0006260)	3
5	137842		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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