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Unigene SGN-U204510

Unigene Basic Information

Unigene ID:	SGN-U204510
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204510
mRNA sequence:	Length: 383 bp

>SGN-U204510 Capsicum annuum #1 (1 members)
CTTTCTTCTTCCGCGTTAAAAAGCTCTCCGATAAGGCTGTTTTGCCTTCCAGAGGCTCCCCTTTTTCTGCTGGCTATGATCTCTCCAGTG
CAACGGAGACGAAAGTGCCTGCCAGGGGAAAAGCTCTAGTACCAACAGATCTTAGTATTGCCGTTCCTCAAGGAACATATGCCCGCATTG
CTCCAAGATCAGGATTGACCTGCAAGCATTCTATAGACGTTGGGGCAGGTGTGGTTGATGCTGACTACAGGGGACCCAGTTGGTGTTATA
CTTTTCAACCATTCTGATGTTGATTTTGAACCTCAAAATTGGTGACAGAATAGCTCAGTCGATCATTGAGAAAATCATCGTGCCAGAGGT
TGAGGTGGTTGATGATCTACACT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E496232
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g46940 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15232681\|ref\|NP_190278.1\|	149.8	1.3e-39	84.52	252 bp (65.8%)	3
Description:	deoxyuridine 5'-triphosphate nucleotidohydrolase family [Arabidopsis thaliana] >gi13878143\|gb\|A…
arabidopsis	blastx	At3g46940.1	149.8	5.8e-41	84.52	252 bp (65.8%)	3
Description:	At3g46940.1 68410.m04723 dUTP pyrophosphatase-related protein dUTP pyrophosphatase - Lycopersic…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0046080 dUTP metabolism
GO:0016787 hydrolase activity

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P158639 (94 Aa)

FFFRVKKLSDKAVLPSRGSPFSAGYDLSSATETKVPARGKALVPTDLSIAVPQGTYARIAPRSGLTCKHSIDVGAGVVDADYRGPSWCYT
FQPF

SignalP predicts non-secretion with a score of 0.117

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38915 (127 Aa)

FFFRVKKLSDKAVLPSRGSPFSAGYDLSSATETKVPARGKALVPTDLSIAVPQGTYARIAPRSGLTCKHSIDVGAGVVDADYRGPVGVIL
FNHSDVDFDLKIGDRIAQSIIEKIIVPEVEVVDDLHX

SignalP predicts non-secretion with a score of 0.117

IPR008180 DeoxyUTP pyrophosphatase
IPR008181 DeoxyUTP pyrophosphatase subfamily 1

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2006	dCTP_deaminase DeoxyUTPase dUTPase_1	9
2	24139	dCTP_deaminase DeoxyUTPase dUTPase_1	9
5	58193	dCTP_deaminase DeoxyUTPase dUTPase_1	9
1.1	102969	DeoxyUTP pyrophosphatase - Biological Process: dUTP metabolism (GO:0046080) dCTP Deaminase DeoxyUTP pyrophosphatase subfamily 1 - Molecular Function: hydrolase activity (GO:0016787) - Biological Process: dUTP metabolism (GO:0046080)	9
2	120450	DeoxyUTP pyrophosphatase - Biological Process: dUTP metabolism (GO:0046080) dCTP Deaminase DeoxyUTP pyrophosphatase subfamily 1 - Molecular Function: hydrolase activity (GO:0016787) - Biological Process: dUTP metabolism (GO:0046080)	9
5	131973	DeoxyUTP pyrophosphatase - Biological Process: dUTP metabolism (GO:0046080) dCTP Deaminase DeoxyUTP pyrophosphatase subfamily 1 - Molecular Function: hydrolase activity (GO:0016787) - Biological Process: dUTP metabolism (GO:0046080)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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