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Unigene SGN-U203698

Unigene Basic Information

Unigene ID:	SGN-U203698
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	203698
mRNA sequence:	Length: 288 bp

>SGN-U203698 Capsicum annuum #1 (1 members)
AAGTGGGAGGTTTTGGTTGTAAATGATCCTGTTGTAAATGCCTTTTGTTTGCCTGGTGGGAAGATTGTAGTTTTCACAGGGTTGCTCGAA
CATTTTAGGACCGATGCTGAAATTGCAACCATAATTGGCCATGAGGTTGGACATGCTGTGGCTCGCCATGCTGCTGAGGGAATTACAAAG
AACTTGTGGTTTGCAATTATTCAATTGGTTCTTTATCAATTTGTTATGCCTGATGTCGTCAACACGATGTCAGCCCTGTTCCTAAGGCTT
CCATTCTCACGCACGATG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E498181
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g51740 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30696099\|ref\|NP_199987.2\|	178.7	1.7e-44	87.37	285 bp (99.0%)	1
Description:	peptidase M48 family protein [Arabidopsis thaliana] >gi26451602\|dbj\|BAC42898.1\| unknown protein…
arabidopsis	blastx	At5g51740.1	178.7	4.3e-46	87.37	285 bp (99.0%)	1
Description:	At5g51740.1 68412.m05799 expressed protein contains similarity to peptidase
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0006508 proteolysis and peptidolysis
GO:0016020 membrane
GO:0004222 metalloendopeptidase activity

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38124 (96 Aa)

KWEVLVVNDPVVNAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVGHAVARHAAEGITKNLWFAIIQLVLYQFVMPDVVNTMSALFLRL
PFSRTM

SignalP predicts non-secretion with a score of 0.256

IPR001915 Peptidase M48, Ste24p

Prediction based on longest six frame method

>SGN-P157805 (96 Aa)

KWEVLVVNDPVVNAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVGHAVARHAAEGITKNLWFAIIQLVLYQFVMPDVVNTMSALFLRL
PFSRTM

SignalP predicts non-secretion with a score of 0.256

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1949	Pept_M_Zn_BS Peptidase_M48	9
2	24050	Pept_M_Zn_BS Peptidase_M48	9
5	62603	Pept_M_Zn_BS Peptidase_M48	3
1.1	103154	Peptidase M48 Ste24p - Molecular Function: metalloendopeptidase activity (GO:0004222) - Biological Process: proteolysis (GO:0006508) - Cellular Component: membrane (GO:0016020)	8
2	120848	Peptidase M48 Ste24p - Molecular Function: metalloendopeptidase activity (GO:0004222) - Biological Process: proteolysis (GO:0006508) - Cellular Component: membrane (GO:0016020)	8
5	132118	Peptidase M48 Ste24p - Molecular Function: metalloendopeptidase activity (GO:0004222) - Biological Process: proteolysis (GO:0006508) - Cellular Component: membrane (GO:0016020)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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