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Unigene SGN-U205401

Unigene Basic Information

Unigene ID:	SGN-U205401
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	205401
mRNA sequence:	Length: 266 bp

>SGN-U205401 Capsicum annuum #1 (1 members)
TCCATAACCAATATGACCGGAGCTTACAGACGCGTGTTTCAAAAGCCAAAGGATTTTGAATGGGAATTGCTTAGTTACACTGATGGAACT
GTACCTCTAGCTGATACAGATTTGGATGTCATTGCCAAGTCAGTAAAGAAAAGCAAGGTTAGAGAGGAGGACTCGGCCAATGGAAGCGAG
GAACTTCCTGCCGAATCTTCACCAATCTCTGTAGGTGGTGACATGGTTACAGGAAAAGGACATGAGGAAAAGATTAACAGTGAATC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E496056
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g04820 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15229362\|ref\|NP_187133.1\|	72.4	1.7e-12	51.39	216 bp (81.2%)	1
Description:	gi\|15229362\|ref\|NP_187133.1\| hypothetical protein [Arabidopsis thaliana] gi\|12322858\|gb\|AAG5142…
arabidopsis	blastx	At3g04820.1	72.4	4.4e-14	51.39	216 bp (81.2%)	1
Description:	At3g04820.1 68410.m00481 hypothetical protein similar to hypothetical 77.0 KD protein in HES1-S…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39778 (88 Aa)

HNQYDRSLQTLFQKPKDFEWELLSYTDGTVPLADTDLDVIAKSVKKSKVREEDSANGSEELPAESSPISVGGDMVTGKGHEEKINSES

SignalP predicts non-secretion with a score of 0.042

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P159548 (89 Aa)

SITNMTGAYRRVFQKPKDFEWELLSYTDGTVPLADTDLDVIAKSVKKSKVREEDSANGSEELPAESSPISVGGDMVTGKGHEEKINSES

SignalP predicts non-secretion with a score of 0.047

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1954	UPF0024 Cons_hypoth62	9
2	30038		2
5	76803		1
1.1	103287	tRNA pseudouridine synthase D TruD - Molecular Function: pseudouridylate synthase activity (GO:0004730) - Biological Process: tRNA processing (GO:0008033) TRUD - Molecular Function: pseudouridylate synthase activity (GO:0004730) - Biological Process: tRNA processing (GO:0008033)	7
2	127041		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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