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Unigene SGN-U201101

Unigene Basic Information

Unigene ID:	SGN-U201101
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201101
mRNA sequence:	Length: 447 bp

>SGN-U201101 Capsicum annuum #1 (1 members)
ATTAGGTTAGATCACGCCACAAGTAACACAAGTCACCGGCGCGGACACAACCAAATGAGCAGCTGACAATTCCACAAATTCTAATAAGAG
GCCTCTGCAATTTCGCAATGACTATCTGTGATTCATCATCTTCCTCTGGGTCCTCAACAAAAGCATGGATCCTTCACGGCTTAGCTGCTG
GAGCTGCATTAGCCATAGCTGCCGGCGCTCAGGCTTACTATGGTCGCCGATCCGGCAAGTATCGGAGTCGAGTCATAGGGATCATACCTG
CACGTTTTTCTTCTACTCGGTTTCAAGGCAAACCACTCGTTCACATCCTCGGCAAGCCAATGATCCAGAGAACATGGGAAAGGGCGAACC
TTGCTGAGACATTGGATCAAGTCGTTGTGGCAACAGATGATGAAAAGATAGCTGAGTGCTGTCGTGGTTTTGGTGCTGAACTGATAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E496408
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At1g53000 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30695393\|ref\|NP_175708.2\|	113.6	5.2e-25	78.46	195 bp (43.6%)	3
Description:	cytidylyltransferase family [Arabidopsis thaliana] >gi12324630\|gb\|AAG52266.1\|AC019018_3 putativ…
arabidopsis	blastx	At1g53000.1	113.6	3.9e-26	78.46	195 bp (43.6%)	3
Description:	At1g53000.1 68408.m05505 CMP-KDO synthetase -related similar to GB:CAB89846 from [Zea mays]
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P155150 (140 Aa)

HKSPARTQPNEQLTIPQILIRGLCNFAMTICDSSSSSGSSTKAWILHGLAAGAALAIAAGAQAYYGRRSGKYRSRVIGIIPARFSSTRFQ
GKPLVHILGKPMIQRTWERANLAETLDQVVVATDDEKIAECCRGFGAELI

SignalP predicts non-secretion with a score of 0.114

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35622 (114 Aa)

MTICDSSSSSGSSTKAWILHGLAAGAALAIAAGAQAYYGRRSGKYRSRVIGIIPARFSSTRFQGKPLVHILGKPMIQRTWERANLAETLD
QVVVATDDEKIAECCRGFGAELIX

SignalP predicts non-secretion with a score of 0.371

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2951	Cytidylyl_trans NTP_transferase DUF77 ISPD_synthase Cons_hypoth454 KdsB	6
2	25680	Cytidylyl_trans NTP_transferase DUF77 ISPD_synthase Cons_hypoth454 KdsB	6
5	59676	Cytidylyl_trans NTP_transferase DUF77 ISPD_synthase Cons_hypoth454 KdsB	6
1.1	103480	3-deoxy-D-manno-octulosonate cytidylyltransferase - Cellular Component: cytoplasm (GO:0005737) - Molecular Function: 3-deoxy-manno-octulosonate cytidylyltransferase activity (GO:0008690) - Biological Process: lipopolysaccharide biosynthesis (GO:0009103) Acylneuraminate cytidylyltransferase - Biological Process: lipopolysaccharide biosynthesis (GO:0009103)	6
2	121507	Acylneuraminate cytidylyltransferase - Biological Process: lipopolysaccharide biosynthesis (GO:0009103) 3-deoxy-D-manno-octulosonate cytidylyltransferase - Cellular Component: cytoplasm (GO:0005737) - Molecular Function: 3-deoxy-manno-octulosonate cytidylyltransferase activity (GO:0008690) - Biological Process: lipopolysaccharide biosynthesis (GO:0009103)	6
5	131717	Acylneuraminate cytidylyltransferase - Biological Process: lipopolysaccharide biosynthesis (GO:0009103) 3-deoxy-D-manno-octulosonate cytidylyltransferase - Cellular Component: cytoplasm (GO:0005737) - Molecular Function: 3-deoxy-manno-octulosonate cytidylyltransferase activity (GO:0008690) - Biological Process: lipopolysaccharide biosynthesis (GO:0009103)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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