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Unigene SGN-U201247

Unigene Basic Information

Unigene ID:	SGN-U201247
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201247
mRNA sequence:	Length: 410 bp

>SGN-U201247 Capsicum annuum #1 (1 members)
CTTTCCTTTCCATAATGGCACTACAACACATCCATCATCTGCAAACCACCGTTTCTCAATACTGTACTTATAGTTCTTTGGCTCCTCCGT
GCTCAAGAAAGTTTCGGAATGGTGAGGTTTTCTTTGGGACCACATTTTCAACAATCCAGACTTATCACAATCCAGTACCAACTTTGTCCA
GAAGACTATTCTTGCCATCAGTTTCTGGGCTCTGGAATGCGCTAACAGGTGGTAACTCAGCTGGTGACGCTGTGATGGCAATTCGAAGGG
GAATGCTTCTTTTTAGACAGGGCCATGTGTTAGGGTCTTTGATGGAGTTTGACAAGGCAATTGAGCTTGATCCTCGCCAGAAAGCTTATC
TTTGGCAAAGGGGATTGTCTCTATATTATCTTGATAGGTATGAAGAGGGT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E506351
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g05625 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30679555\|ref\|NP_683531.2\|	123.2	7e-28	66.67	264 bp (64.4%)	3
Description:	gi\|30679555\|ref\|NP_683531.2\| expressed protein [Arabidopsis thaliana] gi\|27311659\|gb\|AAO00795.1…
arabidopsis	blastx	At3g05625.1	123.2	4e-29	66.67	264 bp (64.4%)	3
Description:	At3g05625.1 68410.m00574 expressed protein
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35763 (132 Aa)

MALQHIHHLQTTVSQYCTYSSLAPPCSRKFRNGEVFFGTTFSTIQTYHNPVPTLSRRLFLPSVSGLWNALTGGNSAGDAVMAIRRGMLLF
RQGHVLGSLMEFDKAIELDPRQKAYLWQRGLSLYYLDRYEEG

SignalP predicts non-secretion with a score of 0.169

IPR001440 TPR repeat

Prediction based on longest six frame method

>SGN-P155301 (136 Aa)

FLSIMALQHIHHLQTTVSQYCTYSSLAPPCSRKFRNGEVFFGTTFSTIQTYHNPVPTLSRRLFLPSVSGLWNALTGGNSAGDAVMAIRRG
MLLFRQGHVLGSLMEFDKAIELDPRQKAYLWQRGLSLYYLDRYEEG

SignalP predicts non-secretion with a score of 0.36

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3853	TPR	4
2	27173	TPR	4
5	61261	TPR	4
1.1	104359	Tetratricopeptide TPR_2 Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Tetratricopeptide region	4
2	123409	Tetratricopeptide TPR_2 Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Tetratricopeptide region	4
5	133608	Tetratricopeptide TPR_2 Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Tetratricopeptide region	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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