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Unigene SGN-U201632

Unigene Basic Information

Unigene ID:	SGN-U201632
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201632
mRNA sequence:	Length: 333 bp

>SGN-U201632 Capsicum annuum #1 (1 members)
GTTGACAGGGGCGCTATTAAATTTGTCCTCTCTGGAGCCAACATAATGTGTCCGGGCCTTACTTCTCCTGGGGGTGCTTTGGATCTTGAA
GTGGGAGCAGAAACTCCTGTGGCTATTATGGCTGAAGGGAAGCAACATGCTCTAGCTATTGGCTTTACAAAGATGTCGGCAATCGACATA
AAGGCAATCAACAAGGGAATTGGTGTGGATAACATGCATTATCTTAATGATGGCCTCTGGAAGATGGAACGACTGGATTGACCTTGAATA
TCACTCAAGGCCCCATCTTTTCACTACAGGGACAATGTCTTACCTTACCTGCTGCACATACAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E510577
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At1g09150 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|34894570\|ref\|NP_908610.1\|	161	3.4e-39	90.7	258 bp (77.5%)	1
Description:	gi\|34894570\|ref\|NP_908610.1\| MCT-1 protein-like [Oryza sativa (japonica cultivar-group)] gi\|201…
arabidopsis	blastx	At1g09150.1	159.8	2e-40	91.86	258 bp (77.5%)	1
Description:	At1g09150.1 68408.m00914 expressed protein
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0003723 RNA binding

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36132 (112 Aa)

VDRGAIKFVLSGANIMCPGLTSPGGALDLEVGAETPVAIMAEGKQHALAIGFTKMSAIDIKAINKGIGVDNMHYLNDGPLEDGTTGLTLN
ITQGPIFSLQGQCLTLPAAHTX

SignalP predicts non-secretion with a score of 0.154

IPR002478 PUA

Prediction based on longest six frame method

>SGN-P155693 (86 Aa)

VDRGAIKFVLSGANIMCPGLTSPGGALDLEVGAETPVAIMAEGKQHALAIGFTKMSAIDIKAINKGIGVDNMHYLNDGLWKMERLD

SignalP predicts non-secretion with a score of 0.154

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1260	Unchar_dom_2 PUA	15
2	25390	BSD Unchar_dom_2 PUA	6
5	59411	BSD Unchar_dom_2 PUA	6
1.1	101633	Nucleoside phosphatase GDA1/CD39 - Molecular Function: hydrolase activity (GO:0016787)	54
2	122041	Uncharacterized domain 2 PUA - Molecular Function: RNA binding (GO:0003723)	5
5	132253	Uncharacterized domain 2 PUA - Molecular Function: RNA binding (GO:0003723)	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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