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Unigene SGN-U205312

Unigene Basic Information

Unigene ID:	SGN-U205312
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	205312
mRNA sequence:	Length: 223 bp

>SGN-U205312 Capsicum annuum #1 (1 members)
TGGTTAAACTACCTCGTGAAGTGATACAGCTTTCACCAATATTCAGTGCCATCATCCCTCATAAAATGCCCGATGGTCGTCTCTTGAAAA
CTGGATATGTAAAGTCGTCAAGCTTCTCTCAGTCTGCTGCCACGGACATGGAAAACACAATTCTTGACATGGAAAATCAGGGCGTGCAGT
GGGTGTGTATAGATCTTCGGAATAATCCTGGAGGTCTGGTTAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E491595
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g57680 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30694698\|ref\|NP_191327.2\|	99.75	1.1e-20	65	219 bp (98.2%)	3
Description:	gi\|30694698\|ref\|NP_191327.2\| Photosystem II D1 protein processing enzyme I (C-terminal processi…
arabidopsis	blastx	At3g57680.1	99.75	2.7e-22	65	219 bp (98.2%)	3
Description:	At3g57680.1 68410.m05939 Photosystem II D1 protein processing enzyme I (C-terminal processing p…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P159456 (74 Aa)

VKLPREVIQLSPIFSAIIPHKMPDGRLLKTGYVKSSSFSQSAATDMENTILDMENQGVQWVCIDLRNNPGGLVT

SignalP predicts non-secretion with a score of 0.153

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39689 (74 Aa)

VKLPREVIQLSPIFSAIIPHKMPDGRLLKTGYVKSSSFSQSAATDMENTILDMENQGVQWVCIDLRNNPGGLVT

SignalP predicts non-secretion with a score of 0.153

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	951	PDZ Peptidase_S41 Peptidase_S41A	20
2	22967	PDZ Peptidase_S41 Peptidase_S41A	17
5	58866	PDZ Peptidase_S41 Pept_S41_tsp Peptidase_S41A	7
1.1	102320	PDZ/DHR/GLGF - Molecular Function: protein binding (GO:0005515) Peptidase S41 - Biological Process: proteolysis (GO:0006508) - Molecular Function: serine-type peptidase activity (GO:0008236)	17
2	120033	PDZ/DHR/GLGF - Molecular Function: protein binding (GO:0005515) Peptidase S41A C-terminal protease - Biological Process: proteolysis (GO:0006508) - Molecular Function: serine-type peptidase activity (GO:0008236) Peptidase S41 - Biological Process: proteolysis (GO:0006508) - Molecular Function: serine-type peptidase activity (GO:0008236)	11
5	131994	PDZ/DHR/GLGF - Molecular Function: protein binding (GO:0005515) Peptidase S41A C-terminal protease - Biological Process: proteolysis (GO:0006508) - Molecular Function: serine-type peptidase activity (GO:0008236) Peptidase S41 - Biological Process: proteolysis (GO:0006508) - Molecular Function: serine-type peptidase activity (GO:0008236)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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