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Unigene SGN-U201166

Unigene Basic Information

Unigene ID:	SGN-U201166
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201166
mRNA sequence:	Length: 211 bp

>SGN-U201166 Capsicum annuum #1 (1 members)
CCGAGGAGAATATTGAAGCCGTTGATATCACTAGGCGTATGCTTGCCAGTTATTTTACACCTGATACATATGCAAATGAACATTCAGCAT
GCGCTGCCAGACTTGCAGCAGGTTTATGTGCTGACCTTGCTTCACCACTTTACTCTGGACGCGTCAAAAATGGTTTTGCTATGGTTCGCC
CTCCTGGCCACCATGCTGGTGTGAAACAGGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E508664
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g18520 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|22135463\|gb\|AAM93212.1\|	79.72	1.2e-14	76.47	204 bp (96.7%)	3
Description:	gi\|22135463\|gb\|AAM93212.1\| histone deacetylase HDA110 isoform 1 [Zea mays]
arabidopsis	blastx	At3g18520.2	79.72	2.9e-16	73.13	201 bp (95.3%)	3
Description:	At3g18520.2 68410.m06762 histone deacetylase -related contains Pfam profile: PF00850 Histone de…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P155216 (70 Aa)

EENIEAVDITRRMLASYFTPDTYANEHSACAARLAAGLCADLASPLYSGRVKNGFAMVRPPGHHAGVKQA

SignalP predicts non-secretion with a score of 0.046

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35683 (70 Aa)

EENIEAVDITRRMLASYFTPDTYANEHSACAARLAAGLCADLASPLYSGRVKNGFAMVRPPGHHAGVKQA

SignalP predicts non-secretion with a score of 0.046

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	343	His_deacetylse	48
2	22638	His_deacetylse	23
5	60246	Znf_RanGDP His_deacetylse Aldehyde_dehydr	5
1.1	101743	Histone deacetylase superfamily	41
2	122451	Zinc finger RanBP2-type - Molecular Function: zinc ion binding (GO:0008270) Histone deacetylase superfamily	5
5	135032	Zinc finger RanBP2-type - Molecular Function: zinc ion binding (GO:0008270) Histone deacetylase superfamily	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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