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Unigene SGN-U205567

Unigene Basic Information

Unigene ID:	SGN-U205567
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	205567
mRNA sequence:	Length: 336 bp

>SGN-U205567 Capsicum annuum #1 (1 members)
GGAATGTACAACCGCTATGAAGGAATTCCTTTGTCTTGGGATGAACATGCTGTTACATCTTGCACTGGTGGATTGGGTAACAAAAGCACC
GGAGACAACTTTAATGGAGTTCCAAATATAGATCATACACAATCCTTTGTCCGGAAAGATCTCATTGACTGGATGCGGTGGCTAACATCC
TCTGTTGGCTTCCAAGATTTTCGTCTCGATTTTGCTAAAGGTTATGCTTCAAAGTATGTAAAGGAATATATCGAGGGAGCTAAACCAATA
TTTTCAGTTGGAGAATACTGGGACACTTGCAACTACAAGGACCGCTATTTGGATTACAACCAAGAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E511265
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At1g76130 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|1220453\|gb\|AAA91884.1\|	226.9	5e-59	90.18	336 bp (100.0%)	1
Description:	alpha-amylase [Solanum tuberosum]
arabidopsis	blastx	At1g76130.1	199.5	2.2e-52	76.79	336 bp (100.0%)	1
Description:	At1g76130.1 68408.m08117 alpha-amylase (1,4-alpha-D-glucan glucanohydrolase), putative strong s…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P159718 (112 Aa)

GMYNRYEGIPLSWDEHAVTSCTGGLGNKSTGDNFNGVPNIDHTQSFVRKDLIDWMRWLTSSVGFQDFRLDFAKGYASKYVKEYIEGAKPI
FSVGEYWDTCNYKDRYLDYNQD

SignalP predicts non-secretion with a score of 0.108

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39941 (112 Aa)

GMYNRYEGIPLSWDEHAVTSCTGGLGNKSTGDNFNGVPNIDHTQSFVRKDLIDWMRWLTSSVGFQDFRLDFAKGYASKYVKEYIEGAKPI
FSVGEYWDTCNYKDRYLDYNQD

SignalP predicts non-secretion with a score of 0.108

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	669	Alpha_amyl_cat Glyco_hydro_13	28
2	22537	Alpha_amyl_cat Glyco_hydro_13	26
5	56978	Alpha_amyl_cat Glyco_hydro_13	19
1.1	101982	Glycoside hydrolase family 13 - Molecular Function: alpha-amylase activity (GO:0004556) - Biological Process: carbohydrate metabolism (GO:0005975) Alpha-amylase beta-sheet C-terminal Alpha amylase catalytic region - Molecular Function: alpha-amylase activity (GO:0004556) - Biological Process: carbohydrate metabolism (GO:0005975)	26
2	119001	Glycoside hydrolase family 13 - Molecular Function: alpha-amylase activity (GO:0004556) - Biological Process: carbohydrate metabolism (GO:0005975) Alpha-amylase beta-sheet C-terminal Alpha amylase catalytic region - Molecular Function: alpha-amylase activity (GO:0004556) - Biological Process: carbohydrate metabolism (GO:0005975)	23
5	131778	Glycoside hydrolase family 13 - Molecular Function: alpha-amylase activity (GO:0004556) - Biological Process: carbohydrate metabolism (GO:0005975) Alpha-amylase beta-sheet C-terminal Alpha amylase catalytic region - Molecular Function: alpha-amylase activity (GO:0004556) - Biological Process: carbohydrate metabolism (GO:0005975)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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