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Unigene SGN-U203877

Unigene Basic Information

Unigene ID:	SGN-U203877
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	203877
mRNA sequence:	Length: 324 bp

>SGN-U203877 Capsicum annuum #1 (1 members)
TACACATTGGAGCAAGAGCTCGCATCACTGTGGGAGAAGATGAGAACGCGAAATATTGCCAAAGAAGAAAGATCAAGATTGGTGAGTGAT
GCTTTGAACAAAATGAAAGGGAAAATCCCTGAAATAGCAAGCTCCCATGTTCCTTCTCGTGTTCTTCAGACTTGTGTGAAACATTGTACA
CAAGATGAAAGGATTGCTGTGTTTGTGGAGATTCGACCTCATTTTATCANTCTTGCCAGCAATACCTATGCAGTCCATCTGGTGACAAAG
ATGCTTGATAATGCATCCAAAAAGCAGCAGGCAGAATTCATTTCCTCTCTTCAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E511160
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g16810 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18401257\|ref\|NP_566559.1\|	148.3	2.3e-35	67.29	321 bp (99.1%)	1
Description:	APUM24 (Arabidopsis Pumilio 24); RNA binding / binding [Arabidopsis thaliana] >gi7939573\|dbj\|BA…
arabidopsis	blastx	At3g16810.1	148.3	6e-37	67.29	321 bp (99.1%)	1
Description:	At3g16810.1 68410.m01933 expressed protein contains Pfam profile:PF00806 Pumilio-family RNA bin…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0003723 RNA binding
GO:0016071 mRNA metabolism

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P157987 (108 Aa)

YTLEQELASLWEKMRTRNIAKEERSRLVSDALNKMKGKIPEIASSHVPSRVLQTCVKHCTQDERIAVFVEIRPHFIXLASNTYAVHLVTK
MLDNASKKQQAEFISSLH

SignalP predicts non-secretion with a score of 0.028

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38296 (107 Aa)

HIGARARITVGEDGTRNIAKEERSRLVSDALNKMKGKIPEIASSHVPSRVLQTCVKHCTQDERIAVFVEIRPHFIXLASNTYAVHLVTKM
LDNASKKQQAEFISSLH

SignalP predicts non-secretion with a score of 0.048

IPR001313 Pumilio/Puf RNA-binding

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	291	Pumilio/Puf	54
2	24574	SAP Pumilio/Puf	8
5	59003	SAP Pumilio/Puf	7
1.1	101483	Plant self-incompatibility S1	106
2	121160	Armadillo-like helical - Molecular Function: binding (GO:0005488) Pumilio/Puf RNA-binding - Molecular Function: RNA binding (GO:0003723)	7
5	131943	Armadillo-like helical - Molecular Function: binding (GO:0005488) Pumilio/Puf RNA-binding - Molecular Function: RNA binding (GO:0003723)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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